Wall clock time and date at job start Wed Apr 1 2020 04:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47533 * 2 1 4 4 N 1.46498 * 109.47447 * 179.97438 * 3 2 1 5 5 C 1.34780 * 120.00309 * 95.28121 * 4 3 2 6 6 O 1.21534 * 120.00366 * 184.14902 * 5 4 3 7 7 C 1.47890 * 119.99605 * 4.42065 * 5 4 3 8 8 C 1.36292 * 119.75445 * 274.82411 * 7 5 4 9 9 C 1.40413 * 119.90320 * 179.97438 * 8 7 5 10 10 C 1.36112 * 119.41589 * 0.02562 * 9 8 7 11 11 C 1.41240 * 119.51048 * 359.97438 * 10 9 8 12 12 O 1.21964 * 119.95793 * 180.02562 * 11 10 9 13 13 N 1.34675 * 120.08444 * 359.72671 * 11 10 9 14 14 C 1.46501 * 119.70485 * 180.29011 * 13 11 10 15 15 C 1.46504 * 120.00248 * 275.27955 * 4 3 2 16 16 C 1.53036 * 109.46326 * 240.07099 * 15 4 3 17 17 C 1.53184 * 109.31447 * 178.61449 * 16 15 4 18 18 N 1.46928 * 108.77907 * 54.63134 * 17 16 15 19 19 C 1.36931 * 120.63047 * 126.41363 * 18 17 16 20 20 H 1.08003 * 120.00281 * 328.45392 * 19 18 17 21 21 C 1.38813 * 119.99791 * 148.45481 * 19 18 17 22 22 N 1.31618 * 120.00153 * 345.85953 * 21 19 18 23 23 Si 1.86807 * 119.99960 * 165.86075 * 21 19 18 24 24 H 1.48499 * 109.46799 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46870 * 119.99800 * 23 21 19 26 26 H 1.48494 * 109.46919 * 240.00164 * 23 21 19 27 27 C 1.46921 * 118.73611 * 306.39500 * 18 17 16 28 28 C 1.53039 * 109.45915 * 119.99841 * 15 4 3 29 29 H 1.09004 * 109.47329 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47047 * 300.00611 * 1 2 3 31 31 H 1.09002 * 109.46631 * 59.99977 * 1 2 3 32 32 H 1.08995 * 109.47533 * 239.99409 * 2 1 3 33 33 H 1.09008 * 109.46946 * 119.99691 * 2 1 3 34 34 H 1.08998 * 109.47453 * 59.99637 * 3 2 1 35 35 H 1.09002 * 109.47181 * 299.99687 * 3 2 1 36 36 H 1.07999 * 120.05343 * 0.02562 * 8 7 5 37 37 H 1.07997 * 120.29462 * 180.02562 * 9 8 7 38 38 H 1.08003 * 120.24386 * 179.97438 * 10 9 8 39 39 H 1.08997 * 109.47483 * 272.76690 * 14 13 11 40 40 H 1.09004 * 109.47019 * 32.76250 * 14 13 11 41 41 H 1.09002 * 109.47300 * 152.75911 * 14 13 11 42 42 H 1.09005 * 109.45439 * 0.02744 * 15 4 3 43 43 H 1.09001 * 109.49390 * 298.56453 * 16 15 4 44 44 H 1.08996 * 109.49810 * 58.65693 * 16 15 4 45 45 H 1.09001 * 109.58379 * 294.84232 * 17 16 15 46 46 H 1.09000 * 109.70749 * 174.49054 * 17 16 15 47 47 H 0.97001 * 119.99884 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.58925 * 293.82142 * 27 18 17 49 49 H 1.09000 * 109.70582 * 173.46492 * 27 18 17 50 50 H 1.09003 * 109.49562 * 301.33986 * 28 15 4 51 51 H 1.08993 * 109.49713 * 61.40322 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1795 1.5496 -1.1614 6 8 5.3925 1.4739 -1.1692 7 6 3.4439 1.7655 -2.4260 8 6 2.9427 0.6971 -3.1078 9 6 2.2433 0.8984 -4.3086 10 6 2.0740 2.1642 -4.7795 11 6 2.6038 3.2534 -4.0529 12 8 2.4565 4.3911 -4.4671 13 7 3.2661 3.0379 -2.9002 14 6 3.8066 4.1742 -2.1501 15 6 4.2371 1.3258 1.2643 16 6 5.1154 2.5635 1.4608 17 6 5.8528 2.4542 2.7991 18 7 6.5868 1.1819 2.8322 19 6 7.9282 1.1573 3.1062 20 1 8.5551 1.9856 2.8105 21 6 8.4823 0.0677 3.7639 22 7 7.7018 -0.8032 4.3677 23 14 10.3360 -0.1625 3.7922 24 1 10.9838 0.9462 3.0464 25 1 10.8138 -0.1583 5.1982 26 1 10.6836 -1.4579 3.1550 27 6 5.8541 -0.0635 2.5661 28 6 5.1168 0.0740 1.2303 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6768 1.9563 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 3.0825 -0.3030 -2.7247 37 1 1.8431 0.0564 -4.8538 38 1 1.5386 2.3345 -5.7019 39 1 4.8044 4.4116 -2.5190 40 1 3.1557 5.0387 -2.2811 41 1 3.8617 3.9180 -1.0920 42 1 3.5282 1.2492 2.0888 43 1 5.8410 2.6271 0.6498 44 1 4.4907 3.4566 1.4615 45 1 5.1322 2.4818 3.6165 46 1 6.5533 3.2830 2.9015 47 1 8.0890 -1.5648 4.8270 48 1 5.1336 -0.2413 3.3644 49 1 6.5539 -0.8975 2.5130 50 1 4.4929 -0.8047 1.0669 51 1 5.8419 0.1608 0.4212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566699742.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:00 Heat of formation + Delta-G solvation = -8.690079 kcal Electronic energy + Delta-G solvation = -32589.198241 eV Core-core repulsion = 28489.974630 eV Total energy + Delta-G solvation = -4099.223610 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.84129 -40.11400 -37.48920 -36.76857 -36.16140 -34.88404 -33.51050 -32.18799 -30.77292 -30.05219 -29.42266 -27.90591 -26.47948 -25.73319 -24.31908 -22.97000 -22.41065 -22.32037 -21.80237 -19.99319 -19.40119 -17.75348 -17.63823 -17.22376 -16.82715 -16.44009 -15.83570 -15.61471 -15.03788 -14.99695 -14.76351 -14.71345 -14.24096 -13.82025 -13.69418 -13.41788 -13.39671 -13.10790 -13.02337 -12.78604 -12.66369 -12.60225 -12.43797 -12.28935 -12.13999 -11.86193 -11.59477 -11.50555 -11.25659 -11.04434 -10.93252 -10.74562 -10.52984 -10.40194 -10.27429 -10.22895 -10.10901 -9.80341 -9.65586 -9.46988 -8.66117 -8.42861 -8.28825 -6.63253 -5.79390 -3.25018 0.38214 1.50096 1.89228 2.56680 2.83972 3.32252 3.37940 3.45775 3.48716 3.88181 4.30879 4.50035 4.56860 4.59363 4.72359 4.83787 4.92040 5.01582 5.04739 5.09193 5.14667 5.23672 5.31379 5.39490 5.40807 5.44660 5.50379 5.55114 5.60098 5.70953 5.71574 5.78590 5.80438 5.91176 5.98623 6.05702 6.09106 6.17467 6.25720 6.40702 6.49494 6.65886 6.72400 6.75040 6.87368 6.94776 7.20059 7.39999 7.63344 7.72759 7.81509 7.92486 8.47408 9.21882 9.83585 10.41397 11.29424 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.003113 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.885884 B = 8993.107564 C = 9735.428907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.104 3.896 4 N -0.595 5.595 5 C 0.551 3.449 6 O -0.490 6.490 7 C 0.138 3.862 8 C -0.195 4.195 9 C -0.016 4.016 10 C -0.233 4.233 11 C 0.515 3.485 12 O -0.550 6.550 13 N -0.483 5.483 14 C 0.056 3.944 15 C 0.159 3.841 16 C -0.149 4.149 17 C 0.151 3.849 18 N -0.589 5.589 19 C -0.251 4.251 20 H 0.064 0.936 21 C 0.005 3.995 22 N -0.904 5.904 23 Si 0.902 3.098 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.178 3.822 28 C -0.156 4.156 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.151 0.849 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.047 0.953 45 H 0.017 0.983 46 H 0.057 0.943 47 H 0.253 0.747 48 H 0.017 0.983 49 H 0.086 0.914 50 H 0.046 0.954 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.249 2.040 -12.593 21.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C -0.019 4.019 4 N -0.327 5.327 5 C 0.334 3.666 6 O -0.363 6.363 7 C 0.027 3.973 8 C -0.219 4.219 9 C -0.038 4.038 10 C -0.254 4.254 11 C 0.317 3.683 12 O -0.432 6.432 13 N -0.196 5.196 14 C -0.085 4.085 15 C 0.058 3.942 16 C -0.189 4.189 17 C 0.024 3.976 18 N -0.312 5.312 19 C -0.380 4.380 20 H 0.081 0.919 21 C -0.194 4.194 22 N -0.548 5.548 23 Si 0.732 3.268 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.215 1.215 27 C 0.052 3.948 28 C -0.196 4.196 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.167 0.833 37 H 0.159 0.841 38 H 0.169 0.831 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.066 0.934 45 H 0.035 0.965 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.035 0.965 49 H 0.104 0.896 50 H 0.065 0.935 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.580 2.658 -12.693 21.049 hybrid contribution 0.810 -0.396 0.037 0.902 sum -15.771 2.262 -12.656 20.347 Atomic orbital electron populations 1.21692 0.95004 1.02105 1.01855 1.21982 0.96196 0.96626 1.03363 1.21758 0.79346 0.97701 1.03097 1.48418 1.06612 1.71177 1.06538 1.17973 0.87215 0.78799 0.82564 1.90919 1.12376 1.47792 1.85180 1.20547 0.95817 0.85255 0.95666 1.20740 1.04925 0.98155 0.98110 1.21383 0.91769 0.97578 0.93067 1.22291 1.07679 0.91955 1.03521 1.17318 0.79824 0.91015 0.80157 1.90941 1.60918 1.23753 1.67602 1.45530 1.46041 1.06166 1.21880 1.22250 1.01060 0.88787 0.96437 1.21272 0.93295 0.97542 0.82090 1.22473 0.99103 0.95049 1.02230 1.20823 0.94218 0.90454 0.92080 1.43991 1.05877 1.00259 1.81025 1.19191 0.83186 1.05157 1.30510 0.91862 1.25120 0.97829 0.99444 0.96963 1.70007 1.33580 1.14987 1.36219 0.86229 0.85548 0.77819 0.77235 1.20189 1.21708 1.21539 1.20686 0.94102 0.90637 0.89382 1.22687 0.99056 0.94227 1.03600 0.92266 0.92514 0.92722 0.91498 0.90828 0.89853 0.90901 0.83339 0.84079 0.83083 0.89943 0.88415 0.89652 0.89836 0.90322 0.93438 0.96540 0.92483 0.93714 0.96479 0.89612 0.93497 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.14 -1.17 6.26 -26.73 -0.17 -1.34 16 3 C 0.10 0.95 5.28 -4.05 -0.02 0.92 16 4 N -0.60 -7.39 2.42 -167.15 -0.41 -7.80 16 5 C 0.55 7.65 4.66 -12.31 -0.06 7.59 16 6 O -0.49 -8.89 13.36 5.34 0.07 -8.82 16 7 C 0.14 1.61 4.39 -82.33 -0.36 1.25 16 8 C -0.20 -1.82 9.16 -39.46 -0.36 -2.18 16 9 C -0.02 -0.13 10.08 -39.53 -0.40 -0.52 16 10 C -0.23 -2.26 10.00 -39.21 -0.39 -2.65 16 11 C 0.52 6.67 7.43 -15.16 -0.11 6.55 16 12 O -0.55 -8.83 16.69 4.95 0.08 -8.74 16 13 N -0.48 -5.84 3.02 -122.80 -0.37 -6.21 16 14 C 0.06 0.63 9.97 59.85 0.60 1.22 16 15 C 0.16 2.45 2.51 -67.89 -0.17 2.28 16 16 C -0.15 -2.51 5.27 -26.62 -0.14 -2.65 16 17 C 0.15 3.08 6.52 -3.71 -0.02 3.05 16 18 N -0.59 -14.54 2.98 -172.32 -0.51 -15.06 16 19 C -0.25 -6.89 9.56 -15.06 -0.14 -7.03 16 20 H 0.06 1.74 7.87 -52.48 -0.41 1.32 16 21 C 0.01 0.14 4.96 -17.43 -0.09 0.05 16 22 N -0.90 -25.93 11.28 55.49 0.63 -25.31 16 23 Si 0.90 21.82 29.58 -169.99 -5.03 16.80 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 27 C 0.18 4.13 5.26 -3.71 -0.02 4.11 16 28 C -0.16 -2.91 5.26 -26.61 -0.14 -3.05 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.54 6.97 -51.93 -0.36 0.18 16 33 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.08 0.68 8.03 -51.93 -0.42 0.27 16 35 H 0.07 0.62 6.61 -51.93 -0.34 0.28 16 36 H 0.15 1.20 7.44 -52.49 -0.39 0.81 16 37 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.10 1.02 7.48 -51.93 -0.39 0.64 16 41 H 0.08 0.93 6.78 -51.93 -0.35 0.58 16 42 H 0.08 1.21 7.86 -51.93 -0.41 0.80 16 43 H 0.08 1.52 6.36 -51.93 -0.33 1.19 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 2.27 6.24 -51.93 -0.32 1.94 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.08 1.73 6.07 -51.93 -0.32 1.41 16 LS Contribution 400.47 15.07 6.04 6.04 Total: -1.00 -33.26 400.47 -9.38 -42.63 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -8.24 Total: -0.53 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -1.63 Total: 7.01 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.66 Total: -54.37 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.15 Total: -17.57 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.26 -9.38 -42.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566699742.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.944 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds