Wall clock time and date at job start Wed Apr 1 2020 04:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46810 * 2 1 4 4 N 1.46495 * 109.47004 * 119.99508 * 2 1 3 5 5 C 1.46499 * 120.00321 * 304.37353 * 4 2 1 6 6 C 1.39674 * 119.99700 * 124.36962 * 4 2 1 7 7 C 1.38982 * 120.04347 * 353.89691 * 6 4 2 8 8 C 1.38121 * 120.06946 * 180.02562 * 7 6 4 9 9 C 1.38197 * 120.13997 * 0.02562 * 8 7 6 10 10 C 1.38899 * 120.07614 * 359.97438 * 9 8 7 11 11 N 1.39949 * 120.02843 * 179.97438 * 10 9 8 12 12 C 1.34773 * 119.99742 * 33.99048 * 11 10 9 13 13 O 1.21584 * 120.00500 * 5.26195 * 12 11 10 14 14 N 1.34781 * 119.99887 * 185.25897 * 12 11 10 15 15 C 1.47746 * 125.82057 * 359.91282 * 14 12 11 16 16 C 1.54904 * 104.84229 * 155.82699 * 15 14 12 17 17 C 1.55157 * 101.58351 * 37.09198 * 16 15 14 18 18 O 1.42904 * 110.72187 * 82.86152 * 17 16 15 19 19 C 1.50702 * 110.87373 * 206.06821 * 17 16 15 20 20 H 1.07997 * 120.00302 * 112.17363 * 19 17 16 21 21 C 1.37885 * 119.99781 * 292.17017 * 19 17 16 22 22 N 1.31504 * 120.00194 * 187.94004 * 21 19 17 23 23 Si 1.86804 * 119.99862 * 7.93837 * 21 19 17 24 24 H 1.48501 * 109.46974 * 94.87447 * 23 21 19 25 25 H 1.48496 * 109.47094 * 214.87843 * 23 21 19 26 26 H 1.48500 * 109.47171 * 334.87767 * 23 21 19 27 27 C 1.47020 * 125.64956 * 179.97438 * 14 12 11 28 28 C 1.38743 * 119.94005 * 0.23032 * 10 9 8 29 29 H 1.09001 * 109.47169 * 300.00170 * 1 2 3 30 30 H 1.08998 * 109.46622 * 60.00252 * 1 2 3 31 31 H 1.09002 * 109.46830 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47169 * 239.99829 * 2 1 3 33 33 H 1.09004 * 109.46958 * 179.97438 * 3 2 1 34 34 H 1.09007 * 109.47352 * 299.99599 * 3 2 1 35 35 H 1.09001 * 109.47394 * 59.99967 * 3 2 1 36 36 H 1.09003 * 109.47300 * 269.99937 * 5 4 2 37 37 H 1.08996 * 109.47048 * 29.99869 * 5 4 2 38 38 H 1.08997 * 109.47252 * 149.99737 * 5 4 2 39 39 H 1.08007 * 119.96283 * 359.97438 * 7 6 4 40 40 H 1.07992 * 119.93057 * 179.97438 * 8 7 6 41 41 H 1.07995 * 119.95718 * 179.97438 * 9 8 7 42 42 H 0.96993 * 120.00101 * 213.98804 * 11 10 9 43 43 H 1.08998 * 110.29379 * 37.01659 * 15 14 12 44 44 H 1.08998 * 110.43200 * 274.70145 * 15 14 12 45 45 H 1.09004 * 111.00701 * 279.01829 * 16 15 14 46 46 H 1.09002 * 111.00403 * 155.16538 * 16 15 14 47 47 H 0.96698 * 113.99987 * 185.02828 * 18 17 16 48 48 H 0.97000 * 120.00370 * 179.97438 * 22 21 19 49 49 H 1.09005 * 109.88006 * 61.61507 * 27 14 12 50 50 H 1.09000 * 109.88281 * 300.60135 * 27 14 12 51 51 H 1.08002 * 120.07395 * 179.72613 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.5872 -0.2482 2.5246 6 6 2.8949 -1.7706 1.0701 7 6 3.2051 -2.2717 -0.1886 8 6 4.0715 -3.3401 -0.3138 9 6 4.6321 -3.9145 0.8112 10 6 4.3263 -3.4184 2.0720 11 7 4.8942 -4.0011 3.2106 12 6 6.1447 -4.5012 3.1591 13 8 6.8145 -4.3614 2.1541 14 7 6.6527 -5.1562 4.2218 15 6 5.9566 -5.3978 5.5024 16 6 6.6482 -6.6483 6.1003 17 6 8.1254 -6.4146 5.6874 18 8 8.7757 -5.5381 6.6099 19 6 8.8673 -7.7223 5.5839 20 1 9.2029 -8.0780 4.6210 21 6 9.1177 -8.4645 6.7186 22 7 9.8964 -9.5222 6.6540 23 14 8.3506 -7.9676 8.3478 24 1 7.0916 -8.7275 8.5544 25 1 9.2968 -8.2674 9.4523 26 1 8.0536 -6.5127 8.3318 27 6 7.9955 -5.7498 4.3008 28 6 3.4531 -2.3480 2.2018 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8900 36 1 2.2800 0.5053 2.8993 37 1 0.5867 0.1791 2.4583 38 1 1.5742 -1.1000 3.2046 39 1 2.7675 -1.8258 -1.0696 40 1 4.3106 -3.7280 -1.2929 41 1 5.3088 -4.7500 0.7098 42 1 4.3879 -4.0450 4.0367 43 1 4.8994 -5.5966 5.3264 44 1 6.0769 -4.5431 6.1681 45 1 6.2574 -7.5623 5.6531 46 1 6.5447 -6.6708 7.1852 47 1 9.6774 -5.2985 6.3558 48 1 10.0728 -10.0442 7.4523 49 1 8.7515 -4.9723 4.1903 50 1 8.1165 -6.4983 3.5178 51 1 3.2103 -1.9634 3.1814 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364086372.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:55 Heat of formation + Delta-G solvation = -40.065988 kcal Electronic energy + Delta-G solvation = -30701.237228 eV Core-core repulsion = 26600.653056 eV Total energy + Delta-G solvation = -4100.584172 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.83982 -40.58715 -39.48109 -37.96524 -36.22456 -35.59567 -34.48011 -33.56343 -32.09133 -30.59628 -30.28756 -29.87092 -28.03949 -27.28281 -26.81159 -24.50549 -23.49622 -22.94591 -21.73966 -21.23877 -20.37395 -19.73525 -19.20073 -18.76452 -17.34298 -16.99369 -16.81816 -16.75084 -16.66958 -16.14294 -16.06509 -15.57079 -15.19700 -15.07784 -14.76383 -14.71959 -14.64788 -14.61635 -14.18113 -14.05714 -13.82904 -13.58522 -13.25693 -13.16680 -13.12055 -13.06622 -12.82798 -12.78503 -12.51013 -12.41285 -12.20694 -12.17203 -12.10751 -11.78831 -11.57238 -11.43743 -11.23232 -10.96595 -10.75418 -10.51002 -10.30170 -9.76002 -9.15265 -8.35161 -8.12637 -6.50328 0.42580 0.69892 1.40792 1.42979 1.49081 1.71704 2.00444 2.21984 2.42842 2.86017 2.99692 3.00183 3.54368 3.74741 3.84480 3.98328 4.01991 4.17034 4.20742 4.23767 4.32197 4.39805 4.41822 4.48460 4.52580 4.61743 4.63742 4.71893 4.76154 4.78792 4.79645 4.84296 4.91981 4.93842 5.00807 5.04741 5.07756 5.08837 5.28113 5.32438 5.39651 5.40649 5.42825 5.51089 5.52785 5.71341 5.98929 6.03731 6.07437 6.44491 6.59693 6.60659 6.82778 7.10533 7.30537 7.39084 8.79005 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026285 B = 0.002076 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.997402 B =13481.135264 C =14013.017448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.134 3.866 3 C -0.159 4.159 4 N -0.626 5.626 5 C 0.086 3.914 6 C 0.233 3.767 7 C -0.219 4.219 8 C -0.056 4.056 9 C -0.206 4.206 10 C 0.201 3.799 11 N -0.671 5.671 12 C 0.716 3.284 13 O -0.615 6.615 14 N -0.626 5.626 15 C 0.106 3.894 16 C -0.127 4.127 17 C 0.220 3.780 18 O -0.569 6.569 19 C -0.553 4.553 20 H 0.033 0.967 21 C 0.034 3.966 22 N -0.936 5.936 23 Si 0.938 3.062 24 H -0.277 1.277 25 H -0.307 1.307 26 H -0.197 1.197 27 C 0.122 3.878 28 C -0.228 4.228 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.143 0.857 40 H 0.137 0.863 41 H 0.100 0.900 42 H 0.419 0.581 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.376 0.624 48 H 0.268 0.732 49 H 0.057 0.943 50 H 0.045 0.955 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.377 22.031 -8.439 33.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.031 3.969 3 C -0.217 4.217 4 N -0.337 5.337 5 C -0.056 4.056 6 C 0.130 3.870 7 C -0.241 4.241 8 C -0.075 4.075 9 C -0.229 4.229 10 C 0.106 3.894 11 N -0.320 5.320 12 C 0.419 3.581 13 O -0.495 6.495 14 N -0.362 5.362 15 C -0.016 4.016 16 C -0.165 4.165 17 C 0.180 3.820 18 O -0.376 6.376 19 C -0.591 4.591 20 H 0.051 0.949 21 C -0.166 4.166 22 N -0.575 5.575 23 Si 0.763 3.237 24 H -0.204 1.204 25 H -0.235 1.235 26 H -0.119 1.119 27 C -0.002 4.002 28 C -0.253 4.253 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.160 0.840 40 H 0.155 0.845 41 H 0.118 0.882 42 H 0.258 0.742 43 H 0.119 0.881 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.224 0.776 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.064 0.936 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.519 22.112 -8.751 33.446 hybrid contribution 1.058 -0.846 0.667 1.510 sum -22.461 21.266 -8.084 31.970 Atomic orbital electron populations 1.22137 0.93986 1.02229 1.03246 1.21217 0.94813 0.93024 0.87868 1.22155 1.00786 0.95753 1.03045 1.46670 1.48517 1.31786 1.06743 1.21722 1.00445 1.00128 0.83319 1.17580 0.89117 0.87323 0.92982 1.20855 1.05496 1.01353 0.96424 1.20916 0.94091 0.94508 0.98027 1.20900 1.05564 1.03940 0.92452 1.17370 0.93961 0.92314 0.85782 1.42435 1.13929 1.61411 1.14221 1.15515 0.81712 0.78561 0.82322 1.90899 1.60978 1.65093 1.32539 1.47707 1.17161 1.56900 1.14467 1.22558 0.97096 0.98263 0.83680 1.23082 0.94111 0.97787 1.01523 1.19759 0.91142 0.86843 0.84305 1.86467 1.32315 1.68104 1.50729 1.21410 1.38049 1.05271 0.94327 0.94855 1.25822 0.93613 0.93791 1.03365 1.70089 1.36807 1.19378 1.31188 0.86098 0.77671 0.82820 0.77157 1.20375 1.23505 1.11873 1.22378 0.82607 0.95752 0.99454 1.20325 1.06359 0.99483 0.99120 0.91730 0.90159 0.92955 0.89089 0.93809 0.90173 0.92125 0.93521 0.89730 0.91247 0.83977 0.84538 0.88168 0.74222 0.88068 0.89485 0.90162 0.89547 0.77575 0.92349 0.92492 0.93642 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.08 71.98 0.65 -0.55 16 2 C 0.13 1.45 3.20 44.99 0.14 1.59 16 3 C -0.16 -1.52 9.26 71.98 0.67 -0.85 16 4 N -0.63 -9.15 2.90 -698.15 -2.02 -11.17 16 5 C 0.09 0.93 9.28 127.77 1.19 2.11 16 6 C 0.23 4.73 6.53 38.20 0.25 4.97 16 7 C -0.22 -4.48 9.31 22.42 0.21 -4.27 16 8 C -0.06 -1.37 10.03 22.23 0.22 -1.15 16 9 C -0.21 -6.35 8.65 22.42 0.19 -6.15 16 10 C 0.20 5.65 6.26 38.12 0.24 5.89 16 11 N -0.67 -18.66 5.29 -317.25 -1.68 -20.33 16 12 C 0.72 26.09 8.23 179.05 1.47 27.56 16 13 O -0.62 -27.39 14.40 -3.98 -0.06 -27.45 16 14 N -0.63 -22.21 3.34 -828.94 -2.77 -24.98 16 15 C 0.11 3.01 6.55 86.79 0.57 3.57 16 16 C -0.13 -4.63 5.03 31.98 0.16 -4.46 16 17 C 0.22 9.46 0.67 -10.35 -0.01 9.45 16 18 O -0.57 -22.85 10.08 -148.98 -1.50 -24.35 16 19 C -0.55 -29.88 8.82 25.60 0.23 -29.65 16 20 H 0.03 2.05 7.77 -2.91 -0.02 2.03 16 21 C 0.03 1.91 5.46 84.66 0.46 2.37 16 22 N -0.94 -56.72 13.96 21.45 0.30 -56.42 16 23 Si 0.94 42.00 24.57 68.60 1.69 43.69 16 24 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.31 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.20 -8.02 4.78 99.48 0.48 -7.54 16 27 C 0.12 5.08 6.20 86.73 0.54 5.62 16 28 C -0.23 -5.05 9.07 22.52 0.20 -4.85 16 29 H 0.06 0.43 6.53 -2.39 -0.02 0.41 16 30 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.09 1.01 5.31 -2.39 -0.01 0.99 16 33 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.06 0.54 7.78 -2.39 -0.02 0.52 16 36 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.08 0.61 6.21 -2.39 -0.01 0.59 16 38 H 0.07 0.73 6.46 -2.39 -0.02 0.71 16 39 H 0.14 2.19 5.74 -2.91 -0.02 2.17 16 40 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 41 H 0.10 3.70 6.45 -2.91 -0.02 3.68 16 42 H 0.42 8.61 7.38 -92.71 -0.68 7.93 16 43 H 0.10 2.13 7.39 -2.39 -0.02 2.11 16 44 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.08 3.04 8.05 -2.38 -0.02 3.02 16 46 H 0.09 3.02 5.04 -2.39 -0.01 3.01 16 47 H 0.38 13.52 9.08 -74.06 -0.67 12.85 16 48 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 49 H 0.06 2.35 8.06 -2.38 -0.02 2.33 16 50 H 0.05 2.12 7.62 -2.39 -0.02 2.10 16 51 H 0.14 2.49 6.31 -2.91 -0.02 2.47 16 Total: -1.00 -74.10 391.53 0.73 -73.37 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: -0.62 Total: 36.45 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 7.39 Total: 11.20 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -6.17 Total: -112.90 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -1.56 Total: -51.80 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.69 Total: 43.69 kcal Total: -74.10 0.73 -73.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364086372.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.299 kcal (2) G-P(sol) polarization free energy of solvation -74.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds