Wall clock time and date at job start Wed Apr 1 2020 04:28:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52996 * 109.46810 * 2 1
4 4 N 1.46495 * 109.47004 * 119.99508 * 2 1 3
5 5 C 1.46499 * 120.00321 * 304.37353 * 4 2 1
6 6 C 1.39674 * 119.99700 * 124.36962 * 4 2 1
7 7 C 1.38982 * 120.04347 * 353.89691 * 6 4 2
8 8 C 1.38121 * 120.06946 * 180.02562 * 7 6 4
9 9 C 1.38197 * 120.13997 * 0.02562 * 8 7 6
10 10 C 1.38899 * 120.07614 * 359.97438 * 9 8 7
11 11 N 1.39949 * 120.02843 * 179.97438 * 10 9 8
12 12 C 1.34773 * 119.99742 * 33.99048 * 11 10 9
13 13 O 1.21584 * 120.00500 * 5.26195 * 12 11 10
14 14 N 1.34781 * 119.99887 * 185.25897 * 12 11 10
15 15 C 1.47746 * 125.82057 * 359.91282 * 14 12 11
16 16 C 1.54904 * 104.84229 * 155.82699 * 15 14 12
17 17 C 1.55157 * 101.58351 * 37.09198 * 16 15 14
18 18 O 1.42904 * 110.72187 * 82.86152 * 17 16 15
19 19 C 1.50702 * 110.87373 * 206.06821 * 17 16 15
20 20 H 1.07997 * 120.00302 * 112.17363 * 19 17 16
21 21 C 1.37885 * 119.99781 * 292.17017 * 19 17 16
22 22 N 1.31504 * 120.00194 * 187.94004 * 21 19 17
23 23 Si 1.86804 * 119.99862 * 7.93837 * 21 19 17
24 24 H 1.48501 * 109.46974 * 94.87447 * 23 21 19
25 25 H 1.48496 * 109.47094 * 214.87843 * 23 21 19
26 26 H 1.48500 * 109.47171 * 334.87767 * 23 21 19
27 27 C 1.47020 * 125.64956 * 179.97438 * 14 12 11
28 28 C 1.38743 * 119.94005 * 0.23032 * 10 9 8
29 29 H 1.09001 * 109.47169 * 300.00170 * 1 2 3
30 30 H 1.08998 * 109.46622 * 60.00252 * 1 2 3
31 31 H 1.09002 * 109.46830 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.47169 * 239.99829 * 2 1 3
33 33 H 1.09004 * 109.46958 * 179.97438 * 3 2 1
34 34 H 1.09007 * 109.47352 * 299.99599 * 3 2 1
35 35 H 1.09001 * 109.47394 * 59.99967 * 3 2 1
36 36 H 1.09003 * 109.47300 * 269.99937 * 5 4 2
37 37 H 1.08996 * 109.47048 * 29.99869 * 5 4 2
38 38 H 1.08997 * 109.47252 * 149.99737 * 5 4 2
39 39 H 1.08007 * 119.96283 * 359.97438 * 7 6 4
40 40 H 1.07992 * 119.93057 * 179.97438 * 8 7 6
41 41 H 1.07995 * 119.95718 * 179.97438 * 9 8 7
42 42 H 0.96993 * 120.00101 * 213.98804 * 11 10 9
43 43 H 1.08998 * 110.29379 * 37.01659 * 15 14 12
44 44 H 1.08998 * 110.43200 * 274.70145 * 15 14 12
45 45 H 1.09004 * 111.00701 * 279.01829 * 16 15 14
46 46 H 1.09002 * 111.00403 * 155.16538 * 16 15 14
47 47 H 0.96698 * 113.99987 * 185.02828 * 18 17 16
48 48 H 0.97000 * 120.00370 * 179.97438 * 22 21 19
49 49 H 1.09005 * 109.88006 * 61.61507 * 27 14 12
50 50 H 1.09000 * 109.88281 * 300.60135 * 27 14 12
51 51 H 1.08002 * 120.07395 * 179.72613 * 28 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0183 -0.6905 1.1962
5 6 1.5872 -0.2482 2.5246
6 6 2.8949 -1.7706 1.0701
7 6 3.2051 -2.2717 -0.1886
8 6 4.0715 -3.3401 -0.3138
9 6 4.6321 -3.9145 0.8112
10 6 4.3263 -3.4184 2.0720
11 7 4.8942 -4.0011 3.2106
12 6 6.1447 -4.5012 3.1591
13 8 6.8145 -4.3614 2.1541
14 7 6.6527 -5.1562 4.2218
15 6 5.9566 -5.3978 5.5024
16 6 6.6482 -6.6483 6.1003
17 6 8.1254 -6.4146 5.6874
18 8 8.7757 -5.5381 6.6099
19 6 8.8673 -7.7223 5.5839
20 1 9.2029 -8.0780 4.6210
21 6 9.1177 -8.4645 6.7186
22 7 9.8964 -9.5222 6.6540
23 14 8.3506 -7.9676 8.3478
24 1 7.0916 -8.7275 8.5544
25 1 9.2968 -8.2674 9.4523
26 1 8.0536 -6.5127 8.3318
27 6 7.9955 -5.7498 4.3008
28 6 3.4531 -2.3480 2.2018
29 1 -0.3633 0.5139 0.8900
30 1 -0.3632 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 1.8934 -0.5139 -0.8900
33 1 3.1300 1.4425 0.0005
34 1 1.6767 1.9563 -0.8901
35 1 1.6766 1.9564 0.8900
36 1 2.2800 0.5053 2.8993
37 1 0.5867 0.1791 2.4583
38 1 1.5742 -1.1000 3.2046
39 1 2.7675 -1.8258 -1.0696
40 1 4.3106 -3.7280 -1.2929
41 1 5.3088 -4.7500 0.7098
42 1 4.3879 -4.0450 4.0367
43 1 4.8994 -5.5966 5.3264
44 1 6.0769 -4.5431 6.1681
45 1 6.2574 -7.5623 5.6531
46 1 6.5447 -6.6708 7.1852
47 1 9.6774 -5.2985 6.3558
48 1 10.0728 -10.0442 7.4523
49 1 8.7515 -4.9723 4.1903
50 1 8.1165 -6.4983 3.5178
51 1 3.2103 -1.9634 3.1814
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001364086372.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:28:55
Heat of formation + Delta-G solvation = -40.065988 kcal
Electronic energy + Delta-G solvation = -30701.237228 eV
Core-core repulsion = 26600.653056 eV
Total energy + Delta-G solvation = -4100.584172 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-41.83982 -40.58715 -39.48109 -37.96524 -36.22456 -35.59567 -34.48011 -33.56343
-32.09133 -30.59628 -30.28756 -29.87092 -28.03949 -27.28281 -26.81159 -24.50549
-23.49622 -22.94591 -21.73966 -21.23877 -20.37395 -19.73525 -19.20073 -18.76452
-17.34298 -16.99369 -16.81816 -16.75084 -16.66958 -16.14294 -16.06509 -15.57079
-15.19700 -15.07784 -14.76383 -14.71959 -14.64788 -14.61635 -14.18113 -14.05714
-13.82904 -13.58522 -13.25693 -13.16680 -13.12055 -13.06622 -12.82798 -12.78503
-12.51013 -12.41285 -12.20694 -12.17203 -12.10751 -11.78831 -11.57238 -11.43743
-11.23232 -10.96595 -10.75418 -10.51002 -10.30170 -9.76002 -9.15265 -8.35161
-8.12637 -6.50328 0.42580 0.69892 1.40792 1.42979 1.49081 1.71704
2.00444 2.21984 2.42842 2.86017 2.99692 3.00183 3.54368 3.74741
3.84480 3.98328 4.01991 4.17034 4.20742 4.23767 4.32197 4.39805
4.41822 4.48460 4.52580 4.61743 4.63742 4.71893 4.76154 4.78792
4.79645 4.84296 4.91981 4.93842 5.00807 5.04741 5.07756 5.08837
5.28113 5.32438 5.39651 5.40649 5.42825 5.51089 5.52785 5.71341
5.98929 6.03731 6.07437 6.44491 6.59693 6.60659 6.82778 7.10533
7.30537 7.39084 8.79005
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.026285 B = 0.002076 C = 0.001998
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1064.997402 B =13481.135264 C =14013.017448
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.134 3.866
3 C -0.159 4.159
4 N -0.626 5.626
5 C 0.086 3.914
6 C 0.233 3.767
7 C -0.219 4.219
8 C -0.056 4.056
9 C -0.206 4.206
10 C 0.201 3.799
11 N -0.671 5.671
12 C 0.716 3.284
13 O -0.615 6.615
14 N -0.626 5.626
15 C 0.106 3.894
16 C -0.127 4.127
17 C 0.220 3.780
18 O -0.569 6.569
19 C -0.553 4.553
20 H 0.033 0.967
21 C 0.034 3.966
22 N -0.936 5.936
23 Si 0.938 3.062
24 H -0.277 1.277
25 H -0.307 1.307
26 H -0.197 1.197
27 C 0.122 3.878
28 C -0.228 4.228
29 H 0.064 0.936
30 H 0.080 0.920
31 H 0.051 0.949
32 H 0.091 0.909
33 H 0.043 0.957
34 H 0.079 0.921
35 H 0.060 0.940
36 H 0.046 0.954
37 H 0.084 0.916
38 H 0.069 0.931
39 H 0.143 0.857
40 H 0.137 0.863
41 H 0.100 0.900
42 H 0.419 0.581
43 H 0.101 0.899
44 H 0.087 0.913
45 H 0.080 0.920
46 H 0.086 0.914
47 H 0.376 0.624
48 H 0.268 0.732
49 H 0.057 0.943
50 H 0.045 0.955
51 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.377 22.031 -8.439 33.213
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.031 3.969
3 C -0.217 4.217
4 N -0.337 5.337
5 C -0.056 4.056
6 C 0.130 3.870
7 C -0.241 4.241
8 C -0.075 4.075
9 C -0.229 4.229
10 C 0.106 3.894
11 N -0.320 5.320
12 C 0.419 3.581
13 O -0.495 6.495
14 N -0.362 5.362
15 C -0.016 4.016
16 C -0.165 4.165
17 C 0.180 3.820
18 O -0.376 6.376
19 C -0.591 4.591
20 H 0.051 0.949
21 C -0.166 4.166
22 N -0.575 5.575
23 Si 0.763 3.237
24 H -0.204 1.204
25 H -0.235 1.235
26 H -0.119 1.119
27 C -0.002 4.002
28 C -0.253 4.253
29 H 0.083 0.917
30 H 0.098 0.902
31 H 0.070 0.930
32 H 0.109 0.891
33 H 0.062 0.938
34 H 0.098 0.902
35 H 0.079 0.921
36 H 0.065 0.935
37 H 0.103 0.897
38 H 0.088 0.912
39 H 0.160 0.840
40 H 0.155 0.845
41 H 0.118 0.882
42 H 0.258 0.742
43 H 0.119 0.881
44 H 0.105 0.895
45 H 0.098 0.902
46 H 0.105 0.895
47 H 0.224 0.776
48 H 0.077 0.923
49 H 0.075 0.925
50 H 0.064 0.936
51 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -23.519 22.112 -8.751 33.446
hybrid contribution 1.058 -0.846 0.667 1.510
sum -22.461 21.266 -8.084 31.970
Atomic orbital electron populations
1.22137 0.93986 1.02229 1.03246 1.21217 0.94813 0.93024 0.87868
1.22155 1.00786 0.95753 1.03045 1.46670 1.48517 1.31786 1.06743
1.21722 1.00445 1.00128 0.83319 1.17580 0.89117 0.87323 0.92982
1.20855 1.05496 1.01353 0.96424 1.20916 0.94091 0.94508 0.98027
1.20900 1.05564 1.03940 0.92452 1.17370 0.93961 0.92314 0.85782
1.42435 1.13929 1.61411 1.14221 1.15515 0.81712 0.78561 0.82322
1.90899 1.60978 1.65093 1.32539 1.47707 1.17161 1.56900 1.14467
1.22558 0.97096 0.98263 0.83680 1.23082 0.94111 0.97787 1.01523
1.19759 0.91142 0.86843 0.84305 1.86467 1.32315 1.68104 1.50729
1.21410 1.38049 1.05271 0.94327 0.94855 1.25822 0.93613 0.93791
1.03365 1.70089 1.36807 1.19378 1.31188 0.86098 0.77671 0.82820
0.77157 1.20375 1.23505 1.11873 1.22378 0.82607 0.95752 0.99454
1.20325 1.06359 0.99483 0.99120 0.91730 0.90159 0.92955 0.89089
0.93809 0.90173 0.92125 0.93521 0.89730 0.91247 0.83977 0.84538
0.88168 0.74222 0.88068 0.89485 0.90162 0.89547 0.77575 0.92349
0.92492 0.93642 0.84141
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.21 9.08 71.98 0.65 -0.55 16
2 C 0.13 1.45 3.20 44.99 0.14 1.59 16
3 C -0.16 -1.52 9.26 71.98 0.67 -0.85 16
4 N -0.63 -9.15 2.90 -698.15 -2.02 -11.17 16
5 C 0.09 0.93 9.28 127.77 1.19 2.11 16
6 C 0.23 4.73 6.53 38.20 0.25 4.97 16
7 C -0.22 -4.48 9.31 22.42 0.21 -4.27 16
8 C -0.06 -1.37 10.03 22.23 0.22 -1.15 16
9 C -0.21 -6.35 8.65 22.42 0.19 -6.15 16
10 C 0.20 5.65 6.26 38.12 0.24 5.89 16
11 N -0.67 -18.66 5.29 -317.25 -1.68 -20.33 16
12 C 0.72 26.09 8.23 179.05 1.47 27.56 16
13 O -0.62 -27.39 14.40 -3.98 -0.06 -27.45 16
14 N -0.63 -22.21 3.34 -828.94 -2.77 -24.98 16
15 C 0.11 3.01 6.55 86.79 0.57 3.57 16
16 C -0.13 -4.63 5.03 31.98 0.16 -4.46 16
17 C 0.22 9.46 0.67 -10.35 -0.01 9.45 16
18 O -0.57 -22.85 10.08 -148.98 -1.50 -24.35 16
19 C -0.55 -29.88 8.82 25.60 0.23 -29.65 16
20 H 0.03 2.05 7.77 -2.91 -0.02 2.03 16
21 C 0.03 1.91 5.46 84.66 0.46 2.37 16
22 N -0.94 -56.72 13.96 21.45 0.30 -56.42 16
23 Si 0.94 42.00 24.57 68.60 1.69 43.69 16
24 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16
25 H -0.31 -14.23 7.11 99.48 0.71 -13.52 16
26 H -0.20 -8.02 4.78 99.48 0.48 -7.54 16
27 C 0.12 5.08 6.20 86.73 0.54 5.62 16
28 C -0.23 -5.05 9.07 22.52 0.20 -4.85 16
29 H 0.06 0.43 6.53 -2.39 -0.02 0.41 16
30 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16
31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16
32 H 0.09 1.01 5.31 -2.39 -0.01 0.99 16
33 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16
34 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16
35 H 0.06 0.54 7.78 -2.39 -0.02 0.52 16
36 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16
37 H 0.08 0.61 6.21 -2.39 -0.01 0.59 16
38 H 0.07 0.73 6.46 -2.39 -0.02 0.71 16
39 H 0.14 2.19 5.74 -2.91 -0.02 2.17 16
40 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16
41 H 0.10 3.70 6.45 -2.91 -0.02 3.68 16
42 H 0.42 8.61 7.38 -92.71 -0.68 7.93 16
43 H 0.10 2.13 7.39 -2.39 -0.02 2.11 16
44 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16
45 H 0.08 3.04 8.05 -2.38 -0.02 3.02 16
46 H 0.09 3.02 5.04 -2.39 -0.01 3.01 16
47 H 0.38 13.52 9.08 -74.06 -0.67 12.85 16
48 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16
49 H 0.06 2.35 8.06 -2.38 -0.02 2.33 16
50 H 0.05 2.12 7.62 -2.39 -0.02 2.10 16
51 H 0.14 2.49 6.31 -2.91 -0.02 2.47 16
Total: -1.00 -74.10 391.53 0.73 -73.37
By element:
Atomic # 1 Polarization: 37.07 SS G_CDS: -0.62 Total: 36.45 kcal
Atomic # 6 Polarization: 3.81 SS G_CDS: 7.39 Total: 11.20 kcal
Atomic # 7 Polarization: -106.73 SS G_CDS: -6.17 Total: -112.90 kcal
Atomic # 8 Polarization: -50.24 SS G_CDS: -1.56 Total: -51.80 kcal
Atomic # 14 Polarization: 42.00 SS G_CDS: 1.69 Total: 43.69 kcal
Total: -74.10 0.73 -73.37 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001364086372.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.299 kcal
(2) G-P(sol) polarization free energy of solvation -74.096 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.797 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.365 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.066 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds