Wall clock time and date at job start Wed Apr 1 2020 05:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47449 * 2 1 4 4 N 1.46494 * 109.47555 * 180.02562 * 3 2 1 5 5 C 1.34774 * 120.00147 * 99.43542 * 4 3 2 6 6 O 1.21585 * 119.99676 * 187.09928 * 5 4 3 7 7 C 1.47612 * 120.00253 * 7.10101 * 5 4 3 8 8 C 1.40281 * 120.49844 * 149.97646 * 7 5 4 9 9 C 1.37953 * 118.35483 * 179.97438 * 8 7 5 10 10 C 1.39166 * 119.26597 * 0.02562 * 9 8 7 11 11 O 1.35498 * 119.52781 * 180.02562 * 10 9 8 12 12 C 1.42901 * 117.00437 * 179.97438 * 11 10 9 13 13 C 1.52991 * 109.47403 * 180.02562 * 12 11 10 14 14 N 1.32405 * 120.95034 * 359.97438 * 10 9 8 15 15 C 1.31673 * 121.79655 * 0.02562 * 14 10 9 16 16 C 1.46503 * 119.99837 * 279.44159 * 4 3 2 17 17 H 1.09004 * 110.64191 * 25.26149 * 16 4 3 18 18 C 1.55154 * 110.71898 * 262.12391 * 16 4 3 19 19 C 1.55393 * 101.36367 * 277.04271 * 18 16 4 20 20 N 1.47429 * 104.87324 * 323.01338 * 19 18 16 21 21 C 1.36931 * 125.64950 * 204.09460 * 20 19 18 22 22 H 1.07998 * 120.00309 * 180.02562 * 21 20 19 23 23 C 1.38812 * 120.00169 * 0.04517 * 21 20 19 24 24 N 1.31620 * 119.99864 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00141 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46479 * 60.00725 * 25 23 21 27 27 H 1.48508 * 109.47011 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47321 * 300.00436 * 25 23 21 29 29 C 1.47023 * 108.69790 * 24.13525 * 20 19 18 30 30 H 1.09003 * 109.47014 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46849 * 300.00078 * 1 2 3 32 32 H 1.08991 * 109.46960 * 60.00300 * 1 2 3 33 33 H 1.09005 * 109.46883 * 239.99522 * 2 1 3 34 34 H 1.09003 * 109.46721 * 120.00095 * 2 1 3 35 35 H 1.09004 * 109.47222 * 59.99393 * 3 2 1 36 36 H 1.09001 * 109.46793 * 300.00400 * 3 2 1 37 37 H 1.07995 * 120.82483 * 359.70949 * 8 7 5 38 38 H 1.08001 * 120.36943 * 179.97438 * 9 8 7 39 39 H 1.09005 * 109.47115 * 300.00232 * 12 11 10 40 40 H 1.09003 * 109.46752 * 59.99189 * 12 11 10 41 41 H 1.09001 * 109.47217 * 299.99443 * 13 12 11 42 42 H 1.08995 * 109.47598 * 60.00071 * 13 12 11 43 43 H 1.09003 * 109.47272 * 180.02562 * 13 12 11 44 44 H 1.07993 * 119.68452 * 180.02562 * 15 14 10 45 45 H 1.09004 * 111.00715 * 35.20719 * 18 16 4 46 46 H 1.08997 * 111.00744 * 159.06588 * 18 16 4 47 47 H 1.09004 * 110.34034 * 204.16763 * 19 18 16 48 48 H 1.08994 * 110.44311 * 81.91917 * 19 18 16 49 49 H 0.96999 * 120.00433 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.87745 * 239.51629 * 29 20 19 51 51 H 1.09005 * 109.88060 * 118.35989 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1785 1.6340 -1.1522 6 8 5.3873 1.5063 -1.1780 7 6 3.4485 1.9988 -2.3823 8 6 4.0638 2.7830 -3.3693 9 6 3.3410 3.0973 -4.5014 10 6 2.0358 2.6308 -4.6266 11 8 1.3211 2.9359 -5.7366 12 6 -0.0128 2.4287 -5.8092 13 6 -0.6564 2.8725 -7.1243 14 7 1.4826 1.8923 -3.6770 15 6 2.1361 1.5688 -2.5806 16 6 4.2381 1.2341 1.2506 17 1 3.6316 0.6743 1.9627 18 6 4.6850 2.5904 1.8573 19 6 5.9903 2.8668 1.0609 20 7 6.6186 1.5437 0.8930 21 6 7.9523 1.3142 0.6842 22 1 8.3153 0.3032 0.5727 23 6 8.8378 2.3810 0.6162 24 7 8.3956 3.6131 0.7530 25 14 10.6574 2.0678 0.3320 26 1 10.8422 1.3651 -0.9630 27 1 11.3836 3.3628 0.3011 28 1 11.1927 1.2267 1.4325 29 6 5.5757 0.5115 0.9861 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9562 -0.8900 37 1 5.0769 3.1356 -3.2440 38 1 3.7827 3.6994 -5.2816 39 1 0.0096 1.3397 -5.7654 40 1 -0.5941 2.8139 -4.9714 41 1 -0.6790 3.9614 -7.1684 42 1 -0.0751 2.4869 -7.9617 43 1 -1.6741 2.4860 -7.1794 44 1 1.6518 0.9642 -1.8281 45 1 3.9402 3.3649 1.6739 46 1 4.8906 2.4929 2.9233 47 1 6.6461 3.5291 1.6262 48 1 5.7584 3.3027 0.0892 49 1 9.0144 4.3586 0.7059 50 1 5.7991 -0.1680 1.8086 51 1 5.5185 -0.0431 0.0494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567684821.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:33 Heat of formation + Delta-G solvation = 23.142471 kcal Electronic energy + Delta-G solvation = -32215.414726 eV Core-core repulsion = 28117.571479 eV Total energy + Delta-G solvation = -4097.843247 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.29947 -41.11368 -39.18956 -37.89723 -37.37683 -34.62361 -33.69416 -33.24363 -32.91993 -31.41577 -30.64112 -28.94167 -27.17675 -26.52174 -25.47193 -24.93688 -23.45990 -22.67417 -22.31392 -21.83558 -20.18177 -19.68879 -18.85060 -18.49440 -18.13493 -17.36697 -17.00882 -16.70498 -16.41637 -16.34075 -15.63197 -15.58068 -15.05129 -14.96131 -14.88656 -14.70720 -14.35193 -14.26606 -13.88808 -13.72737 -13.60625 -13.44344 -13.31104 -13.26215 -12.95026 -12.84190 -12.72667 -12.62660 -12.49633 -12.30359 -12.06119 -12.02549 -11.89362 -11.76817 -11.68749 -11.53132 -11.35080 -11.07066 -10.93627 -10.65894 -10.26456 -9.60802 -9.45122 -8.65600 -7.65259 -5.02452 -0.31796 0.02699 1.42633 1.47484 1.52960 1.84516 1.89315 2.03487 2.55787 2.66399 3.10058 3.41256 3.47020 3.68000 3.84245 3.89491 3.91950 3.93856 3.96866 4.10834 4.15612 4.18445 4.21667 4.34302 4.39963 4.46716 4.48230 4.56738 4.64477 4.68587 4.74908 4.85307 4.86536 4.96811 4.96879 5.02470 5.08122 5.09356 5.18303 5.19965 5.25134 5.26257 5.30669 5.50836 5.53252 5.78426 5.82725 5.91638 6.10274 6.42622 6.49956 6.56546 7.24068 7.39894 7.95730 8.60449 9.36945 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012330 B = 0.003304 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.324597 B = 8473.564161 C =10194.936004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.074 3.926 4 N -0.597 5.597 5 C 0.537 3.463 6 O -0.519 6.519 7 C -0.230 4.230 8 C 0.000 4.000 9 C -0.193 4.193 10 C 0.333 3.667 11 O -0.310 6.310 12 C 0.057 3.943 13 C -0.149 4.149 14 N -0.541 5.541 15 C 0.151 3.849 16 C 0.150 3.850 17 H 0.131 0.869 18 C -0.146 4.146 19 C 0.170 3.830 20 N -0.594 5.594 21 C -0.210 4.210 22 H 0.067 0.933 23 C -0.076 4.076 24 N -0.952 5.952 25 Si 0.973 3.027 26 H -0.289 1.289 27 H -0.293 1.293 28 H -0.275 1.275 29 C 0.136 3.864 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.131 0.869 38 H 0.164 0.836 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.101 0.899 44 H 0.215 0.785 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.060 0.940 48 H -0.026 1.026 49 H 0.240 0.760 50 H 0.024 0.976 51 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.816 -3.818 -7.570 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C -0.047 4.047 4 N -0.330 5.330 5 C 0.324 3.676 6 O -0.393 6.393 7 C -0.236 4.236 8 C -0.026 4.026 9 C -0.213 4.213 10 C 0.154 3.846 11 O -0.217 6.217 12 C -0.017 4.017 13 C -0.206 4.206 14 N -0.265 5.265 15 C -0.004 4.004 16 C 0.046 3.954 17 H 0.149 0.851 18 C -0.185 4.185 19 C 0.044 3.956 20 N -0.318 5.318 21 C -0.340 4.340 22 H 0.085 0.915 23 C -0.267 4.267 24 N -0.603 5.603 25 Si 0.803 3.197 26 H -0.216 1.216 27 H -0.220 1.220 28 H -0.201 1.201 29 C 0.010 3.990 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.149 0.851 38 H 0.182 0.818 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.120 0.880 44 H 0.230 0.770 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.078 0.922 48 H -0.008 1.008 49 H 0.050 0.950 50 H 0.042 0.958 51 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -25.779 -3.922 -7.987 27.272 hybrid contribution 2.389 0.341 -0.247 2.426 sum -23.390 -3.581 -8.234 25.055 Atomic orbital electron populations 1.21731 0.92860 1.02993 1.03000 1.22030 0.97820 0.95616 1.03114 1.22687 0.77744 0.98656 1.05625 1.47732 1.07263 1.71775 1.06277 1.18449 0.87026 0.78178 0.83923 1.91159 1.14702 1.48571 1.84915 1.20934 0.97626 1.07137 0.97894 1.21487 0.99247 0.91227 0.90615 1.21133 0.92956 1.06649 1.00570 1.20160 0.89132 0.89267 0.86014 1.86217 1.29093 1.71123 1.35255 1.22921 0.78804 0.99451 1.00547 1.21847 1.01385 1.02755 0.94571 1.67515 1.38487 1.17311 1.03159 1.24135 0.89096 0.94310 0.92886 1.22021 0.92148 0.96152 0.85032 0.85106 1.23403 0.97826 0.97374 0.99931 1.21583 0.91435 0.88013 0.94531 1.44348 1.02072 1.02065 1.83283 1.19267 0.83369 0.92461 1.38951 0.91548 1.25467 1.01884 0.95210 1.04185 1.70082 1.33040 0.97769 1.59455 0.85210 0.80508 0.76163 0.77846 1.21588 1.21952 1.20096 1.21540 0.88474 0.92068 0.96899 0.91505 0.91139 0.91979 0.92323 0.90272 0.88033 0.88125 0.85101 0.81818 0.91424 0.91083 0.91598 0.91753 0.87996 0.76977 0.90303 0.90054 0.92240 1.00840 0.95043 0.95796 0.96486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.84 71.98 0.71 -0.78 16 2 C -0.15 -2.20 5.29 30.59 0.16 -2.04 16 3 C 0.07 1.41 4.87 86.38 0.42 1.83 16 4 N -0.60 -18.02 2.54 -794.91 -2.02 -20.03 16 5 C 0.54 20.51 6.43 86.72 0.56 21.07 16 6 O -0.52 -26.32 10.77 -3.98 -0.04 -26.36 16 7 C -0.23 -7.32 5.61 -20.00 -0.11 -7.44 16 8 C 0.00 0.00 9.72 22.70 0.22 0.22 16 9 C -0.19 -5.07 10.02 22.43 0.22 -4.85 16 10 C 0.33 8.37 7.49 84.83 0.64 9.00 16 11 O -0.31 -6.82 10.10 -87.99 -0.89 -7.71 16 12 C 0.06 0.90 6.02 71.98 0.43 1.33 16 13 C -0.15 -1.53 10.28 71.98 0.74 -0.79 16 14 N -0.54 -13.10 9.18 -308.85 -2.83 -15.93 16 15 C 0.15 3.74 8.68 85.03 0.74 4.48 16 16 C 0.15 4.97 3.61 46.18 0.17 5.13 16 17 H 0.13 3.14 7.94 -2.38 -0.02 3.13 16 18 C -0.15 -5.47 6.80 32.16 0.22 -5.26 16 19 C 0.17 9.03 5.04 87.02 0.44 9.47 16 20 N -0.59 -33.13 2.17 -691.02 -1.50 -34.63 16 21 C -0.21 -12.97 10.27 84.03 0.86 -12.11 16 22 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 23 C -0.08 -4.72 5.49 84.86 0.47 -4.25 16 24 N -0.95 -61.29 10.09 21.65 0.22 -61.07 16 25 Si 0.97 49.93 29.55 68.60 2.03 51.96 16 26 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 27 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 28 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 29 C 0.14 6.09 5.93 86.73 0.51 6.60 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.59 7.86 -2.39 -0.02 0.58 16 33 H 0.06 1.02 7.18 -2.38 -0.02 1.00 16 34 H 0.08 1.18 8.00 -2.39 -0.02 1.16 16 35 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.10 1.91 3.89 -3.08 -0.01 1.89 16 37 H 0.13 4.73 7.99 -2.91 -0.02 4.71 16 38 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 39 H 0.07 1.06 8.10 -2.38 -0.02 1.04 16 40 H 0.07 1.06 8.10 -2.39 -0.02 1.05 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.21 4.17 2.38 -2.91 -0.01 4.16 16 45 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 46 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 47 H 0.06 3.62 5.87 -2.38 -0.01 3.61 16 48 H -0.03 -1.57 6.56 -2.39 -0.02 -1.59 16 49 H 0.24 15.06 8.31 -92.71 -0.77 14.29 16 50 H 0.02 1.03 8.14 -2.39 -0.02 1.02 16 51 H 0.02 0.84 6.26 -2.38 -0.01 0.83 16 Total: -1.00 -81.94 394.72 3.29 -78.65 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.93 Total: 13.51 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 7.40 Total: 21.63 kcal Atomic # 7 Polarization: -125.53 SS G_CDS: -6.13 Total: -131.67 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.93 Total: -34.07 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 2.03 Total: 51.96 kcal Total: -81.94 3.29 -78.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567684821.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.790 kcal (2) G-P(sol) polarization free energy of solvation -81.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds