Wall clock time and date at job start Wed Apr 1 2020 04:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21282 * 120.00010 * 2 1 4 4 N 1.34778 * 119.99951 * 179.97438 * 2 1 3 5 5 C 1.39945 * 120.00068 * 185.26111 * 4 2 1 6 6 C 1.38990 * 120.00344 * 213.79529 * 5 4 2 7 7 C 1.38208 * 120.22716 * 180.02562 * 6 5 4 8 8 C 1.38020 * 120.22356 * 359.67208 * 7 6 5 9 9 C 1.39582 * 119.99014 * 0.62803 * 8 7 6 10 10 C 1.47866 * 120.10725 * 179.67282 * 9 8 7 11 11 O 1.21550 * 119.99732 * 161.65003 * 10 9 8 12 12 N 1.34769 * 119.99914 * 341.65396 * 10 9 8 13 13 C 1.46501 * 119.99951 * 219.87401 * 12 10 9 14 14 C 1.53001 * 109.47040 * 270.00419 * 13 12 10 15 15 N 1.46501 * 109.47040 * 179.97438 * 14 13 12 16 16 C 1.46503 * 119.99998 * 269.99645 * 15 14 13 17 17 C 1.36943 * 120.00027 * 90.00028 * 15 14 13 18 18 H 1.07992 * 119.99963 * 24.67321 * 17 15 14 19 19 C 1.38816 * 119.99338 * 204.67446 * 17 15 14 20 20 N 1.31619 * 120.00521 * 6.76052 * 19 17 15 21 21 Si 1.86801 * 119.99399 * 186.76312 * 19 17 15 22 22 H 1.48503 * 109.47283 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47105 * 120.00198 * 21 19 17 24 24 H 1.48507 * 109.46989 * 240.00021 * 21 19 17 25 25 C 1.46499 * 120.00397 * 39.87515 * 12 10 9 26 26 C 1.53002 * 109.47246 * 263.62897 * 25 12 10 27 27 C 1.53000 * 109.47093 * 23.62970 * 25 12 10 28 28 C 1.38600 * 120.00136 * 33.82272 * 5 4 2 29 29 H 1.09003 * 109.47515 * 240.00354 * 1 2 3 30 30 H 1.09006 * 109.47226 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47296 * 120.00102 * 1 2 3 32 32 H 0.96998 * 119.99479 * 5.26355 * 4 2 1 33 33 H 1.08006 * 119.88314 * 0.02562 * 6 5 4 34 34 H 1.07999 * 119.88637 * 179.97438 * 7 6 5 35 35 H 1.07997 * 120.00370 * 180.32149 * 8 7 6 36 36 H 1.08999 * 109.47489 * 150.00497 * 13 12 10 37 37 H 1.09002 * 109.47437 * 30.00119 * 13 12 10 38 38 H 1.09000 * 109.47048 * 299.99667 * 14 13 12 39 39 H 1.08998 * 109.47648 * 59.99850 * 14 13 12 40 40 H 1.08994 * 109.46746 * 95.04064 * 16 15 14 41 41 H 1.09004 * 109.47328 * 215.04189 * 16 15 14 42 42 H 1.09006 * 109.46741 * 335.03915 * 16 15 14 43 43 H 0.96994 * 120.00012 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.47605 * 143.62744 * 25 12 10 45 45 H 1.08995 * 109.46625 * 65.41473 * 26 25 12 46 46 H 1.09003 * 109.47032 * 185.41250 * 26 25 12 47 47 H 1.09003 * 109.47016 * 305.41405 * 26 25 12 48 48 H 1.08996 * 109.47200 * 105.43006 * 27 25 12 49 49 H 1.09004 * 109.47245 * 225.43435 * 27 25 12 50 50 H 1.09006 * 109.47042 * 345.43628 * 27 25 12 51 51 H 1.07996 * 120.10499 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5759 -1.1697 0.1117 6 6 4.3237 -2.1398 -0.5453 7 6 5.7016 -2.1470 -0.4383 8 6 6.3449 -1.1868 0.3162 9 6 5.6026 -0.2120 0.9849 10 6 6.2887 0.8135 1.7997 11 8 5.7078 1.8372 2.1032 12 7 7.5581 0.6133 2.2057 13 6 7.9670 1.0116 3.5549 14 6 8.4736 2.4551 3.5290 15 7 8.8820 2.8536 4.8783 16 6 7.9107 3.4697 5.7857 17 6 10.1717 2.6503 5.2915 18 1 10.9674 2.5834 4.5644 19 6 10.4560 2.5301 6.6449 20 7 9.4755 2.4779 7.5213 21 14 12.2305 2.4425 7.2221 22 1 13.1372 2.5207 6.0487 23 1 12.5089 3.5761 8.1400 24 1 12.4558 1.1602 7.9366 25 6 8.5290 -0.0026 1.2980 26 6 8.6178 -1.5024 1.5874 27 6 8.0815 0.2118 -0.1493 28 6 4.2119 -0.2052 0.8773 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3634 -0.5139 -0.8900 32 1 1.6989 -2.0055 -0.0762 33 1 3.8262 -2.8906 -1.1414 34 1 6.2773 -2.9036 -0.9507 35 1 7.4221 -1.1927 0.3931 36 1 8.7632 0.3533 3.9025 37 1 7.1141 0.9380 4.2298 38 1 9.3265 2.5287 2.8543 39 1 7.6775 3.1134 3.1815 40 1 7.4748 2.7030 6.4261 41 1 8.4118 4.2162 6.4019 42 1 7.1228 3.9483 5.2039 43 1 9.6743 2.3935 8.4669 44 1 9.5071 0.4547 1.4473 45 1 7.6662 -1.9759 1.3460 46 1 9.4078 -1.9436 0.9796 47 1 8.8427 -1.6560 2.6429 48 1 8.7048 0.9764 -0.6128 49 1 8.1805 -0.7222 -0.7024 50 1 7.0403 0.5341 -0.1637 51 1 3.6325 0.5489 1.3891 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507863529.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:45 Heat of formation + Delta-G solvation = 82.159075 kcal Electronic energy + Delta-G solvation = -31535.100688 eV Core-core repulsion = 27439.816593 eV Total energy + Delta-G solvation = -4095.284095 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.49933 -40.28783 -38.10901 -37.05126 -35.73272 -34.80979 -32.84497 -31.34080 -31.01849 -30.80327 -28.73491 -27.95791 -27.21331 -25.74920 -24.34680 -23.38351 -22.73325 -22.05302 -20.73274 -20.40156 -19.06459 -17.79952 -17.24280 -16.97620 -16.64261 -16.08002 -16.02232 -15.62654 -15.20166 -14.71742 -14.47388 -14.37044 -14.06116 -13.82641 -13.71244 -13.54725 -13.49500 -13.08082 -12.99376 -12.76161 -12.55882 -12.44468 -12.17233 -12.05521 -11.96315 -11.66793 -11.54653 -11.32474 -11.17676 -10.83289 -10.75351 -10.49955 -10.46294 -10.18068 -10.00726 -9.90149 -9.86676 -9.81909 -9.43329 -9.02651 -8.53547 -8.22701 -8.17456 -6.62935 -5.65572 -3.13916 0.75502 1.18830 2.26232 2.70207 2.87046 3.27733 3.40286 3.46902 3.48842 3.76213 4.35110 4.52315 4.55613 4.68083 4.74323 4.82810 4.85938 4.87527 4.94088 4.96015 5.25839 5.29414 5.37157 5.41973 5.48533 5.49324 5.54503 5.62011 5.74118 5.77069 5.89964 5.93804 6.03375 6.09134 6.14697 6.18711 6.25102 6.31675 6.37200 6.50078 6.76035 6.80262 6.90262 6.96756 7.04895 7.21798 7.52292 7.78496 7.81724 7.83855 7.90045 8.34286 8.48644 9.31553 9.94658 10.45929 11.38626 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015738 B = 0.002633 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.715834 B =10632.452267 C =11808.487728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.504 3.496 3 O -0.515 6.515 4 N -0.676 5.676 5 C 0.124 3.876 6 C -0.123 4.123 7 C -0.125 4.125 8 C -0.163 4.163 9 C -0.123 4.123 10 C 0.571 3.429 11 O -0.503 6.503 12 N -0.631 5.631 13 C 0.107 3.893 14 C 0.140 3.860 15 N -0.602 5.602 16 C 0.164 3.836 17 C -0.252 4.252 18 H 0.067 0.933 19 C 0.001 3.999 20 N -0.908 5.908 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.136 3.864 26 C -0.214 4.214 27 C -0.190 4.190 28 C -0.064 4.064 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.410 0.590 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.215 0.785 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.040 0.960 39 H 0.047 0.953 40 H 0.028 0.972 41 H 0.043 0.957 42 H -0.002 1.002 43 H 0.251 0.749 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.078 0.922 50 H 0.083 0.917 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.655 -15.181 -19.596 28.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.292 3.708 3 O -0.389 6.389 4 N -0.323 5.323 5 C 0.031 3.969 6 C -0.144 4.144 7 C -0.144 4.144 8 C -0.179 4.179 9 C -0.127 4.127 10 C 0.360 3.640 11 O -0.377 6.377 12 N -0.368 5.368 13 C -0.017 4.017 14 C 0.012 3.988 15 N -0.325 5.325 16 C 0.020 3.980 17 C -0.381 4.381 18 H 0.085 0.915 19 C -0.197 4.197 20 N -0.554 5.554 21 Si 0.734 3.266 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.032 3.968 26 C -0.271 4.271 27 C -0.246 4.246 28 C -0.085 4.085 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.246 0.754 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.230 0.770 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.016 0.984 43 H 0.061 0.939 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.102 0.898 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.610 -13.773 -19.193 27.263 hybrid contribution 0.581 -0.790 0.444 1.076 sum -13.029 -14.563 -18.750 27.081 Atomic orbital electron populations 1.21926 0.90639 1.06132 1.04440 1.21081 0.90989 0.83240 0.75517 1.90835 1.70440 1.31063 1.46534 1.43563 1.05097 1.09875 1.73723 1.17550 0.82829 0.98121 0.98430 1.21031 0.94466 0.99479 0.99394 1.20903 0.93583 0.99277 1.00616 1.24484 1.06261 0.92194 0.94998 1.20223 0.93614 0.97816 1.01045 1.18124 0.81709 0.85175 0.79015 1.90776 1.67332 1.25698 1.53872 1.47809 1.08446 1.64417 1.16082 1.22485 1.00080 0.99695 0.79394 1.21207 0.97229 0.92470 0.87926 1.43951 1.08652 1.68948 1.10926 1.20818 0.89797 0.96071 0.91338 1.19264 0.83998 1.43752 0.91132 0.91494 1.25122 0.97263 1.00673 0.96664 1.70076 1.29379 1.54843 1.01052 0.86185 0.84653 0.77225 0.78498 1.20365 1.21698 1.21756 1.21118 0.93694 0.93206 0.88755 1.23172 1.03625 0.96258 1.04035 1.23192 1.03765 1.02210 0.95478 1.21247 0.93694 0.97828 0.95738 0.88980 0.88466 0.89208 0.75405 0.85754 0.85256 0.76967 0.90389 0.91680 0.94143 0.93432 0.95338 0.93848 0.98368 0.93859 0.88731 0.88863 0.91209 0.91010 0.92021 0.90339 0.89842 0.83939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.32 36.01 0.37 -0.51 16 2 C 0.50 5.10 7.67 -10.98 -0.08 5.02 16 3 O -0.51 -8.10 14.80 5.56 0.08 -8.02 16 4 N -0.68 -5.63 5.34 -9.89 -0.05 -5.68 16 5 C 0.12 1.40 6.27 -83.74 -0.52 0.88 16 6 C -0.12 -1.09 9.95 -39.31 -0.39 -1.48 16 7 C -0.13 -1.11 10.02 -39.67 -0.40 -1.51 16 8 C -0.16 -1.81 4.48 -39.16 -0.18 -1.98 16 9 C -0.12 -1.82 4.93 -104.99 -0.52 -2.34 16 10 C 0.57 10.31 5.83 -12.32 -0.07 10.24 16 11 O -0.50 -11.13 16.33 5.32 0.09 -11.04 16 12 N -0.63 -10.50 2.44 -167.21 -0.41 -10.91 16 13 C 0.11 2.16 5.73 -4.04 -0.02 2.13 16 14 C 0.14 3.17 5.98 -4.04 -0.02 3.15 16 15 N -0.60 -16.02 2.92 -181.11 -0.53 -16.55 16 16 C 0.16 4.40 9.00 59.85 0.54 4.94 16 17 C -0.25 -7.05 9.67 -15.05 -0.15 -7.19 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C 0.00 0.02 5.22 -17.43 -0.09 -0.07 16 20 N -0.91 -26.99 10.49 55.49 0.58 -26.41 16 21 Si 0.90 22.06 29.56 -169.99 -5.02 17.03 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 C 0.14 1.71 3.12 -67.93 -0.21 1.50 16 26 C -0.21 -2.17 8.73 37.16 0.32 -1.85 16 27 C -0.19 -2.05 7.84 37.16 0.29 -1.76 16 28 C -0.06 -0.96 8.19 -38.98 -0.32 -1.28 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.10 0.57 8.12 -51.93 -0.42 0.15 16 31 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.41 1.68 8.82 -40.82 -0.36 1.32 16 33 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.22 2.09 0.56 -106.63 -0.06 2.03 16 36 H 0.08 1.58 7.97 -51.93 -0.41 1.16 16 37 H 0.06 1.44 8.03 -51.93 -0.42 1.02 16 38 H 0.04 0.88 8.04 -51.93 -0.42 0.46 16 39 H 0.05 1.12 7.30 -51.93 -0.38 0.75 16 40 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 41 H 0.04 1.22 7.28 -51.93 -0.38 0.84 16 42 H 0.00 -0.06 7.84 -51.93 -0.41 -0.46 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.09 1.20 8.12 -51.93 -0.42 0.78 16 45 H 0.09 0.90 4.36 -51.93 -0.23 0.68 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.08 0.61 6.33 -51.93 -0.33 0.29 16 50 H 0.08 1.10 3.80 -51.93 -0.20 0.90 16 51 H 0.14 2.53 6.15 -52.49 -0.32 2.20 16 LS Contribution 399.06 15.07 6.01 6.01 Total: -1.00 -37.09 399.06 -8.33 -45.42 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.63 Total: 2.26 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -1.45 Total: 7.89 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.41 Total: -59.56 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.17 Total: -19.06 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.09 -8.33 -45.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507863529.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.577 kcal (2) G-P(sol) polarization free energy of solvation -37.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds