Wall clock time and date at job start Wed Apr 1 2020 04:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21282 * 120.00010 * 2 1 4 4 N 1.34778 * 119.99951 * 179.97438 * 2 1 3 5 5 C 1.39945 * 120.00068 * 185.26111 * 4 2 1 6 6 C 1.38990 * 120.00344 * 213.79529 * 5 4 2 7 7 C 1.38208 * 120.22716 * 180.02562 * 6 5 4 8 8 C 1.38020 * 120.22356 * 359.67208 * 7 6 5 9 9 C 1.39582 * 119.99014 * 0.62803 * 8 7 6 10 10 C 1.47866 * 120.10725 * 179.67282 * 9 8 7 11 11 O 1.21550 * 119.99732 * 161.65003 * 10 9 8 12 12 N 1.34769 * 119.99914 * 341.65396 * 10 9 8 13 13 C 1.46501 * 119.99951 * 219.87401 * 12 10 9 14 14 C 1.53001 * 109.47040 * 270.00419 * 13 12 10 15 15 N 1.46501 * 109.47040 * 179.97438 * 14 13 12 16 16 C 1.46503 * 119.99998 * 269.99645 * 15 14 13 17 17 C 1.36943 * 120.00027 * 90.00028 * 15 14 13 18 18 H 1.07992 * 119.99963 * 24.67321 * 17 15 14 19 19 C 1.38816 * 119.99338 * 204.67446 * 17 15 14 20 20 N 1.31619 * 120.00521 * 6.76052 * 19 17 15 21 21 Si 1.86801 * 119.99399 * 186.76312 * 19 17 15 22 22 H 1.48503 * 109.47283 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47105 * 120.00198 * 21 19 17 24 24 H 1.48507 * 109.46989 * 240.00021 * 21 19 17 25 25 C 1.46499 * 120.00397 * 39.87515 * 12 10 9 26 26 C 1.53002 * 109.47246 * 263.62897 * 25 12 10 27 27 C 1.53000 * 109.47093 * 23.62970 * 25 12 10 28 28 C 1.38600 * 120.00136 * 33.82272 * 5 4 2 29 29 H 1.09003 * 109.47515 * 240.00354 * 1 2 3 30 30 H 1.09006 * 109.47226 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47296 * 120.00102 * 1 2 3 32 32 H 0.96998 * 119.99479 * 5.26355 * 4 2 1 33 33 H 1.08006 * 119.88314 * 0.02562 * 6 5 4 34 34 H 1.07999 * 119.88637 * 179.97438 * 7 6 5 35 35 H 1.07997 * 120.00370 * 180.32149 * 8 7 6 36 36 H 1.08999 * 109.47489 * 150.00497 * 13 12 10 37 37 H 1.09002 * 109.47437 * 30.00119 * 13 12 10 38 38 H 1.09000 * 109.47048 * 299.99667 * 14 13 12 39 39 H 1.08998 * 109.47648 * 59.99850 * 14 13 12 40 40 H 1.08994 * 109.46746 * 95.04064 * 16 15 14 41 41 H 1.09004 * 109.47328 * 215.04189 * 16 15 14 42 42 H 1.09006 * 109.46741 * 335.03915 * 16 15 14 43 43 H 0.96994 * 120.00012 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.47605 * 143.62744 * 25 12 10 45 45 H 1.08995 * 109.46625 * 65.41473 * 26 25 12 46 46 H 1.09003 * 109.47032 * 185.41250 * 26 25 12 47 47 H 1.09003 * 109.47016 * 305.41405 * 26 25 12 48 48 H 1.08996 * 109.47200 * 105.43006 * 27 25 12 49 49 H 1.09004 * 109.47245 * 225.43435 * 27 25 12 50 50 H 1.09006 * 109.47042 * 345.43628 * 27 25 12 51 51 H 1.07996 * 120.10499 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5759 -1.1697 0.1117 6 6 4.3237 -2.1398 -0.5453 7 6 5.7016 -2.1470 -0.4383 8 6 6.3449 -1.1868 0.3162 9 6 5.6026 -0.2120 0.9849 10 6 6.2887 0.8135 1.7997 11 8 5.7078 1.8372 2.1032 12 7 7.5581 0.6133 2.2057 13 6 7.9670 1.0116 3.5549 14 6 8.4736 2.4551 3.5290 15 7 8.8820 2.8536 4.8783 16 6 7.9107 3.4697 5.7857 17 6 10.1717 2.6503 5.2915 18 1 10.9674 2.5834 4.5644 19 6 10.4560 2.5301 6.6449 20 7 9.4755 2.4779 7.5213 21 14 12.2305 2.4425 7.2221 22 1 13.1372 2.5207 6.0487 23 1 12.5089 3.5761 8.1400 24 1 12.4558 1.1602 7.9366 25 6 8.5290 -0.0026 1.2980 26 6 8.6178 -1.5024 1.5874 27 6 8.0815 0.2118 -0.1493 28 6 4.2119 -0.2052 0.8773 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3634 -0.5139 -0.8900 32 1 1.6989 -2.0055 -0.0762 33 1 3.8262 -2.8906 -1.1414 34 1 6.2773 -2.9036 -0.9507 35 1 7.4221 -1.1927 0.3931 36 1 8.7632 0.3533 3.9025 37 1 7.1141 0.9380 4.2298 38 1 9.3265 2.5287 2.8543 39 1 7.6775 3.1134 3.1815 40 1 7.4748 2.7030 6.4261 41 1 8.4118 4.2162 6.4019 42 1 7.1228 3.9483 5.2039 43 1 9.6743 2.3935 8.4669 44 1 9.5071 0.4547 1.4473 45 1 7.6662 -1.9759 1.3460 46 1 9.4078 -1.9436 0.9796 47 1 8.8427 -1.6560 2.6429 48 1 8.7048 0.9764 -0.6128 49 1 8.1805 -0.7222 -0.7024 50 1 7.0403 0.5341 -0.1637 51 1 3.6325 0.5489 1.3891 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507863529.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:43 Heat of formation + Delta-G solvation = 56.405570 kcal Electronic energy + Delta-G solvation = -31536.217444 eV Core-core repulsion = 27439.816593 eV Total energy + Delta-G solvation = -4096.400851 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.56697 -41.19969 -39.21826 -38.31631 -37.60971 -35.86208 -34.31901 -32.94950 -32.21846 -31.60520 -29.71662 -29.36909 -28.17684 -27.94240 -25.74813 -24.55998 -23.98846 -23.07717 -22.37794 -21.53834 -20.11285 -18.86605 -18.81263 -18.02388 -17.89733 -17.32012 -17.17167 -16.90556 -16.50468 -16.30311 -15.57296 -15.51504 -15.35519 -15.15003 -14.93106 -14.79833 -14.54936 -14.43291 -14.25991 -14.01172 -13.66521 -13.45084 -13.22375 -13.11096 -13.07305 -12.91079 -12.88996 -12.78156 -12.59453 -12.51216 -12.50189 -12.20626 -12.06716 -11.94694 -11.71991 -11.37254 -11.01875 -10.95609 -10.70746 -10.67878 -9.98669 -9.65066 -9.04893 -8.76138 -7.83542 -5.36529 -0.20602 0.30148 1.41628 1.46856 1.48005 1.59207 1.68868 1.92044 2.13311 2.50986 2.82450 3.31254 3.41033 3.71800 3.77740 3.80662 3.92385 3.96465 4.01663 4.09788 4.21338 4.34076 4.43902 4.49238 4.51258 4.55892 4.62318 4.63035 4.63928 4.71717 4.76902 4.82329 4.88071 4.95547 5.00489 5.05990 5.12904 5.18613 5.25072 5.25879 5.32960 5.39841 5.41528 5.44868 5.57791 5.63132 5.72066 5.96819 6.30739 6.41210 6.45679 6.96170 7.11251 7.13809 7.79740 8.29581 9.20921 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015738 B = 0.002633 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.715834 B =10632.452267 C =11808.487728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.494 3.506 3 O -0.583 6.583 4 N -0.660 5.660 5 C 0.115 3.885 6 C -0.103 4.103 7 C -0.113 4.113 8 C -0.156 4.156 9 C -0.148 4.148 10 C 0.567 3.433 11 O -0.566 6.566 12 N -0.629 5.629 13 C 0.128 3.872 14 C 0.147 3.853 15 N -0.618 5.618 16 C 0.182 3.818 17 C -0.263 4.263 18 H 0.076 0.924 19 C -0.054 4.054 20 N -0.942 5.942 21 Si 0.977 3.023 22 H -0.262 1.262 23 H -0.294 1.294 24 H -0.288 1.288 25 C 0.125 3.875 26 C -0.207 4.207 27 C -0.187 4.187 28 C -0.097 4.097 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.433 0.567 33 H 0.171 0.829 34 H 0.180 0.820 35 H 0.229 0.771 36 H 0.081 0.919 37 H 0.033 0.967 38 H 0.053 0.947 39 H 0.029 0.971 40 H 0.006 0.994 41 H 0.023 0.977 42 H 0.009 0.991 43 H 0.249 0.751 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.109 0.891 47 H 0.053 0.947 48 H 0.065 0.935 49 H 0.122 0.878 50 H 0.058 0.942 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.619 -19.589 -22.896 32.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.285 3.715 3 O -0.462 6.462 4 N -0.308 5.308 5 C 0.020 3.980 6 C -0.123 4.123 7 C -0.131 4.131 8 C -0.172 4.172 9 C -0.152 4.152 10 C 0.358 3.642 11 O -0.445 6.445 12 N -0.365 5.365 13 C 0.003 3.997 14 C 0.019 3.981 15 N -0.341 5.341 16 C 0.036 3.964 17 C -0.393 4.393 18 H 0.094 0.906 19 C -0.249 4.249 20 N -0.588 5.588 21 Si 0.805 3.195 22 H -0.186 1.186 23 H -0.221 1.221 24 H -0.215 1.215 25 C 0.023 3.977 26 C -0.264 4.264 27 C -0.243 4.243 28 C -0.118 4.118 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.143 0.857 32 H 0.274 0.726 33 H 0.189 0.811 34 H 0.197 0.803 35 H 0.244 0.756 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.024 0.976 41 H 0.042 0.958 42 H 0.028 0.972 43 H 0.058 0.942 44 H 0.112 0.888 45 H 0.120 0.880 46 H 0.127 0.873 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.140 0.860 50 H 0.077 0.923 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.580 -18.271 -22.556 31.636 hybrid contribution 0.193 0.556 1.371 1.493 sum -12.386 -17.715 -21.185 30.266 Atomic orbital electron populations 1.21950 0.86509 1.06362 1.07164 1.22077 0.92978 0.82614 0.73835 1.90822 1.72086 1.33567 1.49751 1.43488 1.04215 1.10599 1.72472 1.17734 0.84322 0.97844 0.98066 1.21567 0.94660 0.98489 0.97583 1.21495 0.93938 0.98736 0.98882 1.24647 1.06744 0.91396 0.94403 1.19957 0.93597 0.98633 1.02975 1.18841 0.81723 0.85152 0.78467 1.90732 1.68557 1.28403 1.56791 1.47806 1.09108 1.64353 1.15193 1.21872 0.98564 0.98014 0.81225 1.21196 0.97008 0.93610 0.86260 1.44146 1.08577 1.69605 1.11819 1.20519 0.89875 0.94862 0.91111 1.19601 0.84604 1.43423 0.91637 0.90611 1.25977 1.01630 1.00556 0.96718 1.70264 1.31602 1.55881 1.01086 0.85053 0.79592 0.76761 0.78109 1.18610 1.22066 1.21505 1.21517 0.92354 0.94897 0.88981 1.23125 1.05487 0.94060 1.03720 1.23194 1.02116 1.04568 0.94462 1.21067 0.93944 0.98884 0.97932 0.86658 0.89600 0.85665 0.72626 0.81135 0.80311 0.75615 0.90075 0.94843 0.92895 0.95235 0.97593 0.95796 0.97219 0.94216 0.88849 0.87952 0.87291 0.92804 0.91621 0.86005 0.92315 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 10.32 71.24 0.74 -0.70 16 2 C 0.49 10.24 7.67 87.66 0.67 10.91 16 3 O -0.58 -20.18 14.80 -3.04 -0.04 -20.23 16 4 N -0.66 -10.09 5.34 -303.61 -1.62 -11.71 16 5 C 0.11 2.46 6.27 38.11 0.24 2.70 16 6 C -0.10 -1.34 9.95 22.44 0.22 -1.12 16 7 C -0.11 -1.39 10.02 22.21 0.22 -1.17 16 8 C -0.16 -3.05 4.48 22.54 0.10 -2.95 16 9 C -0.15 -4.55 4.93 -20.10 -0.10 -4.65 16 10 C 0.57 22.18 5.83 86.79 0.51 22.68 16 11 O -0.57 -28.11 16.33 -3.87 -0.06 -28.18 16 12 N -0.63 -21.90 2.44 -801.20 -1.95 -23.85 16 13 C 0.13 5.48 5.73 86.38 0.50 5.97 16 14 C 0.15 6.98 5.98 86.38 0.52 7.50 16 15 N -0.62 -34.27 2.92 -726.92 -2.13 -36.39 16 16 C 0.18 10.31 9.00 127.77 1.15 11.46 16 17 C -0.26 -14.95 9.67 84.03 0.81 -14.14 16 18 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 19 C -0.05 -3.11 5.22 84.86 0.44 -2.67 16 20 N -0.94 -57.72 10.49 21.65 0.23 -57.49 16 21 Si 0.98 45.63 29.56 68.60 2.03 47.65 16 22 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 24 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 25 C 0.12 2.97 3.12 44.99 0.14 3.11 16 26 C -0.21 -3.56 8.73 71.98 0.63 -2.93 16 27 C -0.19 -3.63 7.84 71.98 0.56 -3.06 16 28 C -0.10 -3.12 8.19 22.66 0.19 -2.93 16 29 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 1.01 8.12 -2.38 -0.02 0.99 16 31 H 0.13 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.43 2.16 8.82 -92.71 -0.82 1.35 16 33 H 0.17 0.72 8.06 -2.91 -0.02 0.69 16 34 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 35 H 0.23 3.64 0.56 -53.77 -0.03 3.61 16 36 H 0.08 3.40 7.97 -2.39 -0.02 3.38 16 37 H 0.03 1.61 8.03 -2.39 -0.02 1.59 16 38 H 0.05 2.36 8.04 -2.39 -0.02 2.34 16 39 H 0.03 1.50 7.30 -2.39 -0.02 1.48 16 40 H 0.01 0.35 7.34 -2.39 -0.02 0.33 16 41 H 0.02 1.40 7.28 -2.38 -0.02 1.39 16 42 H 0.01 0.50 7.84 -2.38 -0.02 0.48 16 43 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 44 H 0.09 2.25 8.12 -2.39 -0.02 2.23 16 45 H 0.10 1.60 4.36 -2.39 -0.01 1.59 16 46 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.05 1.16 8.04 -2.39 -0.02 1.14 16 48 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.12 1.29 6.33 -2.38 -0.02 1.27 16 50 H 0.06 1.52 3.80 -2.38 -0.01 1.51 16 51 H 0.10 3.95 6.15 -2.91 -0.02 3.94 16 Total: -1.00 -91.84 399.06 4.10 -87.75 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.12 Total: 14.43 kcal Atomic # 6 Polarization: 20.48 SS G_CDS: 7.54 Total: 28.02 kcal Atomic # 7 Polarization: -123.97 SS G_CDS: -5.47 Total: -129.44 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -0.11 Total: -48.41 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -91.84 4.10 -87.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507863529.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.151 kcal (2) G-P(sol) polarization free energy of solvation -91.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds