Wall clock time and date at job start Wed Apr 1 2020 05:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47239 * 2 1 4 4 N 1.46500 * 109.47079 * 180.02562 * 3 2 1 5 5 C 1.34770 * 120.00004 * 83.63856 * 4 3 2 6 6 O 1.21611 * 119.99737 * 183.74449 * 5 4 3 7 7 C 1.47415 * 120.00303 * 3.74909 * 5 4 3 8 8 C 1.36097 * 126.44826 * 173.76745 * 7 5 4 9 9 O 1.34259 * 106.94457 * 179.84421 * 8 7 5 10 10 C 1.34044 * 108.22856 * 0.42218 * 9 8 7 11 11 C 1.50707 * 125.37763 * 179.75555 * 10 9 8 12 12 C 1.53782 * 113.61306 * 39.11080 * 11 10 9 13 13 C 1.53954 * 87.02183 * 220.04985 * 12 11 10 14 14 C 1.53784 * 87.11076 * 25.36362 * 13 12 11 15 15 N 1.29930 * 109.24532 * 359.73151 * 10 9 8 16 16 C 1.46500 * 119.99596 * 263.63747 * 4 3 2 17 17 H 1.08996 * 110.64432 * 359.30132 * 16 4 3 18 18 C 1.55158 * 110.72143 * 122.44329 * 16 4 3 19 19 C 1.55117 * 101.48464 * 153.73264 * 18 16 4 20 20 N 1.47420 * 104.94636 * 323.21945 * 19 18 16 21 21 C 1.36938 * 125.65117 * 203.96677 * 20 19 18 22 22 H 1.07997 * 119.99855 * 180.02562 * 21 20 19 23 23 C 1.38813 * 119.99922 * 0.04685 * 21 20 19 24 24 N 1.31615 * 119.99903 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 119.99938 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47314 * 90.00055 * 25 23 21 27 27 H 1.48502 * 109.47414 * 209.99932 * 25 23 21 28 28 H 1.48504 * 109.47305 * 329.99856 * 25 23 21 29 29 C 1.47026 * 108.70144 * 24.01051 * 20 19 18 30 30 H 1.09003 * 109.47020 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46918 * 299.99847 * 1 2 3 32 32 H 1.08998 * 109.47449 * 59.99899 * 1 2 3 33 33 H 1.09003 * 109.46918 * 240.00153 * 2 1 3 34 34 H 1.08998 * 109.47449 * 120.00101 * 2 1 3 35 35 H 1.08997 * 109.46639 * 60.00338 * 3 2 1 36 36 H 1.09007 * 109.46796 * 300.00407 * 3 2 1 37 37 H 1.07999 * 126.52672 * 359.97438 * 8 7 5 38 38 H 1.08997 * 112.84874 * 170.30847 * 11 10 9 39 39 H 1.08998 * 113.61507 * 334.57175 * 12 11 10 40 40 H 1.09000 * 113.61395 * 105.46951 * 12 11 10 41 41 H 1.08999 * 113.53455 * 270.81573 * 13 12 11 42 42 H 1.08990 * 113.74799 * 139.94400 * 13 12 11 43 43 H 1.09002 * 113.61655 * 220.09348 * 14 13 12 44 44 H 1.08995 * 113.61596 * 89.18841 * 14 13 12 45 45 H 1.08996 * 111.00262 * 271.94367 * 18 16 4 46 46 H 1.09004 * 111.00142 * 35.78493 * 18 16 4 47 47 H 1.09008 * 110.41547 * 204.29187 * 19 18 16 48 48 H 1.08993 * 110.30239 * 82.09659 * 19 18 16 49 49 H 0.97001 * 120.00195 * 180.02562 * 24 23 21 50 50 H 1.09009 * 109.87792 * 239.52552 * 29 20 19 51 51 H 1.08994 * 109.88829 * 118.35796 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1784 1.3133 -1.1609 6 8 5.3926 1.2448 -1.1548 7 6 3.4432 1.2552 -2.4373 8 6 3.9880 1.2459 -3.6844 9 8 2.9688 1.1833 -4.5562 10 6 1.8230 1.1640 -3.8609 11 6 0.4408 1.1021 -4.4584 12 6 0.3395 0.1762 -5.6820 13 6 -0.5769 1.2411 -6.3115 14 6 0.1285 2.2686 -5.4106 15 7 2.0921 1.2066 -2.5905 16 6 4.2380 1.5829 1.2601 17 1 3.5472 1.6885 2.0965 18 6 5.1868 0.3752 1.4809 19 6 6.2810 1.0031 2.3834 20 7 6.4451 2.3792 1.8805 21 6 7.5648 3.1539 2.0262 22 1 7.5858 4.1544 1.6200 23 6 8.6731 2.6532 2.6955 24 7 8.6478 1.4336 3.1897 25 14 10.2007 3.7098 2.8936 26 1 10.1028 4.4905 4.1531 27 1 11.4022 2.8385 2.9435 28 1 10.3117 4.6404 1.7417 29 6 5.2071 2.7823 1.1976 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 5.0399 1.2802 -3.9267 38 1 -0.3351 0.9272 -3.7130 39 1 1.2840 0.0456 -6.2101 40 1 -0.1647 -0.7677 -5.4747 41 1 -1.6316 1.1033 -6.0736 42 1 -0.4000 1.3990 -7.3753 43 1 -0.5458 3.0116 -4.9845 44 1 1.0152 2.7112 -5.8644 45 1 4.6721 -0.4373 1.9937 46 1 5.6098 0.0330 0.5364 47 1 7.2157 0.4504 2.2882 48 1 5.9528 1.0156 3.4227 49 1 9.4220 1.0838 3.6578 50 1 5.4215 3.0318 0.1583 51 1 4.7671 3.6413 1.7041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567688236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:19 Heat of formation + Delta-G solvation = 51.960613 kcal Electronic energy + Delta-G solvation = -31828.064419 eV Core-core repulsion = 27731.470821 eV Total energy + Delta-G solvation = -4096.593599 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.58728 -39.87843 -39.02528 -36.71345 -35.94826 -34.69676 -32.89056 -31.67640 -30.76394 -29.02479 -27.33743 -26.53784 -26.15696 -25.86687 -24.75837 -23.47505 -22.05396 -21.69088 -20.87860 -20.03364 -19.85255 -18.81314 -17.47824 -16.95039 -16.86634 -16.59848 -16.07228 -15.66281 -15.55085 -14.75197 -14.56013 -14.47515 -14.22956 -13.76365 -13.64146 -13.27013 -13.24614 -13.02949 -12.89321 -12.85639 -12.40248 -12.23695 -11.95527 -11.60160 -11.57691 -11.43914 -11.41046 -11.23872 -11.00465 -10.97871 -10.89060 -10.78839 -10.73328 -10.66379 -10.41614 -10.22159 -10.00811 -9.70185 -9.45154 -9.20655 -9.06726 -8.51147 -8.16290 -6.66214 -5.50874 -2.91079 1.07271 1.93101 2.40775 3.16234 3.48315 3.48783 3.53019 3.55699 3.64846 4.03344 4.12135 4.33921 4.37797 4.61260 4.68581 4.78735 5.07025 5.11903 5.14782 5.20548 5.24318 5.41258 5.42343 5.44429 5.45416 5.47723 5.49992 5.53432 5.60728 5.61876 5.64444 5.74596 5.87620 5.90023 5.92008 5.93576 6.01451 6.09463 6.21280 6.46654 6.49831 6.65692 6.69629 6.73977 6.86626 7.28866 7.37940 7.63751 7.76280 7.77199 8.00787 8.46992 8.52616 9.36415 9.97570 10.63238 11.53121 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018480 B = 0.002635 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.816505 B =10623.731053 C =11565.747004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.104 3.896 4 N -0.588 5.588 5 C 0.589 3.411 6 O -0.505 6.505 7 C -0.061 4.061 8 C 0.006 3.994 9 O -0.196 6.196 10 C 0.197 3.803 11 C -0.018 4.018 12 C -0.133 4.133 13 C -0.140 4.140 14 C -0.131 4.131 15 N -0.448 5.448 16 C 0.135 3.865 17 H 0.089 0.911 18 C -0.155 4.155 19 C 0.158 3.842 20 N -0.596 5.596 21 C -0.212 4.212 22 H 0.075 0.925 23 C -0.014 4.014 24 N -0.924 5.924 25 Si 0.914 3.086 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.133 3.867 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.230 0.770 38 H 0.131 0.869 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.052 0.948 46 H 0.081 0.919 47 H 0.107 0.893 48 H 0.009 0.991 49 H 0.250 0.750 50 H 0.035 0.965 51 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.076 -3.202 -17.683 29.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C -0.019 4.019 4 N -0.320 5.320 5 C 0.375 3.625 6 O -0.380 6.380 7 C -0.181 4.181 8 C -0.068 4.068 9 O -0.082 6.082 10 C -0.012 4.012 11 C -0.037 4.037 12 C -0.171 4.171 13 C -0.177 4.177 14 C -0.169 4.169 15 N -0.178 5.178 16 C 0.032 3.968 17 H 0.107 0.893 18 C -0.195 4.195 19 C 0.033 3.967 20 N -0.322 5.322 21 C -0.341 4.341 22 H 0.093 0.907 23 C -0.209 4.209 24 N -0.573 5.573 25 Si 0.745 3.255 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.006 3.994 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.246 0.754 38 H 0.149 0.851 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.124 0.876 48 H 0.027 0.973 49 H 0.061 0.939 50 H 0.053 0.947 51 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -22.644 -3.232 -17.101 28.559 hybrid contribution 1.283 0.526 -0.178 1.398 sum -21.360 -2.706 -17.280 27.607 Atomic orbital electron populations 1.21614 0.95583 1.01160 1.01554 1.21776 0.95678 0.97356 1.01821 1.22008 0.78768 0.97401 1.03742 1.47780 1.06853 1.71129 1.06189 1.16811 0.86179 0.77834 0.81671 1.90944 1.12171 1.48719 1.86139 1.22031 0.89559 1.10720 0.95745 1.25300 0.93406 1.01001 0.87057 1.84313 1.15379 1.69287 1.39247 1.26170 0.88956 1.00483 0.85554 1.21264 0.86209 0.99659 0.96566 1.23049 1.01116 0.97830 0.95098 1.22848 0.99213 0.95773 0.99867 1.23021 1.01403 0.96185 0.96307 1.71002 1.13413 1.17374 1.16047 1.22256 0.93308 0.98045 0.83196 0.89264 1.23470 0.97919 0.95751 1.02338 1.21872 0.97275 0.85620 0.91908 1.44291 1.10602 1.13040 1.64226 1.19055 0.90161 0.95723 1.29158 0.90713 1.24757 0.98268 0.96954 1.00944 1.69801 1.29500 1.15220 1.42796 0.86076 0.82763 0.79012 0.77691 1.21794 1.21737 1.20812 1.21479 0.87693 0.93389 0.96799 0.93179 0.93066 0.92521 0.91908 0.92559 0.91370 0.87614 0.75373 0.85072 0.89242 0.90304 0.89514 0.90652 0.90223 0.89411 0.92915 0.90060 0.87572 0.97298 0.93910 0.94698 0.96538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.13 -1.52 5.74 -26.73 -0.15 -1.68 16 3 C 0.10 1.37 4.99 -4.04 -0.02 1.35 16 4 N -0.59 -9.93 2.55 -165.28 -0.42 -10.35 16 5 C 0.59 10.66 6.70 -12.53 -0.08 10.58 16 6 O -0.51 -11.12 13.27 5.27 0.07 -11.05 16 7 C -0.06 -0.89 6.48 -83.02 -0.54 -1.42 16 8 C 0.01 0.07 11.95 29.96 0.36 0.43 16 9 O -0.20 -2.14 10.43 6.52 0.07 -2.07 16 10 C 0.20 2.02 7.32 -13.08 -0.10 1.92 16 11 C -0.02 -0.12 4.29 -90.95 -0.39 -0.51 16 12 C -0.13 -0.70 7.64 -25.83 -0.20 -0.90 16 13 C -0.14 -0.57 8.09 -25.83 -0.21 -0.78 16 14 C -0.13 -0.71 7.63 -25.91 -0.20 -0.90 16 15 N -0.45 -5.54 6.62 -7.66 -0.05 -5.59 16 16 C 0.13 2.62 3.43 -66.09 -0.23 2.40 16 17 H 0.09 1.57 7.78 -51.93 -0.40 1.16 16 18 C -0.16 -3.36 6.43 -24.47 -0.16 -3.51 16 19 C 0.16 4.17 5.89 -2.42 -0.01 4.16 16 20 N -0.60 -16.58 3.40 -169.94 -0.58 -17.15 16 21 C -0.21 -6.34 10.27 -15.06 -0.15 -6.50 16 22 H 0.07 2.17 7.83 -52.49 -0.41 1.76 16 23 C -0.01 -0.43 5.49 -17.43 -0.10 -0.52 16 24 N -0.92 -28.36 10.09 55.49 0.56 -27.80 16 25 Si 0.91 23.25 29.55 -169.99 -5.02 18.22 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 29 C 0.13 3.13 6.49 -3.06 -0.02 3.11 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.84 7.05 -51.93 -0.37 0.47 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.82 7.82 -51.93 -0.41 0.42 16 36 H 0.11 1.37 5.30 -51.92 -0.28 1.10 16 37 H 0.23 2.36 8.06 -52.49 -0.42 1.93 16 38 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.54 7.85 -51.93 -0.41 0.14 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.08 1.91 5.90 -51.93 -0.31 1.61 16 47 H 0.11 3.15 5.87 -51.92 -0.30 2.84 16 48 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.25 7.41 8.31 -40.82 -0.34 7.08 16 50 H 0.04 0.87 6.19 -51.92 -0.32 0.55 16 51 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 399.73 15.07 6.02 6.02 Total: -1.00 -34.81 399.73 -9.43 -44.25 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -8.25 Total: -0.75 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -1.83 Total: 6.28 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.49 Total: -60.90 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.14 Total: -13.12 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.81 -9.43 -44.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567688236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.207 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds