Wall clock time and date at job start Wed Apr 1 2020 05:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47243 * 2 1 4 4 N 1.46501 * 109.47203 * 174.37185 * 3 2 1 5 5 C 1.34773 * 120.00153 * 260.77491 * 4 3 2 6 6 O 1.21285 * 120.00175 * 180.55719 * 5 4 3 7 7 C 1.50699 * 119.99990 * 0.56439 * 5 4 3 8 8 H 1.08997 * 109.47538 * 318.67768 * 7 5 4 9 9 C 1.53009 * 109.47101 * 78.67350 * 7 5 4 10 10 O 1.42898 * 109.47449 * 198.67040 * 7 5 4 11 11 C 1.35678 * 117.00094 * 149.99829 * 10 7 5 12 12 C 1.38918 * 119.68608 * 179.73437 * 11 10 7 13 13 C 1.38378 * 119.11413 * 179.71092 * 12 11 10 14 14 C 1.38838 * 118.48075 * 0.54864 * 13 12 11 15 15 C 1.38047 * 119.28684 * 359.73355 * 14 13 12 16 16 N 1.31955 * 120.83930 * 359.97379 * 15 14 13 17 17 C 1.46501 * 120.00128 * 80.78194 * 4 3 2 18 18 H 1.09009 * 110.88432 * 2.42485 * 17 4 3 19 19 C 1.55396 * 111.07259 * 126.20653 * 17 4 3 20 20 C 1.54327 * 102.82723 * 153.49052 * 19 17 4 21 21 N 1.47024 * 107.40047 * 337.97469 * 20 19 17 22 22 C 1.36937 * 125.64459 * 178.90020 * 21 20 19 23 23 H 1.08006 * 119.99474 * 179.97438 * 22 21 20 24 24 C 1.38814 * 120.00331 * 359.97438 * 22 21 20 25 25 N 1.31614 * 119.99725 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99774 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47353 * 90.00083 * 26 24 22 28 28 H 1.48508 * 109.46600 * 210.00215 * 26 24 22 29 29 H 1.48502 * 109.47132 * 329.99441 * 26 24 22 30 30 C 1.47424 * 108.70146 * 358.86749 * 21 20 19 31 31 H 1.09001 * 109.47208 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46600 * 299.99598 * 1 2 3 33 33 H 1.08998 * 109.47407 * 59.99680 * 1 2 3 34 34 H 1.09002 * 109.47067 * 240.00642 * 2 1 3 35 35 H 1.08998 * 109.47407 * 120.00320 * 2 1 3 36 36 H 1.09000 * 109.46952 * 54.37468 * 3 2 1 37 37 H 1.09004 * 109.47466 * 294.37340 * 3 2 1 38 38 H 1.08998 * 109.46864 * 47.95237 * 9 7 5 39 39 H 1.08997 * 109.46767 * 167.94756 * 9 7 5 40 40 H 1.08995 * 109.47215 * 287.95271 * 9 7 5 41 41 H 1.08000 * 120.44340 * 0.02562 * 12 11 10 42 42 H 1.07993 * 120.75856 * 180.28553 * 13 12 11 43 43 H 1.07994 * 120.35282 * 179.70563 * 14 13 12 44 44 H 1.07999 * 119.57482 * 179.97438 * 15 14 13 45 45 H 1.09000 * 110.69773 * 35.20153 * 19 17 4 46 46 H 1.09002 * 110.85948 * 271.84759 * 19 17 4 47 47 H 1.09003 * 109.88110 * 218.48593 * 20 19 17 48 48 H 1.08999 * 109.88372 * 97.47452 * 20 19 17 49 49 H 0.97007 * 119.99527 * 179.97438 * 25 24 22 50 50 H 1.08998 * 110.36421 * 142.96710 * 30 21 20 51 51 H 1.08997 * 110.36327 * 265.28494 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4987 1.4447 0.1355 5 6 4.0635 1.6704 1.3381 6 8 5.2712 1.6822 1.4484 7 6 3.1943 1.9078 2.5461 8 1 2.3593 2.5525 2.2719 9 6 2.6582 0.5699 3.0597 10 8 3.9653 2.5372 3.5715 11 6 3.3036 3.3631 4.4206 12 6 3.9978 3.9997 5.4416 13 6 3.3123 4.8442 6.2971 14 6 1.9475 5.0138 6.1070 15 6 1.3211 4.3445 5.0749 16 7 2.0029 3.5501 4.2715 17 6 4.3436 1.2017 -1.0365 18 1 3.7373 1.0803 -1.9342 19 6 5.3845 2.3407 -1.2206 20 6 6.5349 1.6357 -1.9699 21 7 6.4111 0.1941 -1.7091 22 6 7.2299 -0.7811 -2.2127 23 1 7.0550 -1.8166 -1.9601 24 6 8.2846 -0.4390 -3.0478 25 7 8.4974 0.8227 -3.3560 26 14 9.4011 -1.7696 -3.7353 27 1 8.8576 -2.2514 -5.0305 28 1 10.7621 -1.2138 -3.9455 29 1 9.4713 -2.9012 -2.7761 30 6 5.2600 -0.0274 -0.8151 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5137 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 1.5967 1.9845 0.8353 37 1 1.7613 1.9264 -0.9361 38 1 3.4769 -0.1462 3.1311 39 1 2.2122 0.7111 4.0442 40 1 1.9039 0.1918 2.3698 41 1 5.0592 3.8417 5.5630 42 1 3.8264 5.3563 7.0970 43 1 1.3820 5.6621 6.7599 44 1 0.2596 4.4727 4.9230 45 1 5.7244 2.7120 -0.2538 46 1 4.9715 3.1503 -1.8224 47 1 7.4945 1.9981 -1.6010 48 1 6.4528 1.8274 -3.0398 49 1 9.2347 1.0618 -3.9393 50 1 4.7379 -0.9442 -1.0890 51 1 5.5892 -0.0731 0.2230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567688350.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:35 Heat of formation + Delta-G solvation = 7.528703 kcal Electronic energy + Delta-G solvation = -31779.876658 eV Core-core repulsion = 27681.356347 eV Total energy + Delta-G solvation = -4098.520311 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.04760 -40.11307 -38.13236 -36.56698 -36.06035 -33.06522 -32.77750 -32.32024 -31.54389 -30.22264 -28.99912 -27.38668 -26.17752 -24.99443 -24.33354 -23.74102 -22.90968 -21.92365 -20.92186 -19.96565 -18.75466 -18.66229 -17.33572 -16.87627 -16.54203 -16.20066 -15.99184 -15.74046 -15.05839 -14.77635 -14.70760 -14.52728 -14.33458 -13.85444 -13.66110 -13.54357 -13.32018 -13.19124 -12.97334 -12.56385 -12.33730 -12.23761 -12.21371 -12.17087 -11.90607 -11.78060 -11.64216 -11.40689 -11.24480 -10.82969 -10.80614 -10.71914 -10.56141 -10.24393 -10.19260 -10.01611 -9.88881 -9.80710 -9.57862 -9.03619 -8.71202 -8.53056 -8.30264 -6.68359 -5.59942 -2.92631 0.88586 0.99159 2.44909 2.77752 3.37246 3.46602 3.51310 3.52147 3.53969 4.00059 4.37163 4.56270 4.59556 4.65006 4.74074 4.81260 4.85157 4.88163 4.96977 4.97553 5.12049 5.28175 5.38551 5.45046 5.46092 5.48478 5.53801 5.57057 5.64852 5.66072 5.69331 5.83877 5.86634 5.90273 5.91338 5.93599 5.96938 6.14212 6.23277 6.30772 6.56487 6.65620 6.70740 6.81809 7.04044 7.23783 7.55491 7.60289 7.67920 7.79889 7.94945 8.36663 8.41311 9.33206 9.93675 10.60887 11.51718 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.002748 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.750166 B =10188.137451 C =11396.183855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.151 4.151 3 C 0.102 3.898 4 N -0.598 5.598 5 C 0.511 3.489 6 O -0.495 6.495 7 C 0.073 3.927 8 H 0.109 0.891 9 C -0.168 4.168 10 O -0.275 6.275 11 C 0.326 3.674 12 C -0.189 4.189 13 C -0.040 4.040 14 C -0.217 4.217 15 C 0.139 3.861 16 N -0.543 5.543 17 C 0.133 3.867 18 H 0.093 0.907 19 C -0.159 4.159 20 C 0.186 3.814 21 N -0.602 5.602 22 C -0.223 4.223 23 H 0.076 0.924 24 C -0.010 4.010 25 N -0.922 5.922 26 Si 0.911 3.089 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.131 3.869 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.136 0.864 44 H 0.159 0.841 45 H 0.080 0.920 46 H 0.054 0.946 47 H 0.042 0.958 48 H 0.044 0.956 49 H 0.251 0.749 50 H 0.032 0.968 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.240 7.363 16.986 28.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.190 4.190 3 C -0.021 4.021 4 N -0.332 5.332 5 C 0.296 3.704 6 O -0.368 6.368 7 C 0.013 3.987 8 H 0.126 0.874 9 C -0.226 4.226 10 O -0.181 6.181 11 C 0.147 3.853 12 C -0.209 4.209 13 C -0.066 4.066 14 C -0.238 4.238 15 C -0.017 4.017 16 N -0.267 5.267 17 C 0.030 3.970 18 H 0.111 0.889 19 C -0.198 4.198 20 C 0.060 3.940 21 N -0.328 5.328 22 C -0.351 4.351 23 H 0.094 0.906 24 C -0.206 4.206 25 N -0.570 5.570 26 Si 0.742 3.258 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 C 0.003 3.997 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.161 0.839 42 H 0.158 0.842 43 H 0.154 0.846 44 H 0.176 0.824 45 H 0.099 0.901 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.051 0.949 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -20.490 6.837 16.202 27.002 hybrid contribution 0.749 -0.225 0.162 0.799 sum -19.741 6.612 16.364 26.481 Atomic orbital electron populations 1.21712 0.95132 1.02005 1.01897 1.22148 0.96045 0.97170 1.03590 1.21796 0.79899 0.97228 1.03179 1.47863 1.06378 1.71019 1.07936 1.20056 0.88733 0.78138 0.83468 1.90786 1.13950 1.47790 1.84260 1.22212 0.93989 0.96107 0.86367 0.87351 1.22321 1.02198 0.95471 1.02585 1.86419 1.35533 1.56107 1.39993 1.19951 0.87869 0.88600 0.88868 1.21142 1.02246 1.01107 0.96441 1.21426 0.94089 0.94199 0.96865 1.21968 0.95682 1.04464 1.01671 1.22404 0.99613 0.90087 0.89547 1.67270 1.07456 1.21440 1.30565 1.22468 0.91170 0.97937 0.85441 0.88907 1.23348 0.97531 0.96842 1.02035 1.21041 0.93584 0.82479 0.96852 1.44323 1.30769 1.03072 1.54664 1.19042 1.06052 0.87597 1.22426 0.90579 1.24793 0.99004 0.96412 1.00424 1.69979 1.32089 1.14710 1.40228 0.86119 0.80158 0.80650 0.78848 1.21711 1.21723 1.20770 1.21793 0.88706 0.93704 0.95447 0.92419 0.92631 0.92486 0.90906 0.91011 0.90211 0.90232 0.91143 0.91126 0.89588 0.83852 0.84164 0.84644 0.82426 0.90133 0.92736 0.93982 0.93787 0.93873 0.94929 0.94497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.15 -1.44 5.69 -26.74 -0.15 -1.59 16 3 C 0.10 1.08 4.93 -4.04 -0.02 1.06 16 4 N -0.60 -9.06 2.57 -163.53 -0.42 -9.48 16 5 C 0.51 8.67 6.19 -10.99 -0.07 8.60 16 6 O -0.49 -10.84 12.65 -13.63 -0.17 -11.01 16 7 C 0.07 0.99 2.08 -27.88 -0.06 0.93 16 8 H 0.11 1.31 5.21 -51.93 -0.27 1.04 16 9 C -0.17 -1.89 9.29 37.16 0.35 -1.55 16 10 O -0.28 -4.17 9.36 -37.92 -0.36 -4.52 16 11 C 0.33 4.11 7.44 -17.12 -0.13 3.98 16 12 C -0.19 -1.97 10.04 -39.28 -0.39 -2.36 16 13 C -0.04 -0.31 10.17 -39.31 -0.40 -0.71 16 14 C -0.22 -1.48 10.11 -39.43 -0.40 -1.88 16 15 C 0.14 1.11 11.17 -17.57 -0.20 0.92 16 16 N -0.54 -5.98 8.65 -13.33 -0.12 -6.10 16 17 C 0.13 2.48 3.52 -65.65 -0.23 2.25 16 18 H 0.09 1.60 7.98 -51.92 -0.41 1.19 16 19 C -0.16 -3.37 6.31 -24.76 -0.16 -3.52 16 20 C 0.19 4.90 5.37 -3.06 -0.02 4.88 16 21 N -0.60 -16.53 3.39 -170.07 -0.58 -17.11 16 22 C -0.22 -6.56 10.28 -15.06 -0.15 -6.72 16 23 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 24 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 25 N -0.92 -28.38 10.31 55.49 0.57 -27.80 16 26 Si 0.91 23.04 29.55 -169.99 -5.02 18.01 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 30 C 0.13 2.97 6.63 -2.53 -0.02 2.96 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.72 5.70 -51.93 -0.30 0.42 16 36 H 0.08 0.72 5.62 -51.93 -0.29 0.43 16 37 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 38 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 40 H 0.09 0.80 4.62 -51.93 -0.24 0.56 16 41 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 44 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.08 1.84 5.71 -51.93 -0.30 1.54 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.04 1.25 7.51 -51.93 -0.39 0.86 16 48 H 0.04 1.24 7.37 -51.93 -0.38 0.86 16 49 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 50 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 51 H 0.04 0.92 6.10 -51.93 -0.32 0.60 16 LS Contribution 399.81 15.07 6.03 6.03 Total: -1.00 -36.15 399.81 -9.78 -45.92 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.94 Total: -0.08 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -1.77 Total: 6.13 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.54 Total: -60.49 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.53 Total: -15.53 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.15 -9.78 -45.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567688350.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.453 kcal (2) G-P(sol) polarization free energy of solvation -36.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds