Wall clock time and date at job start Wed Apr 1 2020 05:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47257 * 2 1 4 4 N 1.46496 * 109.47208 * 180.02562 * 3 2 1 5 5 C 1.34778 * 120.00173 * 90.00194 * 4 3 2 6 6 O 1.21280 * 120.00401 * 174.97649 * 5 4 3 7 7 C 1.50701 * 119.99619 * 354.97713 * 5 4 3 8 8 C 1.53000 * 109.46964 * 180.02562 * 7 5 4 9 9 N 1.46504 * 109.47316 * 180.02562 * 8 7 5 10 10 C 1.35766 * 119.62141 * 269.73015 * 9 8 7 11 11 C 1.35351 * 120.69771 * 179.71957 * 10 9 8 12 12 C 1.40196 * 119.94777 * 0.52424 * 11 10 9 13 13 C 1.36399 * 119.26778 * 359.75059 * 12 11 10 14 14 C 1.34661 * 119.62519 * 89.99429 * 9 8 7 15 15 O 1.22061 * 119.98302 * 0.02562 * 14 9 8 16 16 C 1.46504 * 120.00348 * 270.00142 * 4 3 2 17 17 H 1.08997 * 110.64363 * 178.13169 * 16 4 3 18 18 C 1.55154 * 110.71856 * 54.78746 * 16 4 3 19 19 C 1.54906 * 101.58725 * 277.14529 * 18 16 4 20 20 N 1.47432 * 104.82692 * 322.98817 * 19 18 16 21 21 C 1.36939 * 125.64756 * 204.16150 * 20 19 18 22 22 H 1.08002 * 120.00096 * 179.97438 * 21 20 19 23 23 C 1.38817 * 119.99879 * 359.96504 * 21 20 19 24 24 N 1.31618 * 119.99870 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99741 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47166 * 59.99791 * 25 23 21 27 27 H 1.48502 * 109.46928 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47277 * 299.99459 * 25 23 21 29 29 C 1.47024 * 108.70398 * 24.13223 * 20 19 18 30 30 H 1.08997 * 109.47053 * 299.99898 * 1 2 3 31 31 H 1.09003 * 109.46979 * 59.99961 * 1 2 3 32 32 H 1.09003 * 109.46917 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47031 * 240.00082 * 2 1 3 34 34 H 1.09000 * 109.47203 * 120.00510 * 2 1 3 35 35 H 1.09000 * 109.47431 * 300.00370 * 3 2 1 36 36 H 1.08997 * 109.47005 * 60.00073 * 3 2 1 37 37 H 1.08997 * 109.47099 * 299.99768 * 7 5 4 38 38 H 1.08998 * 109.47048 * 59.99998 * 7 5 4 39 39 H 1.09006 * 109.47043 * 299.99932 * 8 7 5 40 40 H 1.08998 * 109.47377 * 60.00031 * 8 7 5 41 41 H 1.07996 * 119.64723 * 359.97438 * 10 9 8 42 42 H 1.08002 * 120.02464 * 180.27640 * 11 10 9 43 43 H 1.07998 * 120.36548 * 179.77443 * 12 11 10 44 44 H 1.07997 * 120.35209 * 180.02562 * 13 12 11 45 45 H 1.09006 * 111.00070 * 35.21890 * 18 16 4 46 46 H 1.09002 * 111.00207 * 159.06227 * 18 16 4 47 47 H 1.09002 * 110.36613 * 204.15507 * 19 18 16 48 48 H 1.08995 * 110.36968 * 81.82656 * 19 18 16 49 49 H 0.97009 * 119.99706 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.87776 * 239.52322 * 29 20 19 51 51 H 1.08996 * 110.00911 * 118.42703 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1784 1.4426 -1.1681 6 8 5.3877 1.5346 -1.1706 7 6 3.4286 1.3286 -2.4704 8 6 4.4215 1.3526 -3.6342 9 7 3.6927 1.2424 -4.9003 10 6 3.4523 0.0164 -5.4317 11 6 2.7761 -0.1110 -6.5973 12 6 2.3259 1.0315 -7.2737 13 6 2.5732 2.2626 -6.7411 14 6 3.2735 2.3585 -5.5264 15 8 3.5019 3.4539 -5.0388 16 6 4.2381 1.4422 1.2678 17 1 5.3130 1.4090 1.0903 18 6 3.7883 0.2564 2.1616 19 6 2.5114 0.8322 2.8230 20 7 2.8181 2.2545 3.0606 21 6 2.2283 3.0511 4.0055 22 1 2.5244 4.0853 4.1011 23 6 1.2497 2.5293 4.8404 24 7 0.8884 1.2691 4.7234 25 14 0.4456 3.6157 6.1298 26 1 -0.2245 4.7614 5.4638 27 1 -0.5597 2.8260 6.8854 28 1 1.4814 4.1235 7.0649 29 6 3.8626 2.6759 2.1156 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 2.8714 0.3920 -2.4880 38 1 2.7364 2.1652 -2.5655 39 1 4.9792 2.2891 -3.6168 40 1 5.1135 0.5159 -3.5389 41 1 3.8007 -0.8667 -4.9168 42 1 2.5870 -1.0919 -7.0079 43 1 1.7890 0.9378 -8.2061 44 1 2.2340 3.1543 -7.2472 45 1 3.5542 -0.6207 1.5582 46 1 4.5450 0.0228 2.9105 47 1 2.3110 0.3245 3.7665 48 1 1.6591 0.7351 2.1505 49 1 0.2042 0.9045 5.3066 50 1 4.7365 3.0296 2.6626 51 1 3.4838 3.4681 1.4699 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493956912.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:29 Heat of formation + Delta-G solvation = -17.934745 kcal Electronic energy + Delta-G solvation = -31785.484814 eV Core-core repulsion = 27685.860325 eV Total energy + Delta-G solvation = -4099.624489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.37205 -41.46478 -39.22959 -37.94976 -36.61075 -36.03579 -34.53442 -33.46674 -32.21748 -31.00940 -30.67912 -29.14604 -27.24189 -26.71102 -25.84033 -24.60771 -23.36453 -22.65609 -21.97405 -21.82564 -19.95517 -19.01439 -18.94649 -18.26070 -18.01019 -17.48777 -16.99648 -16.76484 -16.64637 -16.55200 -15.86971 -15.67776 -15.38850 -15.10542 -15.04814 -14.82975 -14.45777 -14.16638 -13.98962 -13.77954 -13.67810 -13.38610 -13.22671 -13.08854 -13.00047 -12.86297 -12.80344 -12.66604 -12.64652 -12.59563 -12.30012 -12.09620 -12.00635 -11.87636 -11.77236 -11.42792 -11.39272 -11.13564 -10.99046 -10.79857 -10.65199 -9.68828 -8.93830 -8.84756 -7.75550 -5.18640 -0.03412 0.96607 1.46771 1.48232 1.50078 1.53106 1.54708 2.02111 2.49499 2.72470 3.33724 3.40581 3.64182 3.68979 3.73066 3.85106 3.89278 3.96135 3.99616 4.03456 4.15744 4.22078 4.27246 4.32020 4.38910 4.43121 4.50263 4.61104 4.62609 4.67804 4.71919 4.77780 4.81646 4.89213 4.96614 5.00869 5.06721 5.12188 5.20827 5.24603 5.35099 5.42537 5.44947 5.48743 5.60900 5.71436 5.75510 5.86317 6.14357 6.34621 6.40733 7.01372 7.06273 7.14086 7.79018 8.42693 9.24605 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017574 B = 0.002531 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.903615 B =11058.327556 C =11281.123711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.102 3.898 4 N -0.589 5.589 5 C 0.521 3.479 6 O -0.578 6.578 7 C -0.141 4.141 8 C 0.111 3.889 9 N -0.492 5.492 10 C 0.130 3.870 11 C -0.227 4.227 12 C 0.008 3.992 13 C -0.284 4.284 14 C 0.490 3.510 15 O -0.615 6.615 16 C 0.139 3.861 17 H 0.103 0.897 18 C -0.141 4.141 19 C 0.145 3.855 20 N -0.618 5.618 21 C -0.241 4.241 22 H 0.071 0.929 23 C -0.055 4.055 24 N -0.938 5.938 25 Si 0.973 3.027 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.126 3.874 30 H 0.031 0.969 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.133 0.867 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.125 0.875 41 H 0.202 0.798 42 H 0.184 0.816 43 H 0.167 0.833 44 H 0.141 0.859 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.035 0.965 49 H 0.247 0.753 50 H 0.027 0.973 51 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.973 -11.491 -24.244 26.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C -0.021 4.021 4 N -0.319 5.319 5 C 0.310 3.690 6 O -0.459 6.459 7 C -0.181 4.181 8 C -0.011 4.011 9 N -0.201 5.201 10 C 0.004 3.996 11 C -0.249 4.249 12 C -0.014 4.014 13 C -0.306 4.306 14 C 0.296 3.704 15 O -0.503 6.503 16 C 0.035 3.965 17 H 0.121 0.879 18 C -0.180 4.180 19 C 0.021 3.979 20 N -0.345 5.345 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.249 4.249 24 N -0.587 5.587 25 Si 0.802 3.198 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.209 1.209 29 C -0.001 4.001 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.151 0.849 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.143 0.857 41 H 0.219 0.781 42 H 0.201 0.799 43 H 0.184 0.816 44 H 0.159 0.841 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.053 0.947 49 H 0.057 0.943 50 H 0.045 0.955 51 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 1.614 -10.751 -23.736 26.107 hybrid contribution -0.496 1.340 1.295 1.929 sum 1.117 -9.411 -22.440 24.359 Atomic orbital electron populations 1.21635 0.94711 1.02438 1.01370 1.22078 0.96711 0.95513 1.03174 1.21905 0.78078 0.98813 1.03279 1.47916 1.07418 1.71557 1.05016 1.20749 0.87432 0.75127 0.85694 1.90669 1.15525 1.51888 1.87821 1.21927 0.99312 1.06444 0.90385 1.21612 0.93672 1.05874 0.79908 1.45573 1.46085 1.07641 1.20781 1.22811 0.93982 0.87765 0.95048 1.21209 1.05709 1.01310 0.96703 1.21888 0.90177 0.90919 0.98375 1.22096 1.09585 1.01178 0.97703 1.17729 0.81905 0.83407 0.87386 1.90951 1.61990 1.27530 1.69871 1.21864 0.96672 0.95247 0.82750 0.87943 1.23285 0.99468 0.97013 0.98263 1.22115 0.92919 0.83469 0.99421 1.44712 1.43181 1.08869 1.37694 1.19282 1.15323 0.93154 1.09216 0.91158 1.25450 1.00021 0.97798 1.01610 1.70010 1.34011 1.13186 1.41515 0.85245 0.77836 0.77711 0.79040 1.20900 1.21640 1.20851 1.21692 0.91696 0.95480 0.91223 0.94961 0.91512 0.91124 0.89705 0.91540 0.89779 0.91199 0.84888 0.89216 0.90904 0.85653 0.78115 0.79873 0.81581 0.84143 0.89145 0.91141 0.91499 0.94701 0.94271 0.95501 0.96656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.89 71.98 0.71 -2.69 16 2 C -0.14 -3.33 5.09 30.59 0.16 -3.17 16 3 C 0.10 3.01 4.25 86.38 0.37 3.38 16 4 N -0.59 -18.32 2.45 -791.27 -1.94 -20.26 16 5 C 0.52 15.09 7.66 87.66 0.67 15.76 16 6 O -0.58 -20.16 15.37 -3.03 -0.05 -20.21 16 7 C -0.14 -2.93 4.69 29.85 0.14 -2.79 16 8 C 0.11 2.26 4.62 86.38 0.40 2.66 16 9 N -0.49 -8.74 2.58 -650.96 -1.68 -10.43 16 10 C 0.13 1.05 10.28 83.42 0.86 1.91 16 11 C -0.23 -1.28 10.01 22.08 0.22 -1.06 16 12 C 0.01 0.08 10.10 22.32 0.23 0.30 16 13 C -0.28 -5.24 9.99 22.40 0.22 -5.02 16 14 C 0.49 12.49 7.41 84.82 0.63 13.11 16 15 O -0.62 -22.37 16.64 -5.51 -0.09 -22.46 16 16 C 0.14 4.99 3.58 46.18 0.17 5.16 16 17 H 0.10 3.67 7.01 -2.39 -0.02 3.66 16 18 C -0.14 -5.07 6.09 31.98 0.19 -4.87 16 19 C 0.14 6.58 4.65 86.85 0.40 6.98 16 20 N -0.62 -31.04 2.97 -691.97 -2.06 -33.10 16 21 C -0.24 -13.39 10.27 84.03 0.86 -12.53 16 22 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 23 C -0.06 -3.06 5.49 84.86 0.47 -2.60 16 24 N -0.94 -53.29 10.09 21.65 0.22 -53.07 16 25 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 29 C 0.13 5.45 6.25 86.73 0.54 5.99 16 30 H 0.03 0.98 8.12 -2.39 -0.02 0.96 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.51 6.94 -2.38 -0.02 1.49 16 34 H 0.07 1.90 4.34 -2.39 -0.01 1.89 16 35 H 0.08 2.16 6.47 -2.39 -0.02 2.15 16 36 H 0.07 2.73 5.19 -2.39 -0.01 2.71 16 37 H 0.13 1.83 6.94 -2.39 -0.02 1.81 16 38 H 0.09 2.16 7.25 -2.39 -0.02 2.15 16 39 H 0.07 2.05 7.34 -2.38 -0.02 2.04 16 40 H 0.13 1.87 7.97 -2.39 -0.02 1.85 16 41 H 0.20 -0.01 8.03 -2.91 -0.02 -0.03 16 42 H 0.18 -0.30 8.06 -2.91 -0.02 -0.32 16 43 H 0.17 0.42 8.06 -2.91 -0.02 0.40 16 44 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 45 H 0.09 2.77 6.44 -2.38 -0.02 2.76 16 46 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 47 H 0.07 3.57 5.87 -2.39 -0.01 3.56 16 48 H 0.04 1.58 3.99 -2.39 -0.01 1.57 16 49 H 0.25 13.74 8.31 -92.70 -0.77 12.97 16 50 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.02 0.70 8.04 -2.39 -0.02 0.68 16 Total: -1.00 -78.35 394.14 4.60 -73.75 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.94 Total: 17.96 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 7.24 Total: 20.51 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -5.46 Total: -116.85 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -0.14 Total: -42.67 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -78.35 4.60 -73.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493956912.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.816 kcal (2) G-P(sol) polarization free energy of solvation -78.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds