Wall clock time and date at job start Wed Apr 1 2020 04:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47070 * 2 1 4 4 N 1.46900 * 109.47006 * 179.97438 * 3 2 1 5 5 C 1.46895 * 111.00299 * 293.95270 * 4 3 2 6 6 C 1.39924 * 110.99789 * 170.00115 * 4 3 2 7 7 C 1.38706 * 120.10197 * 60.02168 * 6 4 3 8 8 C 1.38229 * 119.99732 * 179.97438 * 7 6 4 9 9 C 1.38275 * 120.18824 * 359.97438 * 8 7 6 10 10 C 1.38254 * 120.19887 * 359.72519 * 9 8 7 11 11 C 1.38650 * 119.99856 * 0.55123 * 10 9 8 12 12 N 1.40205 * 120.09653 * 179.72121 * 11 10 9 13 13 C 1.34780 * 119.99634 * 34.72417 * 12 11 10 14 14 O 1.21601 * 120.00157 * 355.22162 * 13 12 11 15 15 N 1.34776 * 120.00227 * 175.22456 * 13 12 11 16 16 C 1.47430 * 125.64576 * 0.02562 * 15 13 12 17 17 C 1.54909 * 104.83133 * 204.09422 * 16 15 13 18 18 C 1.55151 * 101.58222 * 322.98995 * 17 16 15 19 19 O 1.42901 * 110.72432 * 277.13791 * 18 17 16 20 20 C 1.50704 * 110.72104 * 154.03960 * 18 17 16 21 21 H 1.08004 * 119.99607 * 0.02562 * 20 18 17 22 22 C 1.37874 * 120.00259 * 179.97438 * 20 18 17 23 23 N 1.31510 * 120.00089 * 0.02562 * 22 20 18 24 24 Si 1.86803 * 120.00107 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47030 * 59.99912 * 24 22 20 26 26 H 1.48497 * 109.47166 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47074 * 300.00059 * 24 22 20 28 28 C 1.47015 * 125.65074 * 179.71774 * 15 13 12 29 29 H 1.09002 * 109.47586 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47808 * 300.00322 * 1 2 3 31 31 H 1.09005 * 109.46993 * 60.00437 * 1 2 3 32 32 H 1.08997 * 109.47403 * 239.99548 * 2 1 3 33 33 H 1.09006 * 109.46473 * 119.99482 * 2 1 3 34 34 H 1.08999 * 109.47103 * 59.99988 * 3 2 1 35 35 H 1.08996 * 109.46812 * 299.99614 * 3 2 1 36 36 H 1.09005 * 109.47170 * 296.04873 * 5 4 3 37 37 H 1.09001 * 109.47379 * 56.04498 * 5 4 3 38 38 H 1.08994 * 109.47325 * 176.04786 * 5 4 3 39 39 H 1.07998 * 120.00023 * 359.95744 * 7 6 4 40 40 H 1.07997 * 119.90604 * 179.97438 * 8 7 6 41 41 H 1.07997 * 119.90343 * 180.02562 * 9 8 7 42 42 H 1.07996 * 119.99792 * 180.27738 * 10 9 8 43 43 H 0.96996 * 120.00244 * 214.45043 * 12 11 10 44 44 H 1.09004 * 110.36438 * 322.93482 * 16 15 13 45 45 H 1.08997 * 110.36421 * 85.25341 * 16 15 13 46 46 H 1.09005 * 110.99980 * 81.06811 * 17 16 15 47 47 H 1.09000 * 111.00083 * 204.87720 * 17 16 15 48 48 H 0.96699 * 114.00011 * 180.02562 * 19 18 17 49 49 H 0.97000 * 120.00424 * 179.97438 * 23 22 20 50 50 H 1.09001 * 109.88666 * 298.38803 * 28 15 13 51 51 H 1.09000 * 109.88264 * 59.55713 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0349 0.8859 1.2542 6 6 4.0105 2.7289 -0.2262 7 6 3.6996 3.7608 0.6471 8 6 4.1966 5.0307 0.4213 9 6 5.0045 5.2766 -0.6736 10 6 5.3244 4.2527 -1.5458 11 6 4.8256 2.9771 -1.3301 12 7 5.1440 1.9385 -2.2165 13 6 6.3578 1.9000 -2.8011 14 8 7.1451 2.8105 -2.6285 15 7 6.6991 0.8522 -3.5772 16 6 5.8457 -0.3137 -3.8705 17 6 6.8358 -1.4484 -4.2338 18 6 7.9294 -0.6702 -5.0120 19 8 7.5449 -0.4856 -6.3759 20 6 9.2545 -1.3829 -4.9254 21 1 9.3353 -2.3073 -4.3728 22 6 10.3633 -0.8553 -5.5525 23 7 10.2647 0.2700 -6.2258 24 14 12.0056 -1.7391 -5.4458 25 1 11.8753 -3.0980 -6.0304 26 1 13.0303 -0.9720 -6.1985 27 1 12.4167 -1.8496 -4.0232 28 6 7.9815 0.6856 -4.2764 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.7435 1.5265 2.0866 37 1 3.6292 -0.1143 1.4061 38 1 5.1222 0.8326 1.2001 39 1 3.0690 3.5720 1.5034 40 1 3.9533 5.8330 1.1020 41 1 5.3906 6.2704 -0.8454 42 1 5.9593 4.4474 -2.3974 43 1 4.4922 1.2456 -2.4059 44 1 5.2615 -0.5868 -2.9918 45 1 5.1880 -0.0999 -4.7130 46 1 7.2481 -1.9093 -3.3361 47 1 6.3588 -2.1942 -4.8697 48 1 8.1950 -0.0046 -6.9061 49 1 11.0448 0.6414 -6.6667 50 1 8.1201 1.4939 -4.9944 51 1 8.7992 0.6830 -3.5556 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413606002.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:09 Heat of formation + Delta-G solvation = -37.678233 kcal Electronic energy + Delta-G solvation = -31552.248810 eV Core-core repulsion = 27451.768179 eV Total energy + Delta-G solvation = -4100.480631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.61887 -39.32547 -37.62971 -36.86492 -34.40293 -34.24504 -33.47685 -32.16501 -30.45081 -29.76929 -28.93085 -27.73839 -27.24436 -25.18597 -24.81461 -23.19561 -22.34260 -21.48070 -20.71766 -19.66021 -19.38533 -17.99345 -17.20033 -17.04685 -16.61467 -15.73456 -15.65432 -15.40765 -15.01073 -14.84900 -14.72100 -14.41285 -14.12456 -13.87479 -13.55032 -13.27471 -13.23429 -12.92592 -12.84082 -12.64557 -12.43041 -12.19973 -12.10957 -11.89451 -11.75412 -11.65434 -11.52515 -11.47484 -11.22981 -11.04147 -10.80820 -10.80063 -10.65263 -10.52559 -10.21973 -10.07517 -9.56583 -9.34456 -8.75088 -8.68293 -8.66494 -8.33243 -8.11302 -7.67122 -6.29512 -4.38104 1.28758 1.43872 3.01241 3.23118 3.28400 3.30425 3.51951 3.61779 3.92028 4.25505 4.37177 4.63500 4.75750 4.89978 4.97866 5.03110 5.06554 5.12582 5.17061 5.24161 5.32420 5.38144 5.45156 5.48035 5.58171 5.62059 5.70281 5.72135 5.77886 5.80679 5.87046 5.96590 6.02040 6.02860 6.08277 6.28921 6.33840 6.49532 6.55962 6.70086 6.72362 6.72868 6.85936 6.92809 6.97895 7.23138 7.30860 7.39436 7.58139 7.73397 8.00860 8.41802 8.64835 9.00709 9.30760 9.43389 10.78291 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.002841 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.223891 B = 9854.201809 C =11034.668601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.058 3.942 4 N -0.503 5.503 5 C 0.030 3.970 6 C 0.047 3.953 7 C -0.131 4.131 8 C -0.138 4.138 9 C -0.102 4.102 10 C -0.119 4.119 11 C 0.204 3.796 12 N -0.677 5.677 13 C 0.713 3.287 14 O -0.584 6.584 15 N -0.623 5.623 16 C 0.100 3.900 17 C -0.115 4.115 18 C 0.250 3.750 19 O -0.586 6.586 20 C -0.538 4.538 21 H 0.067 0.933 22 C 0.071 3.929 23 N -0.896 5.896 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.275 1.275 28 C 0.120 3.880 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.147 0.853 43 H 0.409 0.591 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.386 0.614 49 H 0.272 0.728 50 H 0.063 0.937 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.471 3.440 12.846 21.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.068 4.068 4 N -0.224 5.224 5 C -0.117 4.117 6 C -0.050 4.050 7 C -0.151 4.151 8 C -0.158 4.158 9 C -0.121 4.121 10 C -0.140 4.140 11 C 0.106 3.894 12 N -0.324 5.324 13 C 0.416 3.584 14 O -0.462 6.462 15 N -0.359 5.359 16 C -0.023 4.023 17 C -0.153 4.153 18 C 0.209 3.791 19 O -0.397 6.397 20 C -0.576 4.576 21 H 0.085 0.915 22 C -0.132 4.132 23 N -0.535 5.535 24 Si 0.732 3.268 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.200 1.200 28 C -0.002 4.002 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.164 0.836 43 H 0.246 0.754 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.238 0.762 49 H 0.082 0.918 50 H 0.081 0.919 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.102 3.555 12.637 21.560 hybrid contribution 0.859 0.107 0.536 1.019 sum -16.243 3.662 13.173 21.232 Atomic orbital electron populations 1.21730 0.95552 1.01836 1.01747 1.21568 0.95413 0.96146 1.02939 1.22260 0.86066 0.97377 1.01134 1.59503 1.07782 1.19151 1.35942 1.22449 1.01157 0.99513 0.88594 1.18477 1.02525 0.89310 0.94658 1.21283 1.01168 0.93502 0.99172 1.20913 0.99725 0.96482 0.98638 1.21085 0.97508 0.98973 0.94533 1.21427 1.00617 0.90432 1.01523 1.17414 0.95887 0.87414 0.88711 1.42597 1.15429 1.28202 1.46188 1.15525 0.81423 0.82500 0.78972 1.90877 1.51386 1.37495 1.66457 1.47956 1.19244 1.19247 1.49418 1.22303 0.94089 0.86757 0.99132 1.22725 0.96291 0.96233 1.00081 1.19476 0.91347 0.88396 0.79881 1.86071 1.50389 1.80455 1.22750 1.21480 0.93083 1.09130 1.33899 0.91527 1.25073 0.99563 0.94525 0.94082 1.69560 1.31504 1.18923 1.33489 0.86442 0.82331 0.79620 0.78412 1.19978 1.21053 1.20016 1.22963 0.81329 1.00808 0.95127 0.92440 0.92982 0.92588 0.90886 0.91842 0.94558 0.90700 0.95270 0.90775 0.91143 0.86502 0.86383 0.85850 0.83568 0.75413 0.92202 0.91857 0.90542 0.90494 0.76170 0.91817 0.91865 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.12 -0.94 5.87 -26.73 -0.16 -1.09 16 3 C 0.06 0.52 4.54 -3.82 -0.02 0.50 16 4 N -0.50 -5.52 4.22 -178.77 -0.75 -6.27 16 5 C 0.03 0.29 9.19 60.06 0.55 0.85 16 6 C 0.05 0.60 4.70 -83.54 -0.39 0.21 16 7 C -0.13 -1.47 8.66 -39.41 -0.34 -1.81 16 8 C -0.14 -1.52 10.04 -39.57 -0.40 -1.92 16 9 C -0.10 -1.28 10.04 -39.56 -0.40 -1.68 16 10 C -0.12 -1.85 8.70 -39.42 -0.34 -2.19 16 11 C 0.20 3.12 6.33 -83.42 -0.53 2.59 16 12 N -0.68 -10.97 5.13 -14.07 -0.07 -11.04 16 13 C 0.71 14.47 8.34 -86.92 -0.72 13.75 16 14 O -0.58 -13.69 14.09 5.28 0.07 -13.61 16 15 N -0.62 -12.81 3.33 -176.22 -0.59 -13.39 16 16 C 0.10 1.74 6.53 -2.53 -0.02 1.73 16 17 C -0.12 -2.26 6.23 -24.59 -0.15 -2.41 16 18 C 0.25 5.97 0.86 -89.93 -0.08 5.90 16 19 O -0.59 -14.68 13.07 -35.23 -0.46 -15.14 16 20 C -0.54 -13.93 8.12 -34.44 -0.28 -14.21 16 21 H 0.07 1.69 7.76 -52.48 -0.41 1.28 16 22 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 23 N -0.90 -23.71 10.97 55.43 0.61 -23.11 16 24 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 C 0.12 2.89 5.54 -3.06 -0.02 2.87 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.47 6.47 -51.93 -0.34 0.13 16 34 H 0.04 0.30 7.48 -51.93 -0.39 -0.09 16 35 H 0.07 0.70 8.06 -51.93 -0.42 0.29 16 36 H 0.03 0.26 7.35 -51.93 -0.38 -0.12 16 37 H 0.07 0.62 6.30 -51.93 -0.33 0.30 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.12 1.09 7.14 -52.49 -0.37 0.72 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 42 H 0.15 2.60 6.19 -52.49 -0.32 2.28 16 43 H 0.41 5.84 7.04 -40.82 -0.29 5.55 16 44 H 0.06 0.86 7.37 -51.93 -0.38 0.48 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 47 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 48 H 0.39 10.00 6.98 45.56 0.32 10.32 16 49 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 50 H 0.06 1.66 8.07 -51.93 -0.42 1.25 16 51 H 0.06 1.71 7.82 -51.93 -0.41 1.30 16 LS Contribution 404.00 15.07 6.09 6.09 Total: -1.00 -29.06 404.00 -10.63 -39.69 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -7.49 Total: 17.21 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -3.02 Total: 4.20 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.80 Total: -53.81 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.39 Total: -28.75 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -29.06 -10.63 -39.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413606002.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.014 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds