Wall clock time and date at job start Wed Apr 1 2020 05:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47140 * 2 1 4 4 N 1.46502 * 109.46776 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99939 * 90.00100 * 4 3 2 6 6 O 1.21283 * 119.99506 * 179.97438 * 5 4 3 7 7 C 1.50691 * 120.00106 * 359.97438 * 5 4 3 8 8 C 1.52997 * 109.47206 * 180.02562 * 7 5 4 9 9 N 1.46506 * 109.47380 * 180.02562 * 8 7 5 10 10 C 1.35762 * 119.62081 * 269.97551 * 9 8 7 11 11 C 1.35350 * 120.70277 * 179.97438 * 10 9 8 12 12 C 1.40189 * 119.94703 * 0.06727 * 11 10 9 13 13 C 1.36405 * 119.26539 * 359.95564 * 12 11 10 14 14 C 1.34659 * 119.62817 * 89.99315 * 9 8 7 15 15 O 1.22062 * 119.98333 * 0.02562 * 14 9 8 16 16 C 1.46502 * 119.99780 * 269.99581 * 4 3 2 17 17 H 1.09002 * 110.88606 * 359.30245 * 16 4 3 18 18 C 1.55159 * 110.99949 * 123.18306 * 16 4 3 19 19 C 1.54328 * 102.93942 * 153.57745 * 18 16 4 20 20 N 1.47017 * 107.27135 * 337.80460 * 19 18 16 21 21 C 1.36938 * 125.65022 * 178.99688 * 20 19 18 22 22 H 1.07998 * 120.00128 * 179.97438 * 21 20 19 23 23 C 1.38811 * 119.99796 * 359.97438 * 21 20 19 24 24 N 1.31618 * 119.99849 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99958 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47012 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47060 * 120.00247 * 25 23 21 28 28 H 1.48503 * 109.47135 * 239.99969 * 25 23 21 29 29 C 1.47467 * 108.72286 * 358.97546 * 20 19 18 30 30 H 1.08999 * 109.47349 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47186 * 300.00367 * 1 2 3 32 32 H 1.09002 * 109.46887 * 60.00164 * 1 2 3 33 33 H 1.09001 * 109.47186 * 239.99633 * 2 1 3 34 34 H 1.09001 * 109.46751 * 120.00374 * 2 1 3 35 35 H 1.08995 * 109.46999 * 59.99665 * 3 2 1 36 36 H 1.09002 * 109.47096 * 299.99707 * 3 2 1 37 37 H 1.09000 * 109.47178 * 59.99915 * 7 5 4 38 38 H 1.09006 * 109.47346 * 299.99891 * 7 5 4 39 39 H 1.09000 * 109.47351 * 59.99739 * 8 7 5 40 40 H 1.09007 * 109.46789 * 299.99501 * 8 7 5 41 41 H 1.08005 * 119.64737 * 0.02562 * 10 9 8 42 42 H 1.08001 * 120.02615 * 180.02562 * 11 10 9 43 43 H 1.08003 * 120.37140 * 180.22722 * 12 11 10 44 44 H 1.08001 * 120.34761 * 180.02562 * 13 12 11 45 45 H 1.08998 * 110.72322 * 271.93661 * 18 16 4 46 46 H 1.08994 * 110.72182 * 35.21410 * 18 16 4 47 47 H 1.09000 * 109.88226 * 97.22757 * 19 18 16 48 48 H 1.09005 * 109.88038 * 218.38774 * 19 18 16 49 49 H 0.97011 * 119.99927 * 179.97438 * 24 23 21 50 50 H 1.08999 * 110.35106 * 265.25252 * 29 20 19 51 51 H 1.09002 * 110.40648 * 142.91464 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1795 1.4422 -1.1663 6 8 5.3923 1.4426 -1.1657 7 6 3.4266 1.4415 -2.4717 8 6 4.4213 1.4407 -3.6342 9 7 3.6893 1.4407 -4.9033 10 6 3.3540 0.2604 -5.4845 11 6 2.6775 0.2348 -6.6565 12 6 2.3173 1.4361 -7.2830 13 6 2.6554 2.6209 -6.6978 14 6 3.3571 2.6112 -5.4802 15 8 3.6663 3.6641 -4.9458 16 6 4.2370 1.4426 1.2697 17 1 3.5490 1.4553 2.1151 18 6 5.2015 0.2303 1.3555 19 6 6.3010 0.7307 2.3159 20 7 6.2700 2.2003 2.2870 21 6 7.0778 3.0301 3.0179 22 1 6.9767 4.1013 2.9251 23 6 8.0265 2.4944 3.8780 24 7 8.1501 1.1889 3.9906 25 14 9.1279 3.6264 4.8755 26 1 8.7910 5.0400 4.5702 27 1 8.9198 3.3699 6.3233 28 1 10.5482 3.3690 4.5264 29 6 5.2255 2.6332 1.3403 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6768 1.9563 -0.8900 37 1 2.7996 2.3312 -2.5300 38 1 2.8002 0.5512 -2.5294 39 1 5.0479 0.5508 -3.5757 40 1 5.0479 2.3308 -3.5767 41 1 3.6294 -0.6679 -5.0061 42 1 2.4160 -0.7103 -7.1090 43 1 1.7742 1.4236 -8.2164 44 1 2.3863 3.5567 -7.1650 45 1 4.6923 -0.6390 1.7718 46 1 5.6204 0.0006 0.3759 47 1 6.1002 0.3754 3.3267 48 1 7.2753 0.3738 1.9821 49 1 8.8134 0.8145 4.5914 50 1 5.6593 2.8249 0.3589 51 1 4.7202 3.5241 1.7133 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493956911.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:24 Heat of formation + Delta-G solvation = -27.550550 kcal Electronic energy + Delta-G solvation = -31362.599697 eV Core-core repulsion = 27262.558235 eV Total energy + Delta-G solvation = -4100.041461 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.37647 -41.39634 -38.65028 -37.95095 -37.15764 -36.03190 -34.61424 -33.30669 -32.24626 -30.97651 -30.69242 -29.07509 -27.09809 -26.81743 -25.72280 -24.59815 -23.44088 -22.62226 -22.28701 -21.90048 -19.91812 -19.00514 -18.58711 -18.26052 -17.94085 -17.33124 -17.05827 -16.78494 -16.57499 -16.52378 -15.88096 -15.59562 -15.41852 -15.13596 -15.05600 -14.73019 -14.41662 -14.37310 -14.13858 -13.92883 -13.71935 -13.60472 -13.23237 -13.02802 -12.97690 -12.85747 -12.81837 -12.73252 -12.62806 -12.42793 -12.26157 -12.06878 -12.01336 -12.00593 -11.85001 -11.69118 -11.43050 -11.11279 -10.99736 -10.74591 -10.52788 -9.65594 -8.94358 -8.88638 -7.87522 -5.23421 -0.03753 0.96110 1.41722 1.44146 1.51417 1.54763 1.59589 2.01089 2.47906 2.72195 3.29330 3.43842 3.64075 3.66897 3.71914 3.86382 3.90080 3.97305 4.00140 4.06407 4.16477 4.21761 4.24271 4.31355 4.37968 4.43304 4.50216 4.58992 4.64765 4.68953 4.73151 4.75531 4.79730 4.91079 5.00242 5.01101 5.08671 5.11579 5.24294 5.25855 5.31026 5.39643 5.44301 5.50990 5.63678 5.67793 5.70941 5.75248 6.14409 6.16651 6.43830 7.02049 7.07249 7.19550 7.73689 8.39204 9.23058 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013480 B = 0.002603 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.614734 B =10756.013582 C =11958.972840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.101 3.899 4 N -0.597 5.597 5 C 0.510 3.490 6 O -0.566 6.566 7 C -0.135 4.135 8 C 0.108 3.892 9 N -0.491 5.491 10 C 0.128 3.872 11 C -0.226 4.226 12 C 0.009 3.991 13 C -0.282 4.282 14 C 0.490 3.510 15 O -0.615 6.615 16 C 0.153 3.847 17 H 0.110 0.890 18 C -0.134 4.134 19 C 0.195 3.805 20 N -0.623 5.623 21 C -0.244 4.244 22 H 0.077 0.923 23 C -0.067 4.067 24 N -0.951 5.951 25 Si 0.982 3.018 26 H -0.268 1.268 27 H -0.285 1.285 28 H -0.292 1.292 29 C 0.122 3.878 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.199 0.801 42 H 0.184 0.816 43 H 0.168 0.832 44 H 0.142 0.858 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.018 0.982 48 H -0.004 1.004 49 H 0.248 0.752 50 H 0.023 0.977 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.553 -9.345 -22.027 32.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C -0.021 4.021 4 N -0.329 5.329 5 C 0.299 3.701 6 O -0.445 6.445 7 C -0.175 4.175 8 C -0.014 4.014 9 N -0.200 5.200 10 C 0.002 3.998 11 C -0.248 4.248 12 C -0.013 4.013 13 C -0.304 4.304 14 C 0.295 3.705 15 O -0.503 6.503 16 C 0.048 3.952 17 H 0.128 0.872 18 C -0.173 4.173 19 C 0.069 3.931 20 N -0.350 5.350 21 C -0.373 4.373 22 H 0.095 0.905 23 C -0.260 4.260 24 N -0.600 5.600 25 Si 0.810 3.190 26 H -0.193 1.193 27 H -0.211 1.211 28 H -0.219 1.219 29 C -0.004 4.004 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.153 0.847 39 H 0.135 0.865 40 H 0.086 0.914 41 H 0.216 0.784 42 H 0.202 0.798 43 H 0.186 0.814 44 H 0.160 0.840 45 H 0.102 0.898 46 H 0.086 0.914 47 H 0.036 0.964 48 H 0.014 0.986 49 H 0.057 0.943 50 H 0.040 0.960 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -21.567 -8.678 -21.515 31.675 hybrid contribution 1.315 0.919 0.946 1.862 sum -20.252 -7.759 -20.569 29.890 Atomic orbital electron populations 1.21677 0.93575 1.02559 1.02523 1.21920 0.97192 0.95633 1.02770 1.22028 0.76720 0.98607 1.04704 1.47963 1.07850 1.72564 1.04483 1.20864 0.87604 0.75558 0.86061 1.90776 1.15874 1.50104 1.87759 1.21895 0.99064 1.06581 0.89948 1.21583 0.93866 1.05506 0.80434 1.45571 1.46121 1.07571 1.20737 1.22783 0.93203 0.89370 0.94424 1.21203 1.06139 1.00691 0.96721 1.21891 0.90154 0.90961 0.98299 1.22097 1.09299 1.01684 0.97280 1.17756 0.82173 0.82769 0.87754 1.90959 1.59853 1.31800 1.67716 1.22012 0.92738 0.94699 0.85737 0.87239 1.23002 0.96684 0.97584 1.00063 1.20781 0.94171 0.82913 0.95186 1.44648 1.39814 1.02635 1.47870 1.19468 1.11658 0.89558 1.16572 0.90527 1.25693 1.01104 0.97654 1.01540 1.70208 1.37679 1.10733 1.41385 0.84959 0.77915 0.78162 0.77973 1.19254 1.21145 1.21930 1.21960 0.89776 0.95852 0.92821 0.91821 0.92502 0.91571 0.91081 0.92400 0.89444 0.88638 0.88465 0.84659 0.86511 0.91446 0.78440 0.79849 0.81436 0.84005 0.89797 0.91412 0.96378 0.98614 0.94296 0.95952 0.94761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.14 -1.80 6.26 30.60 0.19 -1.60 16 3 C 0.10 1.71 5.20 86.38 0.45 2.16 16 4 N -0.60 -16.07 2.56 -790.14 -2.02 -18.10 16 5 C 0.51 14.93 6.95 87.65 0.61 15.54 16 6 O -0.57 -22.66 12.02 -3.04 -0.04 -22.69 16 7 C -0.13 -2.64 4.58 29.84 0.14 -2.51 16 8 C 0.11 2.38 4.62 86.38 0.40 2.78 16 9 N -0.49 -8.96 2.58 -650.96 -1.68 -10.64 16 10 C 0.13 1.07 10.28 83.42 0.86 1.93 16 11 C -0.23 -1.20 10.01 22.08 0.22 -0.98 16 12 C 0.01 0.07 10.10 22.32 0.23 0.30 16 13 C -0.28 -5.04 9.99 22.40 0.22 -4.81 16 14 C 0.49 12.43 7.41 84.82 0.63 13.06 16 15 O -0.62 -22.43 16.64 -5.52 -0.09 -22.53 16 16 C 0.15 5.45 3.55 46.38 0.16 5.62 16 17 H 0.11 3.53 7.88 -2.39 -0.02 3.51 16 18 C -0.13 -5.40 6.31 31.78 0.20 -5.20 16 19 C 0.19 10.50 5.37 86.73 0.47 10.97 16 20 N -0.62 -35.38 3.40 -691.88 -2.35 -37.73 16 21 C -0.24 -14.85 10.28 84.03 0.86 -13.99 16 22 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 23 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 24 N -0.95 -60.32 10.31 21.65 0.22 -60.09 16 25 Si 0.98 48.51 29.55 68.60 2.03 50.54 16 26 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 27 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 29 C 0.12 5.72 6.61 86.85 0.57 6.30 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.82 7.22 -2.39 -0.02 0.80 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 1.42 7.95 -2.39 -0.02 1.40 16 36 H 0.10 1.28 6.44 -2.39 -0.02 1.27 16 37 H 0.10 2.02 7.40 -2.39 -0.02 2.01 16 38 H 0.14 1.53 7.18 -2.38 -0.02 1.51 16 39 H 0.12 2.15 7.97 -2.39 -0.02 2.13 16 40 H 0.07 2.11 7.34 -2.38 -0.02 2.09 16 41 H 0.20 0.17 8.04 -2.91 -0.02 0.14 16 42 H 0.18 -0.36 8.06 -2.91 -0.02 -0.39 16 43 H 0.17 0.28 8.06 -2.91 -0.02 0.25 16 44 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 45 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 46 H 0.07 2.87 5.98 -2.39 -0.01 2.85 16 47 H 0.02 1.05 7.38 -2.39 -0.02 1.03 16 48 H 0.00 -0.27 7.50 -2.38 -0.02 -0.29 16 49 H 0.25 15.10 8.31 -92.70 -0.77 14.33 16 50 H 0.02 1.17 5.81 -2.39 -0.01 1.16 16 51 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -91.26 404.55 4.37 -86.90 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.91 Total: 9.04 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 7.39 Total: 25.30 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -5.83 Total: -126.56 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -0.13 Total: -45.22 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -91.26 4.37 -86.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493956911.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.345 kcal (2) G-P(sol) polarization free energy of solvation -91.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds