Wall clock time and date at job start Wed Apr 1 2020 05:20:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52996 * 109.47243 * 2 1
4 4 N 1.46501 * 109.47203 * 174.37185 * 3 2 1
5 5 C 1.34773 * 120.00153 * 260.77491 * 4 3 2
6 6 O 1.21285 * 120.00175 * 180.55719 * 5 4 3
7 7 C 1.50699 * 119.99990 * 0.56439 * 5 4 3
8 8 H 1.08997 * 109.47538 * 318.67768 * 7 5 4
9 9 C 1.53009 * 109.47101 * 78.67350 * 7 5 4
10 10 O 1.42898 * 109.47449 * 198.67040 * 7 5 4
11 11 C 1.35678 * 117.00094 * 149.99829 * 10 7 5
12 12 C 1.38918 * 119.68608 * 179.73437 * 11 10 7
13 13 C 1.38378 * 119.11413 * 179.71092 * 12 11 10
14 14 C 1.38838 * 118.48075 * 0.54864 * 13 12 11
15 15 C 1.38047 * 119.28684 * 359.73355 * 14 13 12
16 16 N 1.31955 * 120.83930 * 359.97379 * 15 14 13
17 17 C 1.46501 * 120.00128 * 80.78194 * 4 3 2
18 18 H 1.09009 * 110.88432 * 2.42485 * 17 4 3
19 19 C 1.55396 * 111.07259 * 126.20653 * 17 4 3
20 20 C 1.54327 * 102.82723 * 153.49052 * 19 17 4
21 21 N 1.47024 * 107.40047 * 337.97469 * 20 19 17
22 22 C 1.36937 * 125.64459 * 178.90020 * 21 20 19
23 23 H 1.08006 * 119.99474 * 179.97438 * 22 21 20
24 24 C 1.38814 * 120.00331 * 359.97438 * 22 21 20
25 25 N 1.31614 * 119.99725 * 359.97438 * 24 22 21
26 26 Si 1.86798 * 119.99774 * 180.02562 * 24 22 21
27 27 H 1.48501 * 109.47353 * 90.00083 * 26 24 22
28 28 H 1.48508 * 109.46600 * 210.00215 * 26 24 22
29 29 H 1.48502 * 109.47132 * 329.99441 * 26 24 22
30 30 C 1.47424 * 108.70146 * 358.86749 * 21 20 19
31 31 H 1.09001 * 109.47208 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.46600 * 299.99598 * 1 2 3
33 33 H 1.08998 * 109.47407 * 59.99680 * 1 2 3
34 34 H 1.09002 * 109.47067 * 240.00642 * 2 1 3
35 35 H 1.08998 * 109.47407 * 120.00320 * 2 1 3
36 36 H 1.09000 * 109.46952 * 54.37468 * 3 2 1
37 37 H 1.09004 * 109.47466 * 294.37340 * 3 2 1
38 38 H 1.08998 * 109.46864 * 47.95237 * 9 7 5
39 39 H 1.08997 * 109.46767 * 167.94756 * 9 7 5
40 40 H 1.08995 * 109.47215 * 287.95271 * 9 7 5
41 41 H 1.08000 * 120.44340 * 0.02562 * 12 11 10
42 42 H 1.07993 * 120.75856 * 180.28553 * 13 12 11
43 43 H 1.07994 * 120.35282 * 179.70563 * 14 13 12
44 44 H 1.07999 * 119.57482 * 179.97438 * 15 14 13
45 45 H 1.09000 * 110.69773 * 35.20153 * 19 17 4
46 46 H 1.09002 * 110.85948 * 271.84759 * 19 17 4
47 47 H 1.09003 * 109.88110 * 218.48593 * 20 19 17
48 48 H 1.08999 * 109.88372 * 97.47452 * 20 19 17
49 49 H 0.97007 * 119.99527 * 179.97438 * 25 24 22
50 50 H 1.08998 * 110.36421 * 142.96710 * 30 21 20
51 51 H 1.08997 * 110.36327 * 265.28494 * 30 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.4987 1.4447 0.1355
5 6 4.0635 1.6704 1.3381
6 8 5.2712 1.6822 1.4484
7 6 3.1943 1.9078 2.5461
8 1 2.3593 2.5525 2.2719
9 6 2.6582 0.5699 3.0597
10 8 3.9653 2.5372 3.5715
11 6 3.3036 3.3631 4.4206
12 6 3.9978 3.9997 5.4416
13 6 3.3123 4.8442 6.2971
14 6 1.9475 5.0138 6.1070
15 6 1.3211 4.3445 5.0749
16 7 2.0029 3.5501 4.2715
17 6 4.3436 1.2017 -1.0365
18 1 3.7373 1.0803 -1.9342
19 6 5.3845 2.3407 -1.2206
20 6 6.5349 1.6357 -1.9699
21 7 6.4111 0.1941 -1.7091
22 6 7.2299 -0.7811 -2.2127
23 1 7.0550 -1.8166 -1.9601
24 6 8.2846 -0.4390 -3.0478
25 7 8.4974 0.8227 -3.3560
26 14 9.4011 -1.7696 -3.7353
27 1 8.8576 -2.2514 -5.0305
28 1 10.7621 -1.2138 -3.9455
29 1 9.4713 -2.9012 -2.7761
30 6 5.2600 -0.0274 -0.8151
31 1 -0.3634 -1.0277 0.0005
32 1 -0.3632 0.5138 0.8901
33 1 -0.3634 0.5139 -0.8899
34 1 1.8933 -0.5137 -0.8901
35 1 1.8933 -0.5139 0.8899
36 1 1.5967 1.9845 0.8353
37 1 1.7613 1.9264 -0.9361
38 1 3.4769 -0.1462 3.1311
39 1 2.2122 0.7111 4.0442
40 1 1.9039 0.1918 2.3698
41 1 5.0592 3.8417 5.5630
42 1 3.8264 5.3563 7.0970
43 1 1.3820 5.6621 6.7599
44 1 0.2596 4.4727 4.9230
45 1 5.7244 2.7120 -0.2538
46 1 4.9715 3.1503 -1.8224
47 1 7.4945 1.9981 -1.6010
48 1 6.4528 1.8274 -3.0398
49 1 9.2347 1.0618 -3.9393
50 1 4.7379 -0.9442 -1.0890
51 1 5.5892 -0.0731 0.2230
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001567688350.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:20:35
Heat of formation + Delta-G solvation = 7.528703 kcal
Electronic energy + Delta-G solvation = -31779.876658 eV
Core-core repulsion = 27681.356347 eV
Total energy + Delta-G solvation = -4098.520311 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.24 seconds
Orbital eigenvalues (eV)
-41.04760 -40.11307 -38.13236 -36.56698 -36.06035 -33.06522 -32.77750 -32.32024
-31.54389 -30.22264 -28.99912 -27.38668 -26.17752 -24.99443 -24.33354 -23.74102
-22.90968 -21.92365 -20.92186 -19.96565 -18.75466 -18.66229 -17.33572 -16.87627
-16.54203 -16.20066 -15.99184 -15.74046 -15.05839 -14.77635 -14.70760 -14.52728
-14.33458 -13.85444 -13.66110 -13.54357 -13.32018 -13.19124 -12.97334 -12.56385
-12.33730 -12.23761 -12.21371 -12.17087 -11.90607 -11.78060 -11.64216 -11.40689
-11.24480 -10.82969 -10.80614 -10.71914 -10.56141 -10.24393 -10.19260 -10.01611
-9.88881 -9.80710 -9.57862 -9.03619 -8.71202 -8.53056 -8.30264 -6.68359
-5.59942 -2.92631 0.88586 0.99159 2.44909 2.77752 3.37246 3.46602
3.51310 3.52147 3.53969 4.00059 4.37163 4.56270 4.59556 4.65006
4.74074 4.81260 4.85157 4.88163 4.96977 4.97553 5.12049 5.28175
5.38551 5.45046 5.46092 5.48478 5.53801 5.57057 5.64852 5.66072
5.69331 5.83877 5.86634 5.90273 5.91338 5.93599 5.96938 6.14212
6.23277 6.30772 6.56487 6.65620 6.70740 6.81809 7.04044 7.23783
7.55491 7.60289 7.67920 7.79889 7.94945 8.36663 8.41311 9.33206
9.93675 10.60887 11.51718
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014226 B = 0.002748 C = 0.002456
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1967.750166 B =10188.137451 C =11396.183855
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.151 4.151
3 C 0.102 3.898
4 N -0.598 5.598
5 C 0.511 3.489
6 O -0.495 6.495
7 C 0.073 3.927
8 H 0.109 0.891
9 C -0.168 4.168
10 O -0.275 6.275
11 C 0.326 3.674
12 C -0.189 4.189
13 C -0.040 4.040
14 C -0.217 4.217
15 C 0.139 3.861
16 N -0.543 5.543
17 C 0.133 3.867
18 H 0.093 0.907
19 C -0.159 4.159
20 C 0.186 3.814
21 N -0.602 5.602
22 C -0.223 4.223
23 H 0.076 0.924
24 C -0.010 4.010
25 N -0.922 5.922
26 Si 0.911 3.089
27 H -0.290 1.290
28 H -0.291 1.291
29 H -0.282 1.282
30 C 0.131 3.869
31 H 0.057 0.943
32 H 0.055 0.945
33 H 0.056 0.944
34 H 0.072 0.928
35 H 0.071 0.929
36 H 0.080 0.920
37 H 0.079 0.921
38 H 0.070 0.930
39 H 0.070 0.930
40 H 0.086 0.914
41 H 0.144 0.856
42 H 0.141 0.859
43 H 0.136 0.864
44 H 0.159 0.841
45 H 0.080 0.920
46 H 0.054 0.946
47 H 0.042 0.958
48 H 0.044 0.956
49 H 0.251 0.749
50 H 0.032 0.968
51 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.240 7.363 16.986 28.176
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.190 4.190
3 C -0.021 4.021
4 N -0.332 5.332
5 C 0.296 3.704
6 O -0.368 6.368
7 C 0.013 3.987
8 H 0.126 0.874
9 C -0.226 4.226
10 O -0.181 6.181
11 C 0.147 3.853
12 C -0.209 4.209
13 C -0.066 4.066
14 C -0.238 4.238
15 C -0.017 4.017
16 N -0.267 5.267
17 C 0.030 3.970
18 H 0.111 0.889
19 C -0.198 4.198
20 C 0.060 3.940
21 N -0.328 5.328
22 C -0.351 4.351
23 H 0.094 0.906
24 C -0.206 4.206
25 N -0.570 5.570
26 Si 0.742 3.258
27 H -0.217 1.217
28 H -0.217 1.217
29 H -0.208 1.208
30 C 0.003 3.997
31 H 0.076 0.924
32 H 0.074 0.926
33 H 0.075 0.925
34 H 0.091 0.909
35 H 0.090 0.910
36 H 0.098 0.902
37 H 0.098 0.902
38 H 0.089 0.911
39 H 0.089 0.911
40 H 0.104 0.896
41 H 0.161 0.839
42 H 0.158 0.842
43 H 0.154 0.846
44 H 0.176 0.824
45 H 0.099 0.901
46 H 0.073 0.927
47 H 0.060 0.940
48 H 0.062 0.938
49 H 0.061 0.939
50 H 0.051 0.949
51 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges -20.490 6.837 16.202 27.002
hybrid contribution 0.749 -0.225 0.162 0.799
sum -19.741 6.612 16.364 26.481
Atomic orbital electron populations
1.21712 0.95132 1.02005 1.01897 1.22148 0.96045 0.97170 1.03590
1.21796 0.79899 0.97228 1.03179 1.47863 1.06378 1.71019 1.07936
1.20056 0.88733 0.78138 0.83468 1.90786 1.13950 1.47790 1.84260
1.22212 0.93989 0.96107 0.86367 0.87351 1.22321 1.02198 0.95471
1.02585 1.86419 1.35533 1.56107 1.39993 1.19951 0.87869 0.88600
0.88868 1.21142 1.02246 1.01107 0.96441 1.21426 0.94089 0.94199
0.96865 1.21968 0.95682 1.04464 1.01671 1.22404 0.99613 0.90087
0.89547 1.67270 1.07456 1.21440 1.30565 1.22468 0.91170 0.97937
0.85441 0.88907 1.23348 0.97531 0.96842 1.02035 1.21041 0.93584
0.82479 0.96852 1.44323 1.30769 1.03072 1.54664 1.19042 1.06052
0.87597 1.22426 0.90579 1.24793 0.99004 0.96412 1.00424 1.69979
1.32089 1.14710 1.40228 0.86119 0.80158 0.80650 0.78848 1.21711
1.21723 1.20770 1.21793 0.88706 0.93704 0.95447 0.92419 0.92631
0.92486 0.90906 0.91011 0.90211 0.90232 0.91143 0.91126 0.89588
0.83852 0.84164 0.84644 0.82426 0.90133 0.92736 0.93982 0.93787
0.93873 0.94929 0.94497
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16
2 C -0.15 -1.44 5.69 -26.74 -0.15 -1.59 16
3 C 0.10 1.08 4.93 -4.04 -0.02 1.06 16
4 N -0.60 -9.06 2.57 -163.53 -0.42 -9.48 16
5 C 0.51 8.67 6.19 -10.99 -0.07 8.60 16
6 O -0.49 -10.84 12.65 -13.63 -0.17 -11.01 16
7 C 0.07 0.99 2.08 -27.88 -0.06 0.93 16
8 H 0.11 1.31 5.21 -51.93 -0.27 1.04 16
9 C -0.17 -1.89 9.29 37.16 0.35 -1.55 16
10 O -0.28 -4.17 9.36 -37.92 -0.36 -4.52 16
11 C 0.33 4.11 7.44 -17.12 -0.13 3.98 16
12 C -0.19 -1.97 10.04 -39.28 -0.39 -2.36 16
13 C -0.04 -0.31 10.17 -39.31 -0.40 -0.71 16
14 C -0.22 -1.48 10.11 -39.43 -0.40 -1.88 16
15 C 0.14 1.11 11.17 -17.57 -0.20 0.92 16
16 N -0.54 -5.98 8.65 -13.33 -0.12 -6.10 16
17 C 0.13 2.48 3.52 -65.65 -0.23 2.25 16
18 H 0.09 1.60 7.98 -51.92 -0.41 1.19 16
19 C -0.16 -3.37 6.31 -24.76 -0.16 -3.52 16
20 C 0.19 4.90 5.37 -3.06 -0.02 4.88 16
21 N -0.60 -16.53 3.39 -170.07 -0.58 -17.11 16
22 C -0.22 -6.56 10.28 -15.06 -0.15 -6.72 16
23 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16
24 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16
25 N -0.92 -28.38 10.31 55.49 0.57 -27.80 16
26 Si 0.91 23.04 29.55 -169.99 -5.02 18.01 16
27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16
29 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16
30 C 0.13 2.97 6.63 -2.53 -0.02 2.96 16
31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16
34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
35 H 0.07 0.72 5.70 -51.93 -0.30 0.42 16
36 H 0.08 0.72 5.62 -51.93 -0.29 0.43 16
37 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16
38 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16
39 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16
40 H 0.09 0.80 4.62 -51.93 -0.24 0.56 16
41 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16
42 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16
43 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16
44 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16
45 H 0.08 1.84 5.71 -51.93 -0.30 1.54 16
46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16
47 H 0.04 1.25 7.51 -51.93 -0.39 0.86 16
48 H 0.04 1.24 7.37 -51.93 -0.38 0.86 16
49 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16
50 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16
51 H 0.04 0.92 6.10 -51.93 -0.32 0.60 16
LS Contribution 399.81 15.07 6.03 6.03
Total: -1.00 -36.15 399.81 -9.78 -45.92
By element:
Atomic # 1 Polarization: 7.86 SS G_CDS: -7.94 Total: -0.08 kcal
Atomic # 6 Polarization: 7.90 SS G_CDS: -1.77 Total: 6.13 kcal
Atomic # 7 Polarization: -59.95 SS G_CDS: -0.54 Total: -60.49 kcal
Atomic # 8 Polarization: -15.00 SS G_CDS: -0.53 Total: -15.53 kcal
Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -36.15 -9.78 -45.92 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001567688350.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.453 kcal
(2) G-P(sol) polarization free energy of solvation -36.149 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.304 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.924 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.529 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.24 seconds