Wall clock time and date at job start Wed Apr 1 2020 05:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47257 * 2 1 4 4 N 1.46496 * 109.47208 * 180.02562 * 3 2 1 5 5 C 1.34778 * 120.00173 * 90.00194 * 4 3 2 6 6 O 1.21280 * 120.00401 * 174.97649 * 5 4 3 7 7 C 1.50701 * 119.99619 * 354.97713 * 5 4 3 8 8 C 1.53000 * 109.46964 * 180.02562 * 7 5 4 9 9 N 1.46504 * 109.47316 * 180.02562 * 8 7 5 10 10 C 1.35766 * 119.62141 * 269.73015 * 9 8 7 11 11 C 1.35351 * 120.69771 * 179.71957 * 10 9 8 12 12 C 1.40196 * 119.94777 * 0.52424 * 11 10 9 13 13 C 1.36399 * 119.26778 * 359.75059 * 12 11 10 14 14 C 1.34661 * 119.62519 * 89.99429 * 9 8 7 15 15 O 1.22061 * 119.98302 * 0.02562 * 14 9 8 16 16 C 1.46504 * 120.00348 * 270.00142 * 4 3 2 17 17 H 1.08997 * 110.64363 * 178.13169 * 16 4 3 18 18 C 1.55154 * 110.71856 * 54.78746 * 16 4 3 19 19 C 1.54906 * 101.58725 * 277.14529 * 18 16 4 20 20 N 1.47432 * 104.82692 * 322.98817 * 19 18 16 21 21 C 1.36939 * 125.64756 * 204.16150 * 20 19 18 22 22 H 1.08002 * 120.00096 * 179.97438 * 21 20 19 23 23 C 1.38817 * 119.99879 * 359.96504 * 21 20 19 24 24 N 1.31618 * 119.99870 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99741 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47166 * 59.99791 * 25 23 21 27 27 H 1.48502 * 109.46928 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47277 * 299.99459 * 25 23 21 29 29 C 1.47024 * 108.70398 * 24.13223 * 20 19 18 30 30 H 1.08997 * 109.47053 * 299.99898 * 1 2 3 31 31 H 1.09003 * 109.46979 * 59.99961 * 1 2 3 32 32 H 1.09003 * 109.46917 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47031 * 240.00082 * 2 1 3 34 34 H 1.09000 * 109.47203 * 120.00510 * 2 1 3 35 35 H 1.09000 * 109.47431 * 300.00370 * 3 2 1 36 36 H 1.08997 * 109.47005 * 60.00073 * 3 2 1 37 37 H 1.08997 * 109.47099 * 299.99768 * 7 5 4 38 38 H 1.08998 * 109.47048 * 59.99998 * 7 5 4 39 39 H 1.09006 * 109.47043 * 299.99932 * 8 7 5 40 40 H 1.08998 * 109.47377 * 60.00031 * 8 7 5 41 41 H 1.07996 * 119.64723 * 359.97438 * 10 9 8 42 42 H 1.08002 * 120.02464 * 180.27640 * 11 10 9 43 43 H 1.07998 * 120.36548 * 179.77443 * 12 11 10 44 44 H 1.07997 * 120.35209 * 180.02562 * 13 12 11 45 45 H 1.09006 * 111.00070 * 35.21890 * 18 16 4 46 46 H 1.09002 * 111.00207 * 159.06227 * 18 16 4 47 47 H 1.09002 * 110.36613 * 204.15507 * 19 18 16 48 48 H 1.08995 * 110.36968 * 81.82656 * 19 18 16 49 49 H 0.97009 * 119.99706 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.87776 * 239.52322 * 29 20 19 51 51 H 1.08996 * 110.00911 * 118.42703 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1784 1.4426 -1.1681 6 8 5.3877 1.5346 -1.1706 7 6 3.4286 1.3286 -2.4704 8 6 4.4215 1.3526 -3.6342 9 7 3.6927 1.2424 -4.9003 10 6 3.4523 0.0164 -5.4317 11 6 2.7761 -0.1110 -6.5973 12 6 2.3259 1.0315 -7.2737 13 6 2.5732 2.2626 -6.7411 14 6 3.2735 2.3585 -5.5264 15 8 3.5019 3.4539 -5.0388 16 6 4.2381 1.4422 1.2678 17 1 5.3130 1.4090 1.0903 18 6 3.7883 0.2564 2.1616 19 6 2.5114 0.8322 2.8230 20 7 2.8181 2.2545 3.0606 21 6 2.2283 3.0511 4.0055 22 1 2.5244 4.0853 4.1011 23 6 1.2497 2.5293 4.8404 24 7 0.8884 1.2691 4.7234 25 14 0.4456 3.6157 6.1298 26 1 -0.2245 4.7614 5.4638 27 1 -0.5597 2.8260 6.8854 28 1 1.4814 4.1235 7.0649 29 6 3.8626 2.6759 2.1156 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 2.8714 0.3920 -2.4880 38 1 2.7364 2.1652 -2.5655 39 1 4.9792 2.2891 -3.6168 40 1 5.1135 0.5159 -3.5389 41 1 3.8007 -0.8667 -4.9168 42 1 2.5870 -1.0919 -7.0079 43 1 1.7890 0.9378 -8.2061 44 1 2.2340 3.1543 -7.2472 45 1 3.5542 -0.6207 1.5582 46 1 4.5450 0.0228 2.9105 47 1 2.3110 0.3245 3.7665 48 1 1.6591 0.7351 2.1505 49 1 0.2042 0.9045 5.3066 50 1 4.7365 3.0296 2.6626 51 1 3.4838 3.4681 1.4699 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493956912.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:30 Heat of formation + Delta-G solvation = 1.354376 kcal Electronic energy + Delta-G solvation = -31784.648375 eV Core-core repulsion = 27685.860325 eV Total energy + Delta-G solvation = -4098.788050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.60656 -40.15960 -37.75334 -37.10302 -35.31340 -35.11314 -32.98208 -32.00803 -31.16297 -30.06426 -29.23599 -27.58214 -26.00279 -25.44724 -24.32911 -23.90951 -22.53873 -21.50693 -20.50351 -20.17531 -18.64061 -18.04978 -17.56385 -17.07409 -16.99273 -16.49294 -16.12992 -15.55199 -15.52483 -14.77333 -14.71501 -14.62012 -14.39185 -13.80420 -13.78609 -13.72376 -13.26733 -12.80323 -12.77672 -12.64636 -12.43368 -12.25195 -12.06421 -11.94721 -11.78125 -11.65176 -11.47853 -11.46172 -11.31064 -11.04300 -10.87770 -10.74658 -10.47007 -10.28530 -10.24081 -10.16109 -10.13345 -9.88542 -9.59153 -9.48044 -8.66871 -8.32670 -8.25152 -6.86984 -5.69540 -3.10854 0.54145 1.60524 2.32336 2.71658 3.20488 3.38251 3.42447 3.42976 3.43835 4.24232 4.36639 4.46138 4.53523 4.61112 4.64996 4.83275 4.93874 5.02290 5.04847 5.17401 5.27049 5.40785 5.42655 5.44235 5.50305 5.56033 5.63343 5.68056 5.69320 5.73308 5.80195 5.85507 5.93117 5.97272 6.06999 6.21280 6.23082 6.28026 6.35137 6.37985 6.47507 6.59915 6.63544 6.71819 6.83093 7.00590 7.45592 7.59024 7.67032 7.80803 7.82083 8.29676 8.32294 9.18199 9.78477 10.42805 11.33805 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017574 B = 0.002531 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.903615 B =11058.327556 C =11281.123711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.097 3.903 4 N -0.587 5.587 5 C 0.520 3.480 6 O -0.552 6.552 7 C -0.154 4.154 8 C 0.106 3.894 9 N -0.495 5.495 10 C 0.137 3.863 11 C -0.238 4.238 12 C -0.018 4.018 13 C -0.245 4.245 14 C 0.510 3.490 15 O -0.547 6.547 16 C 0.126 3.874 17 H 0.099 0.901 18 C -0.158 4.158 19 C 0.138 3.862 20 N -0.602 5.602 21 C -0.222 4.222 22 H 0.076 0.924 23 C -0.009 4.009 24 N -0.922 5.922 25 Si 0.913 3.087 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.126 3.874 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.162 0.838 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.147 0.853 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.104 0.896 48 H 0.033 0.967 49 H 0.252 0.748 50 H 0.032 0.968 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.530 -8.405 -21.664 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C -0.026 4.026 4 N -0.317 5.317 5 C 0.308 3.692 6 O -0.431 6.431 7 C -0.195 4.195 8 C -0.016 4.016 9 N -0.205 5.205 10 C 0.009 3.991 11 C -0.261 4.261 12 C -0.039 4.039 13 C -0.267 4.267 14 C 0.311 3.689 15 O -0.429 6.429 16 C 0.023 3.977 17 H 0.117 0.883 18 C -0.197 4.197 19 C 0.014 3.986 20 N -0.329 5.329 21 C -0.350 4.350 22 H 0.094 0.906 23 C -0.204 4.204 24 N -0.570 5.570 25 Si 0.744 3.256 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.212 1.212 29 C -0.001 4.001 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.118 0.882 41 H 0.179 0.821 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.164 0.836 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.122 0.878 48 H 0.051 0.949 49 H 0.063 0.937 50 H 0.050 0.950 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.173 -7.619 -21.116 22.554 hybrid contribution -0.670 0.446 0.586 0.995 sum 1.504 -7.173 -20.531 21.800 Atomic orbital electron populations 1.21681 0.95144 1.01608 1.02203 1.22163 0.96462 0.97143 1.02533 1.21970 0.78700 0.97475 1.04458 1.47905 1.07138 1.71263 1.05410 1.20181 0.87645 0.76340 0.85081 1.90677 1.14101 1.50843 1.87437 1.21994 0.99720 1.05217 0.92556 1.21755 0.93648 1.06657 0.79493 1.45654 1.46669 1.06829 1.21371 1.22034 0.94299 0.88322 0.94432 1.20653 1.07705 1.00097 0.97642 1.21439 0.92518 0.92026 0.97944 1.22151 1.07213 0.99565 0.97756 1.17228 0.81599 0.83558 0.86480 1.91001 1.58747 1.25124 1.68016 1.22149 0.96344 0.97122 0.82120 0.88271 1.23443 1.01716 0.96303 0.98285 1.22297 0.90777 0.84633 1.00887 1.44521 1.42711 1.08038 1.37600 1.19025 1.14832 0.92811 1.08358 0.90630 1.24746 0.99355 0.96517 0.99825 1.69780 1.33942 1.12185 1.41109 0.86174 0.78869 0.79238 0.81343 1.21266 1.21610 1.21212 1.21636 0.92813 0.94161 0.91458 0.91437 0.93385 0.92809 0.93139 0.89633 0.91621 0.86982 0.88431 0.88095 0.87219 0.88182 0.82087 0.83811 0.84906 0.83554 0.91796 0.91131 0.87819 0.94907 0.93735 0.94991 0.95543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.89 37.16 0.37 -1.53 16 2 C -0.14 -1.94 5.09 -26.73 -0.14 -2.07 16 3 C 0.10 1.47 4.25 -4.05 -0.02 1.45 16 4 N -0.59 -9.40 2.45 -164.03 -0.40 -9.80 16 5 C 0.52 7.90 7.66 -10.98 -0.08 7.81 16 6 O -0.55 -9.84 15.37 5.56 0.09 -9.76 16 7 C -0.15 -1.78 4.69 -27.88 -0.13 -1.91 16 8 C 0.11 1.15 4.62 -4.04 -0.02 1.13 16 9 N -0.49 -4.87 2.58 -119.77 -0.31 -5.18 16 10 C 0.14 0.87 10.28 -16.84 -0.17 0.70 16 11 C -0.24 -1.31 10.01 -39.88 -0.40 -1.71 16 12 C -0.02 -0.11 10.10 -39.51 -0.40 -0.51 16 13 C -0.25 -2.34 9.99 -39.38 -0.39 -2.73 16 14 C 0.51 6.41 7.41 -15.45 -0.11 6.29 16 15 O -0.55 -9.24 16.64 4.86 0.08 -9.16 16 16 C 0.13 2.28 3.58 -66.09 -0.24 2.04 16 17 H 0.10 1.81 7.01 -51.93 -0.36 1.44 16 18 C -0.16 -2.88 6.09 -24.59 -0.15 -3.03 16 19 C 0.14 3.07 4.65 -2.53 -0.01 3.06 16 20 N -0.60 -14.62 2.97 -170.07 -0.51 -15.13 16 21 C -0.22 -5.98 10.27 -15.06 -0.15 -6.13 16 22 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 23 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 24 N -0.92 -25.49 10.09 55.49 0.56 -24.93 16 25 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 C 0.13 2.65 6.25 -3.06 -0.02 2.63 16 30 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.57 6.94 -51.93 -0.36 0.21 16 34 H 0.09 1.30 4.34 -51.93 -0.23 1.08 16 35 H 0.07 0.89 6.47 -51.93 -0.34 0.55 16 36 H 0.11 2.14 5.19 -51.93 -0.27 1.87 16 37 H 0.10 0.91 6.94 -51.93 -0.36 0.55 16 38 H 0.10 1.26 7.25 -51.93 -0.38 0.89 16 39 H 0.11 1.49 7.34 -51.93 -0.38 1.10 16 40 H 0.10 0.90 7.97 -51.93 -0.41 0.48 16 41 H 0.16 0.53 8.03 -52.49 -0.42 0.11 16 42 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 45 H 0.06 1.04 6.44 -51.93 -0.33 0.71 16 46 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 47 H 0.10 2.68 5.87 -51.93 -0.31 2.37 16 48 H 0.03 0.72 3.99 -51.93 -0.21 0.52 16 49 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 50 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 LS Contribution 394.14 15.07 5.94 5.94 Total: -1.00 -32.94 394.14 -9.44 -42.38 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.70 Total: 3.90 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -2.17 Total: 5.15 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.66 Total: -55.04 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.17 Total: -18.92 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.94 -9.44 -42.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493956912.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.731 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds