Wall clock time and date at job start Wed Apr 1 2020 05:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47140 * 2 1 4 4 N 1.46502 * 109.46776 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99939 * 90.00100 * 4 3 2 6 6 O 1.21283 * 119.99506 * 179.97438 * 5 4 3 7 7 C 1.50691 * 120.00106 * 359.97438 * 5 4 3 8 8 C 1.52997 * 109.47206 * 180.02562 * 7 5 4 9 9 N 1.46506 * 109.47380 * 180.02562 * 8 7 5 10 10 C 1.35762 * 119.62081 * 269.97551 * 9 8 7 11 11 C 1.35350 * 120.70277 * 179.97438 * 10 9 8 12 12 C 1.40189 * 119.94703 * 0.06727 * 11 10 9 13 13 C 1.36405 * 119.26539 * 359.95564 * 12 11 10 14 14 C 1.34659 * 119.62817 * 89.99315 * 9 8 7 15 15 O 1.22062 * 119.98333 * 0.02562 * 14 9 8 16 16 C 1.46502 * 119.99780 * 269.99581 * 4 3 2 17 17 H 1.09002 * 110.88606 * 359.30245 * 16 4 3 18 18 C 1.55159 * 110.99949 * 123.18306 * 16 4 3 19 19 C 1.54328 * 102.93942 * 153.57745 * 18 16 4 20 20 N 1.47017 * 107.27135 * 337.80460 * 19 18 16 21 21 C 1.36938 * 125.65022 * 178.99688 * 20 19 18 22 22 H 1.07998 * 120.00128 * 179.97438 * 21 20 19 23 23 C 1.38811 * 119.99796 * 359.97438 * 21 20 19 24 24 N 1.31618 * 119.99849 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99958 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47012 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47060 * 120.00247 * 25 23 21 28 28 H 1.48503 * 109.47135 * 239.99969 * 25 23 21 29 29 C 1.47467 * 108.72286 * 358.97546 * 20 19 18 30 30 H 1.08999 * 109.47349 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47186 * 300.00367 * 1 2 3 32 32 H 1.09002 * 109.46887 * 60.00164 * 1 2 3 33 33 H 1.09001 * 109.47186 * 239.99633 * 2 1 3 34 34 H 1.09001 * 109.46751 * 120.00374 * 2 1 3 35 35 H 1.08995 * 109.46999 * 59.99665 * 3 2 1 36 36 H 1.09002 * 109.47096 * 299.99707 * 3 2 1 37 37 H 1.09000 * 109.47178 * 59.99915 * 7 5 4 38 38 H 1.09006 * 109.47346 * 299.99891 * 7 5 4 39 39 H 1.09000 * 109.47351 * 59.99739 * 8 7 5 40 40 H 1.09007 * 109.46789 * 299.99501 * 8 7 5 41 41 H 1.08005 * 119.64737 * 0.02562 * 10 9 8 42 42 H 1.08001 * 120.02615 * 180.02562 * 11 10 9 43 43 H 1.08003 * 120.37140 * 180.22722 * 12 11 10 44 44 H 1.08001 * 120.34761 * 180.02562 * 13 12 11 45 45 H 1.08998 * 110.72322 * 271.93661 * 18 16 4 46 46 H 1.08994 * 110.72182 * 35.21410 * 18 16 4 47 47 H 1.09000 * 109.88226 * 97.22757 * 19 18 16 48 48 H 1.09005 * 109.88038 * 218.38774 * 19 18 16 49 49 H 0.97011 * 119.99927 * 179.97438 * 24 23 21 50 50 H 1.08999 * 110.35106 * 265.25252 * 29 20 19 51 51 H 1.09002 * 110.40648 * 142.91464 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1795 1.4422 -1.1663 6 8 5.3923 1.4426 -1.1657 7 6 3.4266 1.4415 -2.4717 8 6 4.4213 1.4407 -3.6342 9 7 3.6893 1.4407 -4.9033 10 6 3.3540 0.2604 -5.4845 11 6 2.6775 0.2348 -6.6565 12 6 2.3173 1.4361 -7.2830 13 6 2.6554 2.6209 -6.6978 14 6 3.3571 2.6112 -5.4802 15 8 3.6663 3.6641 -4.9458 16 6 4.2370 1.4426 1.2697 17 1 3.5490 1.4553 2.1151 18 6 5.2015 0.2303 1.3555 19 6 6.3010 0.7307 2.3159 20 7 6.2700 2.2003 2.2870 21 6 7.0778 3.0301 3.0179 22 1 6.9767 4.1013 2.9251 23 6 8.0265 2.4944 3.8780 24 7 8.1501 1.1889 3.9906 25 14 9.1279 3.6264 4.8755 26 1 8.7910 5.0400 4.5702 27 1 8.9198 3.3699 6.3233 28 1 10.5482 3.3690 4.5264 29 6 5.2255 2.6332 1.3403 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6768 1.9563 -0.8900 37 1 2.7996 2.3312 -2.5300 38 1 2.8002 0.5512 -2.5294 39 1 5.0479 0.5508 -3.5757 40 1 5.0479 2.3308 -3.5767 41 1 3.6294 -0.6679 -5.0061 42 1 2.4160 -0.7103 -7.1090 43 1 1.7742 1.4236 -8.2164 44 1 2.3863 3.5567 -7.1650 45 1 4.6923 -0.6390 1.7718 46 1 5.6204 0.0006 0.3759 47 1 6.1002 0.3754 3.3267 48 1 7.2753 0.3738 1.9821 49 1 8.8134 0.8145 4.5914 50 1 5.6593 2.8249 0.3589 51 1 4.7202 3.5241 1.7133 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493956911.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:25 Heat of formation + Delta-G solvation = -3.462664 kcal Electronic energy + Delta-G solvation = -31361.555167 eV Core-core repulsion = 27262.558235 eV Total energy + Delta-G solvation = -4098.996932 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.61738 -40.15362 -37.13507 -36.95793 -36.01016 -35.24950 -33.06187 -31.99231 -31.15578 -30.07732 -29.04405 -27.42682 -26.27373 -25.33167 -24.29813 -23.85204 -22.55887 -21.88031 -20.84443 -19.97736 -18.73680 -17.85158 -17.56132 -16.94528 -16.84809 -16.45732 -16.06796 -15.60778 -15.53341 -14.93308 -14.67985 -14.52890 -14.41411 -14.00576 -13.92591 -13.69017 -13.26833 -12.94107 -12.84778 -12.64732 -12.42797 -12.34970 -12.28708 -12.15787 -12.01036 -11.80442 -11.65316 -11.58653 -11.40647 -10.91029 -10.84294 -10.79971 -10.60749 -10.46759 -10.27616 -10.13723 -10.00385 -9.86330 -9.59717 -9.13698 -8.55101 -8.33194 -8.26322 -6.69032 -5.61638 -2.93867 0.52713 1.59120 2.31525 2.75787 3.10280 3.40017 3.45931 3.51444 3.54035 4.22301 4.36328 4.46847 4.57095 4.59825 4.61068 4.68560 4.75076 4.85244 4.92167 5.00536 5.06583 5.14137 5.23021 5.39692 5.45405 5.47659 5.52099 5.60091 5.64770 5.65509 5.67734 5.77519 5.80282 5.81875 5.86998 5.94176 5.95527 6.06662 6.21835 6.24755 6.52973 6.63223 6.69843 6.77177 6.82591 7.24200 7.57435 7.66892 7.75650 7.81474 7.92372 8.33787 8.38130 9.32143 9.92442 10.59262 11.50236 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013480 B = 0.002603 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.614734 B =10756.013582 C =11958.972840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.143 4.143 3 C 0.107 3.893 4 N -0.601 5.601 5 C 0.515 3.485 6 O -0.514 6.514 7 C -0.154 4.154 8 C 0.104 3.896 9 N -0.494 5.494 10 C 0.137 3.863 11 C -0.239 4.239 12 C -0.018 4.018 13 C -0.245 4.245 14 C 0.509 3.491 15 O -0.546 6.546 16 C 0.131 3.869 17 H 0.090 0.910 18 C -0.153 4.153 19 C 0.186 3.814 20 N -0.602 5.602 21 C -0.221 4.221 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.923 5.923 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.126 3.874 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.162 0.838 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.146 0.854 45 H 0.053 0.947 46 H 0.075 0.925 47 H 0.043 0.957 48 H 0.042 0.958 49 H 0.250 0.750 50 H 0.044 0.956 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.408 -7.232 -20.294 28.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.181 4.181 3 C -0.017 4.017 4 N -0.334 5.334 5 C 0.302 3.698 6 O -0.390 6.390 7 C -0.195 4.195 8 C -0.018 4.018 9 N -0.205 5.205 10 C 0.010 3.990 11 C -0.262 4.262 12 C -0.040 4.040 13 C -0.267 4.267 14 C 0.311 3.689 15 O -0.428 6.428 16 C 0.028 3.972 17 H 0.108 0.892 18 C -0.192 4.192 19 C 0.060 3.940 20 N -0.329 5.329 21 C -0.349 4.349 22 H 0.095 0.905 23 C -0.207 4.207 24 N -0.572 5.572 25 Si 0.742 3.258 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.218 1.218 29 C -0.001 4.001 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.130 0.870 41 H 0.179 0.821 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.164 0.836 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -18.340 -6.526 -19.736 27.721 hybrid contribution 0.359 0.344 0.529 0.726 sum -17.981 -6.182 -19.207 27.026 Atomic orbital electron populations 1.21709 0.95193 1.01909 1.01950 1.21982 0.95958 0.97286 1.02906 1.21689 0.79852 0.96822 1.03303 1.47943 1.06095 1.73157 1.06192 1.20123 0.87997 0.76989 0.84705 1.90787 1.13356 1.47858 1.86972 1.22007 0.99625 1.04851 0.92973 1.21781 0.93762 1.06938 0.79276 1.45667 1.46630 1.06838 1.21339 1.22042 0.93458 0.89718 0.93821 1.20646 1.08254 0.99568 0.97738 1.21436 0.92601 0.91977 0.97940 1.22152 1.07011 1.00118 0.97447 1.17229 0.81926 0.82902 0.86867 1.91008 1.56495 1.29482 1.65786 1.22428 0.93282 0.98478 0.83011 0.89158 1.23235 0.97994 0.95929 1.02029 1.21042 0.94292 0.83323 0.95299 1.44338 1.38911 1.02057 1.47561 1.19104 1.10753 0.89020 1.16042 0.90512 1.24788 0.99640 0.96011 1.00265 1.69985 1.37226 1.09053 1.40890 0.86042 0.80466 0.79600 0.79683 1.20555 1.21864 1.21812 1.21876 0.89647 0.93537 0.95025 0.92500 0.92410 0.92733 0.92001 0.91120 0.90066 0.90666 0.88300 0.88793 0.88021 0.87007 0.82089 0.83840 0.84937 0.83577 0.92862 0.90623 0.93857 0.93995 0.93948 0.93793 0.95053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.14 -1.19 6.26 -26.73 -0.17 -1.36 16 3 C 0.11 1.06 5.20 -4.04 -0.02 1.04 16 4 N -0.60 -8.49 2.56 -163.68 -0.42 -8.91 16 5 C 0.52 7.64 6.95 -10.99 -0.08 7.56 16 6 O -0.51 -9.91 12.02 5.56 0.07 -9.84 16 7 C -0.15 -1.62 4.58 -27.89 -0.13 -1.75 16 8 C 0.10 1.14 4.62 -4.04 -0.02 1.12 16 9 N -0.49 -4.78 2.58 -119.77 -0.31 -5.09 16 10 C 0.14 0.84 10.28 -16.84 -0.17 0.67 16 11 C -0.24 -1.24 10.01 -39.88 -0.40 -1.64 16 12 C -0.02 -0.11 10.10 -39.51 -0.40 -0.51 16 13 C -0.25 -2.26 9.99 -39.38 -0.39 -2.65 16 14 C 0.51 6.26 7.41 -15.45 -0.11 6.15 16 15 O -0.55 -9.13 16.64 4.86 0.08 -9.05 16 16 C 0.13 2.37 3.55 -65.78 -0.23 2.14 16 17 H 0.09 1.53 7.88 -51.93 -0.41 1.12 16 18 C -0.15 -3.06 6.31 -24.89 -0.16 -3.21 16 19 C 0.19 4.78 5.37 -3.06 -0.02 4.76 16 20 N -0.60 -16.40 3.40 -170.04 -0.58 -16.98 16 21 C -0.22 -6.50 10.28 -15.06 -0.15 -6.65 16 22 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 23 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 24 N -0.92 -28.19 10.31 55.49 0.57 -27.62 16 25 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 29 C 0.13 2.86 6.61 -2.51 -0.02 2.85 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.50 7.22 -51.93 -0.37 0.12 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.78 7.95 -51.93 -0.41 0.36 16 36 H 0.08 0.63 6.44 -51.93 -0.33 0.30 16 37 H 0.10 1.08 7.40 -51.93 -0.38 0.70 16 38 H 0.09 0.73 7.18 -51.93 -0.37 0.35 16 39 H 0.10 0.98 7.97 -51.93 -0.41 0.56 16 40 H 0.11 1.59 7.34 -51.93 -0.38 1.21 16 41 H 0.16 0.51 8.04 -52.48 -0.42 0.08 16 42 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 43 H 0.13 0.45 8.06 -52.48 -0.42 0.02 16 44 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.08 1.58 5.98 -51.93 -0.31 1.27 16 47 H 0.04 1.20 7.38 -51.93 -0.38 0.82 16 48 H 0.04 1.21 7.50 -51.93 -0.39 0.83 16 49 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 50 H 0.04 1.08 5.81 -51.93 -0.30 0.78 16 51 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 404.55 15.07 6.10 6.10 Total: -1.00 -37.46 404.55 -9.95 -47.42 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -8.24 Total: -1.50 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -2.20 Total: 7.46 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -0.73 Total: -58.60 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.15 Total: -18.89 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.46 -9.95 -47.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493956911.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.953 kcal (2) G-P(sol) polarization free energy of solvation -37.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds