Wall clock time and date at job start Wed Apr 1 2020 05:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47449 * 2 1 4 4 N 1.46494 * 109.47555 * 180.02562 * 3 2 1 5 5 C 1.34774 * 120.00147 * 99.43542 * 4 3 2 6 6 O 1.21585 * 119.99676 * 187.09928 * 5 4 3 7 7 C 1.47612 * 120.00253 * 7.10101 * 5 4 3 8 8 C 1.40281 * 120.49844 * 149.97646 * 7 5 4 9 9 C 1.37953 * 118.35483 * 179.97438 * 8 7 5 10 10 C 1.39166 * 119.26597 * 0.02562 * 9 8 7 11 11 O 1.35498 * 119.52781 * 180.02562 * 10 9 8 12 12 C 1.42901 * 117.00437 * 179.97438 * 11 10 9 13 13 C 1.52991 * 109.47403 * 180.02562 * 12 11 10 14 14 N 1.32405 * 120.95034 * 359.97438 * 10 9 8 15 15 C 1.31673 * 121.79655 * 0.02562 * 14 10 9 16 16 C 1.46503 * 119.99837 * 279.44159 * 4 3 2 17 17 H 1.09004 * 110.64191 * 25.26149 * 16 4 3 18 18 C 1.55154 * 110.71898 * 262.12391 * 16 4 3 19 19 C 1.55393 * 101.36367 * 277.04271 * 18 16 4 20 20 N 1.47429 * 104.87324 * 323.01338 * 19 18 16 21 21 C 1.36931 * 125.64950 * 204.09460 * 20 19 18 22 22 H 1.07998 * 120.00309 * 180.02562 * 21 20 19 23 23 C 1.38812 * 120.00169 * 0.04517 * 21 20 19 24 24 N 1.31620 * 119.99864 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00141 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46479 * 60.00725 * 25 23 21 27 27 H 1.48508 * 109.47011 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47321 * 300.00436 * 25 23 21 29 29 C 1.47023 * 108.69790 * 24.13525 * 20 19 18 30 30 H 1.09003 * 109.47014 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46849 * 300.00078 * 1 2 3 32 32 H 1.08991 * 109.46960 * 60.00300 * 1 2 3 33 33 H 1.09005 * 109.46883 * 239.99522 * 2 1 3 34 34 H 1.09003 * 109.46721 * 120.00095 * 2 1 3 35 35 H 1.09004 * 109.47222 * 59.99393 * 3 2 1 36 36 H 1.09001 * 109.46793 * 300.00400 * 3 2 1 37 37 H 1.07995 * 120.82483 * 359.70949 * 8 7 5 38 38 H 1.08001 * 120.36943 * 179.97438 * 9 8 7 39 39 H 1.09005 * 109.47115 * 300.00232 * 12 11 10 40 40 H 1.09003 * 109.46752 * 59.99189 * 12 11 10 41 41 H 1.09001 * 109.47217 * 299.99443 * 13 12 11 42 42 H 1.08995 * 109.47598 * 60.00071 * 13 12 11 43 43 H 1.09003 * 109.47272 * 180.02562 * 13 12 11 44 44 H 1.07993 * 119.68452 * 180.02562 * 15 14 10 45 45 H 1.09004 * 111.00715 * 35.20719 * 18 16 4 46 46 H 1.08997 * 111.00744 * 159.06588 * 18 16 4 47 47 H 1.09004 * 110.34034 * 204.16763 * 19 18 16 48 48 H 1.08994 * 110.44311 * 81.91917 * 19 18 16 49 49 H 0.96999 * 120.00433 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.87745 * 239.51629 * 29 20 19 51 51 H 1.09005 * 109.88060 * 118.35989 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1785 1.6340 -1.1522 6 8 5.3873 1.5063 -1.1780 7 6 3.4485 1.9988 -2.3823 8 6 4.0638 2.7830 -3.3693 9 6 3.3410 3.0973 -4.5014 10 6 2.0358 2.6308 -4.6266 11 8 1.3211 2.9359 -5.7366 12 6 -0.0128 2.4287 -5.8092 13 6 -0.6564 2.8725 -7.1243 14 7 1.4826 1.8923 -3.6770 15 6 2.1361 1.5688 -2.5806 16 6 4.2381 1.2341 1.2506 17 1 3.6316 0.6743 1.9627 18 6 4.6850 2.5904 1.8573 19 6 5.9903 2.8668 1.0609 20 7 6.6186 1.5437 0.8930 21 6 7.9523 1.3142 0.6842 22 1 8.3153 0.3032 0.5727 23 6 8.8378 2.3810 0.6162 24 7 8.3956 3.6131 0.7530 25 14 10.6574 2.0678 0.3320 26 1 10.8422 1.3651 -0.9630 27 1 11.3836 3.3628 0.3011 28 1 11.1927 1.2267 1.4325 29 6 5.5757 0.5115 0.9861 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9562 -0.8900 37 1 5.0769 3.1356 -3.2440 38 1 3.7827 3.6994 -5.2816 39 1 0.0096 1.3397 -5.7654 40 1 -0.5941 2.8139 -4.9714 41 1 -0.6790 3.9614 -7.1684 42 1 -0.0751 2.4869 -7.9617 43 1 -1.6741 2.4860 -7.1794 44 1 1.6518 0.9642 -1.8281 45 1 3.9402 3.3649 1.6739 46 1 4.8906 2.4929 2.9233 47 1 6.6461 3.5291 1.6262 48 1 5.7584 3.3027 0.0892 49 1 9.0144 4.3586 0.7059 50 1 5.7991 -0.1680 1.8086 51 1 5.5185 -0.0431 0.0494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567684821.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:34 Heat of formation + Delta-G solvation = 45.897943 kcal Electronic energy + Delta-G solvation = -32214.427975 eV Core-core repulsion = 28117.571479 eV Total energy + Delta-G solvation = -4096.856496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.12964 -39.87346 -38.07171 -36.38625 -36.05447 -32.99936 -32.54553 -32.31780 -31.61159 -30.18087 -28.86722 -27.29709 -26.19744 -24.74936 -24.23136 -23.80029 -22.55843 -21.80226 -20.96826 -19.90208 -18.86838 -18.63373 -17.48262 -16.97622 -16.60579 -16.49998 -15.70910 -15.40734 -15.06061 -14.43882 -14.39053 -14.09311 -14.05065 -13.95959 -13.59120 -13.34790 -13.30517 -13.01596 -12.86393 -12.77807 -12.49728 -12.11475 -12.01460 -11.88294 -11.83013 -11.67628 -11.42105 -11.37782 -11.08378 -10.85570 -10.75755 -10.71225 -10.62168 -10.17848 -9.98650 -9.90426 -9.80687 -9.66909 -9.37874 -8.83481 -8.51419 -8.40278 -8.06851 -6.50095 -5.40597 -2.76248 0.81657 1.15068 2.81185 3.16597 3.25339 3.53687 3.57225 3.58943 3.84017 4.10743 4.61176 4.69307 4.69664 4.72524 4.75342 4.82191 4.84130 4.98812 5.03074 5.11819 5.15488 5.26740 5.40119 5.44642 5.49031 5.51280 5.53286 5.54122 5.69143 5.69361 5.71233 5.82065 5.83533 5.84947 5.88426 6.02357 6.09266 6.19607 6.29789 6.36321 6.55882 6.65196 6.73583 6.91884 7.06323 7.28526 7.64061 7.76461 7.81074 7.84856 8.06616 8.60225 8.76821 9.47856 10.09851 10.76973 11.64177 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012330 B = 0.003304 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.324597 B = 8473.564161 C =10194.936004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.152 4.152 3 C 0.079 3.921 4 N -0.603 5.603 5 C 0.540 3.460 6 O -0.450 6.450 7 C -0.209 4.209 8 C 0.014 3.986 9 C -0.195 4.195 10 C 0.330 3.670 11 O -0.306 6.306 12 C 0.065 3.935 13 C -0.154 4.154 14 N -0.545 5.545 15 C 0.133 3.867 16 C 0.136 3.864 17 H 0.081 0.919 18 C -0.162 4.162 19 C 0.163 3.837 20 N -0.577 5.577 21 C -0.194 4.194 22 H 0.071 0.929 23 C -0.018 4.018 24 N -0.927 5.927 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.293 1.293 28 H -0.288 1.288 29 C 0.141 3.859 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.155 0.845 38 H 0.146 0.854 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.192 0.808 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.099 0.901 48 H 0.011 0.989 49 H 0.247 0.753 50 H 0.016 0.984 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.294 -2.838 -7.736 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.191 4.191 3 C -0.045 4.045 4 N -0.338 5.338 5 C 0.325 3.675 6 O -0.320 6.320 7 C -0.215 4.215 8 C -0.012 4.012 9 C -0.216 4.216 10 C 0.152 3.848 11 O -0.213 6.213 12 C -0.010 4.010 13 C -0.211 4.211 14 N -0.269 5.269 15 C -0.023 4.023 16 C 0.033 3.967 17 H 0.099 0.901 18 C -0.202 4.202 19 C 0.038 3.962 20 N -0.302 5.302 21 C -0.323 4.323 22 H 0.089 0.911 23 C -0.212 4.212 24 N -0.577 5.577 25 Si 0.741 3.259 26 H -0.216 1.216 27 H -0.219 1.219 28 H -0.215 1.215 29 C 0.014 3.986 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.172 0.828 38 H 0.164 0.836 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.208 0.792 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.117 0.883 48 H 0.029 0.971 49 H 0.058 0.942 50 H 0.034 0.966 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -22.171 -2.919 -8.159 23.804 hybrid contribution 1.413 0.055 -0.087 1.417 sum -20.758 -2.863 -8.246 22.518 Atomic orbital electron populations 1.21756 0.94944 1.02170 1.02198 1.22074 0.96192 0.97448 1.03353 1.22365 0.81033 0.96815 1.04251 1.47651 1.05294 1.73164 1.07698 1.17990 0.87591 0.79404 0.82518 1.91193 1.11808 1.45333 1.83683 1.21090 0.96429 1.05385 0.98601 1.21594 0.99804 0.90334 0.89453 1.21030 0.92801 1.06724 1.01004 1.20019 0.89100 0.89994 0.85721 1.86198 1.27738 1.71242 1.36138 1.22613 0.80203 0.99281 0.98890 1.21824 1.00445 1.02643 0.96178 1.67407 1.38844 1.17343 1.03314 1.23890 0.90443 0.95273 0.92656 1.22107 0.93390 0.97572 0.83662 0.90085 1.23565 1.00832 0.95626 1.00178 1.21893 0.89176 0.89014 0.96124 1.44122 1.01959 1.00415 1.83699 1.18938 0.81431 0.92526 1.39450 0.91145 1.24657 0.97690 0.95304 1.03579 1.69791 1.32234 0.97287 1.58432 0.86219 0.85468 0.76373 0.77881 1.21603 1.21880 1.21549 1.21410 0.86938 0.92512 0.97729 0.92282 0.92314 0.92363 0.91338 0.90622 0.90513 0.88395 0.82777 0.83631 0.91547 0.91530 0.91651 0.91651 0.90324 0.79211 0.92530 0.91442 0.88321 0.97084 0.94245 0.96614 0.94600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.84 37.16 0.37 -0.72 16 2 C -0.15 -1.41 5.29 -26.73 -0.14 -1.55 16 3 C 0.08 0.88 4.87 -4.05 -0.02 0.86 16 4 N -0.60 -9.49 2.54 -165.22 -0.42 -9.91 16 5 C 0.54 10.03 6.43 -12.44 -0.08 9.95 16 6 O -0.45 -10.74 10.77 5.29 0.06 -10.68 16 7 C -0.21 -3.27 5.61 -104.83 -0.59 -3.86 16 8 C 0.01 0.21 9.72 -38.92 -0.38 -0.17 16 9 C -0.20 -2.57 10.02 -39.34 -0.39 -2.96 16 10 C 0.33 4.36 7.49 -16.96 -0.13 4.24 16 11 O -0.31 -3.64 10.10 -18.19 -0.18 -3.82 16 12 C 0.07 0.59 6.02 37.15 0.22 0.81 16 13 C -0.15 -0.99 10.28 37.15 0.38 -0.61 16 14 N -0.55 -7.12 9.18 -13.29 -0.12 -7.24 16 15 C 0.13 1.74 8.68 -17.14 -0.15 1.59 16 16 C 0.14 2.38 3.61 -66.10 -0.24 2.14 16 17 H 0.08 1.16 7.94 -51.93 -0.41 0.75 16 18 C -0.16 -3.14 6.80 -24.32 -0.17 -3.31 16 19 C 0.16 4.15 5.04 -2.26 -0.01 4.14 16 20 N -0.58 -15.50 2.17 -169.77 -0.37 -15.87 16 21 C -0.19 -5.74 10.27 -15.06 -0.15 -5.90 16 22 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 23 C -0.02 -0.54 5.49 -17.43 -0.10 -0.64 16 24 N -0.93 -28.39 10.09 55.49 0.56 -27.83 16 25 Si 0.91 23.42 29.55 -169.99 -5.02 18.40 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 C 0.14 3.12 5.93 -3.07 -0.02 3.10 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.40 7.86 -51.93 -0.41 -0.01 16 33 H 0.07 0.69 7.18 -51.93 -0.37 0.31 16 34 H 0.08 0.72 8.00 -51.93 -0.42 0.30 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 1.07 3.89 -52.67 -0.20 0.87 16 37 H 0.15 2.49 7.99 -52.49 -0.42 2.07 16 38 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 40 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.19 2.10 2.38 -52.49 -0.13 1.98 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.10 2.85 5.87 -51.93 -0.30 2.54 16 48 H 0.01 0.31 6.56 -51.93 -0.34 -0.03 16 49 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 50 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.04 0.85 6.26 -51.93 -0.32 0.53 16 LS Contribution 394.72 15.07 5.95 5.95 Total: -1.00 -34.84 394.72 -9.08 -43.93 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.94 Total: -0.03 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -1.59 Total: 7.11 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.35 Total: -60.85 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.13 Total: -14.51 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.02 Total: 18.40 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.84 -9.08 -43.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567684821.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.826 kcal (2) G-P(sol) polarization free energy of solvation -34.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds