Wall clock time and date at job start Wed Apr 1 2020 04:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47533 * 2 1 4 4 N 1.46498 * 109.47447 * 179.97438 * 3 2 1 5 5 C 1.34780 * 120.00309 * 95.28121 * 4 3 2 6 6 O 1.21534 * 120.00366 * 184.14902 * 5 4 3 7 7 C 1.47890 * 119.99605 * 4.42065 * 5 4 3 8 8 C 1.36292 * 119.75445 * 274.82411 * 7 5 4 9 9 C 1.40413 * 119.90320 * 179.97438 * 8 7 5 10 10 C 1.36112 * 119.41589 * 0.02562 * 9 8 7 11 11 C 1.41240 * 119.51048 * 359.97438 * 10 9 8 12 12 O 1.21964 * 119.95793 * 180.02562 * 11 10 9 13 13 N 1.34675 * 120.08444 * 359.72671 * 11 10 9 14 14 C 1.46501 * 119.70485 * 180.29011 * 13 11 10 15 15 C 1.46504 * 120.00248 * 275.27955 * 4 3 2 16 16 C 1.53036 * 109.46326 * 240.07099 * 15 4 3 17 17 C 1.53184 * 109.31447 * 178.61449 * 16 15 4 18 18 N 1.46928 * 108.77907 * 54.63134 * 17 16 15 19 19 C 1.36931 * 120.63047 * 126.41363 * 18 17 16 20 20 H 1.08003 * 120.00281 * 328.45392 * 19 18 17 21 21 C 1.38813 * 119.99791 * 148.45481 * 19 18 17 22 22 N 1.31618 * 120.00153 * 345.85953 * 21 19 18 23 23 Si 1.86807 * 119.99960 * 165.86075 * 21 19 18 24 24 H 1.48499 * 109.46799 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46870 * 119.99800 * 23 21 19 26 26 H 1.48494 * 109.46919 * 240.00164 * 23 21 19 27 27 C 1.46921 * 118.73611 * 306.39500 * 18 17 16 28 28 C 1.53039 * 109.45915 * 119.99841 * 15 4 3 29 29 H 1.09004 * 109.47329 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47047 * 300.00611 * 1 2 3 31 31 H 1.09002 * 109.46631 * 59.99977 * 1 2 3 32 32 H 1.08995 * 109.47533 * 239.99409 * 2 1 3 33 33 H 1.09008 * 109.46946 * 119.99691 * 2 1 3 34 34 H 1.08998 * 109.47453 * 59.99637 * 3 2 1 35 35 H 1.09002 * 109.47181 * 299.99687 * 3 2 1 36 36 H 1.07999 * 120.05343 * 0.02562 * 8 7 5 37 37 H 1.07997 * 120.29462 * 180.02562 * 9 8 7 38 38 H 1.08003 * 120.24386 * 179.97438 * 10 9 8 39 39 H 1.08997 * 109.47483 * 272.76690 * 14 13 11 40 40 H 1.09004 * 109.47019 * 32.76250 * 14 13 11 41 41 H 1.09002 * 109.47300 * 152.75911 * 14 13 11 42 42 H 1.09005 * 109.45439 * 0.02744 * 15 4 3 43 43 H 1.09001 * 109.49390 * 298.56453 * 16 15 4 44 44 H 1.08996 * 109.49810 * 58.65693 * 16 15 4 45 45 H 1.09001 * 109.58379 * 294.84232 * 17 16 15 46 46 H 1.09000 * 109.70749 * 174.49054 * 17 16 15 47 47 H 0.97001 * 119.99884 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.58925 * 293.82142 * 27 18 17 49 49 H 1.09000 * 109.70582 * 173.46492 * 27 18 17 50 50 H 1.09003 * 109.49562 * 301.33986 * 28 15 4 51 51 H 1.08993 * 109.49713 * 61.40322 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1795 1.5496 -1.1614 6 8 5.3925 1.4739 -1.1692 7 6 3.4439 1.7655 -2.4260 8 6 2.9427 0.6971 -3.1078 9 6 2.2433 0.8984 -4.3086 10 6 2.0740 2.1642 -4.7795 11 6 2.6038 3.2534 -4.0529 12 8 2.4565 4.3911 -4.4671 13 7 3.2661 3.0379 -2.9002 14 6 3.8066 4.1742 -2.1501 15 6 4.2371 1.3258 1.2643 16 6 5.1154 2.5635 1.4608 17 6 5.8528 2.4542 2.7991 18 7 6.5868 1.1819 2.8322 19 6 7.9282 1.1573 3.1062 20 1 8.5551 1.9856 2.8105 21 6 8.4823 0.0677 3.7639 22 7 7.7018 -0.8032 4.3677 23 14 10.3360 -0.1625 3.7922 24 1 10.9838 0.9462 3.0464 25 1 10.8138 -0.1583 5.1982 26 1 10.6836 -1.4579 3.1550 27 6 5.8541 -0.0635 2.5661 28 6 5.1168 0.0740 1.2303 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6768 1.9563 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 3.0825 -0.3030 -2.7247 37 1 1.8431 0.0564 -4.8538 38 1 1.5386 2.3345 -5.7019 39 1 4.8044 4.4116 -2.5190 40 1 3.1557 5.0387 -2.2811 41 1 3.8617 3.9180 -1.0920 42 1 3.5282 1.2492 2.0888 43 1 5.8410 2.6271 0.6498 44 1 4.4907 3.4566 1.4615 45 1 5.1322 2.4818 3.6165 46 1 6.5533 3.2830 2.9015 47 1 8.0890 -1.5648 4.8270 48 1 5.1336 -0.2413 3.3644 49 1 6.5539 -0.8975 2.5130 50 1 4.4929 -0.8047 1.0669 51 1 5.8419 0.1608 0.4212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566699742.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:59 Heat of formation + Delta-G solvation = -28.343565 kcal Electronic energy + Delta-G solvation = -32590.050480 eV Core-core repulsion = 28489.974630 eV Total energy + Delta-G solvation = -4100.075849 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.76896 -41.22170 -38.88762 -37.85198 -37.30431 -35.68244 -34.92304 -33.49969 -32.11502 -31.57005 -30.82034 -28.76954 -27.40891 -27.12908 -25.59332 -23.97297 -23.88237 -23.65933 -22.64632 -21.32097 -20.68714 -19.02661 -18.55159 -18.48611 -17.82524 -17.66896 -17.01043 -16.72444 -16.57523 -15.97592 -15.74470 -15.58697 -15.48939 -15.30743 -15.24268 -14.78345 -14.49526 -14.38395 -14.18939 -13.98887 -13.81510 -13.51037 -13.32155 -13.18891 -13.10520 -12.98576 -12.91888 -12.70177 -12.67792 -12.60639 -12.26907 -12.18674 -11.99757 -11.82826 -11.62746 -11.47948 -11.41503 -11.23516 -11.14294 -10.77705 -10.55061 -9.75679 -9.16503 -8.63488 -7.89008 -5.37022 -0.40914 0.67637 0.90036 1.43121 1.45594 1.55767 1.56735 1.85908 2.49402 2.49659 2.95304 3.27458 3.50775 3.68631 3.84572 3.90993 3.95100 3.99131 4.03921 4.14655 4.17313 4.19897 4.30702 4.35068 4.38994 4.49587 4.52443 4.55471 4.64361 4.68436 4.81879 4.82756 4.84775 4.94203 4.98162 5.00073 5.05768 5.14331 5.18365 5.26044 5.29072 5.37497 5.40096 5.47671 5.50349 5.56031 5.64949 5.74501 5.86464 6.21816 6.40765 6.81457 6.85397 7.15699 7.85495 8.37145 9.17166 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.003113 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.885884 B = 8993.107564 C = 9735.428907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.101 3.899 4 N -0.586 5.586 5 C 0.556 3.444 6 O -0.540 6.540 7 C 0.115 3.885 8 C -0.175 4.175 9 C 0.005 3.995 10 C -0.237 4.237 11 C 0.502 3.498 12 O -0.595 6.595 13 N -0.484 5.484 14 C 0.057 3.943 15 C 0.169 3.831 16 C -0.135 4.135 17 C 0.148 3.852 18 N -0.610 5.610 19 C -0.264 4.264 20 H 0.056 0.944 21 C -0.044 4.044 22 N -0.930 5.930 23 Si 0.962 3.038 24 H -0.272 1.272 25 H -0.287 1.287 26 H -0.290 1.290 27 C 0.187 3.813 28 C -0.139 4.139 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.167 0.833 37 H 0.187 0.813 38 H 0.169 0.831 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.052 0.948 44 H 0.080 0.920 45 H 0.027 0.973 46 H 0.050 0.950 47 H 0.251 0.749 48 H 0.007 0.993 49 H 0.045 0.955 50 H 0.066 0.934 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.694 1.381 -13.946 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C -0.020 4.020 4 N -0.317 5.317 5 C 0.341 3.659 6 O -0.416 6.416 7 C 0.005 3.995 8 C -0.199 4.199 9 C -0.016 4.016 10 C -0.259 4.259 11 C 0.306 3.694 12 O -0.481 6.481 13 N -0.197 5.197 14 C -0.085 4.085 15 C 0.067 3.933 16 C -0.175 4.175 17 C 0.022 3.978 18 N -0.333 5.333 19 C -0.394 4.394 20 H 0.074 0.926 21 C -0.240 4.240 22 N -0.576 5.576 23 Si 0.790 3.210 24 H -0.196 1.196 25 H -0.214 1.214 26 H -0.216 1.216 27 C 0.060 3.940 28 C -0.179 4.179 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.184 0.816 37 H 0.204 0.796 38 H 0.186 0.814 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.121 0.879 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.045 0.955 46 H 0.069 0.931 47 H 0.060 0.940 48 H 0.026 0.974 49 H 0.064 0.936 50 H 0.084 0.916 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.076 1.995 -14.044 23.772 hybrid contribution 1.527 -0.222 0.447 1.607 sum -17.549 1.773 -13.597 22.270 Atomic orbital electron populations 1.21654 0.93447 1.02622 1.02454 1.21952 0.97442 0.95563 1.02916 1.22024 0.76731 0.98855 1.04407 1.48290 1.07980 1.70298 1.05083 1.18255 0.86614 0.77628 0.83450 1.90909 1.14682 1.49989 1.86023 1.20325 0.97904 0.85770 0.95493 1.21159 1.02728 0.98111 0.97876 1.21769 0.89837 0.98086 0.91915 1.22474 1.07756 0.91717 1.03933 1.17876 0.79865 0.91392 0.80285 1.90914 1.63006 1.25465 1.68698 1.45502 1.45952 1.06381 1.21854 1.22220 1.00702 0.89115 0.96419 1.20957 0.93229 0.94983 0.84158 1.22260 0.98927 0.97319 0.98989 1.20960 0.94225 0.88332 0.94290 1.44238 1.05573 1.02054 1.81447 1.19425 0.84868 1.05057 1.30058 0.92598 1.25794 1.01650 0.99407 0.97120 1.70133 1.34988 1.15337 1.37097 0.85293 0.81029 0.77534 0.77125 1.19643 1.21397 1.21624 1.20458 0.93082 0.89040 0.91392 1.22385 0.98875 0.96974 0.99641 0.91820 0.92232 0.91845 0.91237 0.92064 0.88356 0.89821 0.81603 0.79561 0.81378 0.90882 0.88017 0.89448 0.87895 0.92900 0.90103 0.95534 0.93135 0.94027 0.97446 0.93611 0.91569 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.91 71.98 0.71 -0.65 16 2 C -0.14 -1.84 6.26 30.59 0.19 -1.65 16 3 C 0.10 1.52 5.28 86.38 0.46 1.98 16 4 N -0.59 -13.43 2.42 -801.04 -1.94 -15.37 16 5 C 0.56 14.82 4.66 86.80 0.40 15.22 16 6 O -0.54 -19.84 13.36 -3.82 -0.05 -19.89 16 7 C 0.12 2.46 4.39 40.45 0.18 2.64 16 8 C -0.18 -2.64 9.16 22.35 0.20 -2.43 16 9 C 0.01 0.05 10.08 22.30 0.22 0.28 16 10 C -0.24 -3.89 10.00 22.51 0.23 -3.67 16 11 C 0.50 12.37 7.43 85.00 0.63 13.00 16 12 O -0.59 -19.05 16.69 -5.20 -0.09 -19.14 16 13 N -0.48 -11.19 3.02 -660.59 -1.99 -13.19 16 14 C 0.06 1.27 9.97 127.77 1.27 2.55 16 15 C 0.17 4.98 2.51 45.02 0.11 5.09 16 16 C -0.14 -4.47 5.27 30.67 0.16 -4.31 16 17 C 0.15 6.03 6.52 86.36 0.56 6.59 16 18 N -0.61 -30.88 2.98 -699.11 -2.08 -32.96 16 19 C -0.26 -14.92 9.56 84.03 0.80 -14.12 16 20 H 0.06 3.17 7.87 -2.91 -0.02 3.15 16 21 C -0.04 -2.49 4.96 84.86 0.42 -2.06 16 22 N -0.93 -54.88 11.28 21.65 0.24 -54.63 16 23 Si 0.96 45.90 29.58 68.60 2.03 47.93 16 24 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 27 C 0.19 8.88 5.26 86.36 0.45 9.33 16 28 C -0.14 -5.20 5.26 30.67 0.16 -5.03 16 29 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.88 6.97 -2.39 -0.02 0.86 16 33 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.10 1.24 8.03 -2.39 -0.02 1.23 16 35 H 0.08 1.15 6.61 -2.39 -0.02 1.13 16 36 H 0.17 1.97 7.44 -2.91 -0.02 1.94 16 37 H 0.19 0.42 8.06 -2.91 -0.02 0.40 16 38 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.10 2.15 7.48 -2.38 -0.02 2.13 16 41 H 0.09 1.86 6.78 -2.39 -0.02 1.84 16 42 H 0.10 2.71 7.86 -2.38 -0.02 2.69 16 43 H 0.05 2.07 6.36 -2.39 -0.02 2.06 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 47 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 48 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 49 H 0.05 2.52 6.24 -2.39 -0.01 2.51 16 50 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 51 H 0.05 2.36 6.07 -2.39 -0.01 2.34 16 Total: -1.00 -76.56 400.47 4.22 -72.34 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.92 Total: 12.15 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 7.18 Total: 22.76 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -5.77 Total: -116.15 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -0.14 Total: -39.02 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -76.56 4.22 -72.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566699742.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.000 kcal (2) G-P(sol) polarization free energy of solvation -76.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds