Wall clock time and date at job start Wed Apr 1 2020 05:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47243 * 2 1 4 4 N 1.46501 * 109.47203 * 174.37185 * 3 2 1 5 5 C 1.34773 * 120.00153 * 260.77491 * 4 3 2 6 6 O 1.21285 * 120.00175 * 180.55719 * 5 4 3 7 7 C 1.50699 * 119.99990 * 0.56439 * 5 4 3 8 8 H 1.08997 * 109.47538 * 318.67768 * 7 5 4 9 9 C 1.53009 * 109.47101 * 78.67350 * 7 5 4 10 10 O 1.42898 * 109.47449 * 198.67040 * 7 5 4 11 11 C 1.35678 * 117.00094 * 149.99829 * 10 7 5 12 12 C 1.38918 * 119.68608 * 179.73437 * 11 10 7 13 13 C 1.38378 * 119.11413 * 179.71092 * 12 11 10 14 14 C 1.38838 * 118.48075 * 0.54864 * 13 12 11 15 15 C 1.38047 * 119.28684 * 359.73355 * 14 13 12 16 16 N 1.31955 * 120.83930 * 359.97379 * 15 14 13 17 17 C 1.46501 * 120.00128 * 80.78194 * 4 3 2 18 18 H 1.09009 * 110.88432 * 2.42485 * 17 4 3 19 19 C 1.55396 * 111.07259 * 126.20653 * 17 4 3 20 20 C 1.54327 * 102.82723 * 153.49052 * 19 17 4 21 21 N 1.47024 * 107.40047 * 337.97469 * 20 19 17 22 22 C 1.36937 * 125.64459 * 178.90020 * 21 20 19 23 23 H 1.08006 * 119.99474 * 179.97438 * 22 21 20 24 24 C 1.38814 * 120.00331 * 359.97438 * 22 21 20 25 25 N 1.31614 * 119.99725 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99774 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47353 * 90.00083 * 26 24 22 28 28 H 1.48508 * 109.46600 * 210.00215 * 26 24 22 29 29 H 1.48502 * 109.47132 * 329.99441 * 26 24 22 30 30 C 1.47424 * 108.70146 * 358.86749 * 21 20 19 31 31 H 1.09001 * 109.47208 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46600 * 299.99598 * 1 2 3 33 33 H 1.08998 * 109.47407 * 59.99680 * 1 2 3 34 34 H 1.09002 * 109.47067 * 240.00642 * 2 1 3 35 35 H 1.08998 * 109.47407 * 120.00320 * 2 1 3 36 36 H 1.09000 * 109.46952 * 54.37468 * 3 2 1 37 37 H 1.09004 * 109.47466 * 294.37340 * 3 2 1 38 38 H 1.08998 * 109.46864 * 47.95237 * 9 7 5 39 39 H 1.08997 * 109.46767 * 167.94756 * 9 7 5 40 40 H 1.08995 * 109.47215 * 287.95271 * 9 7 5 41 41 H 1.08000 * 120.44340 * 0.02562 * 12 11 10 42 42 H 1.07993 * 120.75856 * 180.28553 * 13 12 11 43 43 H 1.07994 * 120.35282 * 179.70563 * 14 13 12 44 44 H 1.07999 * 119.57482 * 179.97438 * 15 14 13 45 45 H 1.09000 * 110.69773 * 35.20153 * 19 17 4 46 46 H 1.09002 * 110.85948 * 271.84759 * 19 17 4 47 47 H 1.09003 * 109.88110 * 218.48593 * 20 19 17 48 48 H 1.08999 * 109.88372 * 97.47452 * 20 19 17 49 49 H 0.97007 * 119.99527 * 179.97438 * 25 24 22 50 50 H 1.08998 * 110.36421 * 142.96710 * 30 21 20 51 51 H 1.08997 * 110.36327 * 265.28494 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4987 1.4447 0.1355 5 6 4.0635 1.6704 1.3381 6 8 5.2712 1.6822 1.4484 7 6 3.1943 1.9078 2.5461 8 1 2.3593 2.5525 2.2719 9 6 2.6582 0.5699 3.0597 10 8 3.9653 2.5372 3.5715 11 6 3.3036 3.3631 4.4206 12 6 3.9978 3.9997 5.4416 13 6 3.3123 4.8442 6.2971 14 6 1.9475 5.0138 6.1070 15 6 1.3211 4.3445 5.0749 16 7 2.0029 3.5501 4.2715 17 6 4.3436 1.2017 -1.0365 18 1 3.7373 1.0803 -1.9342 19 6 5.3845 2.3407 -1.2206 20 6 6.5349 1.6357 -1.9699 21 7 6.4111 0.1941 -1.7091 22 6 7.2299 -0.7811 -2.2127 23 1 7.0550 -1.8166 -1.9601 24 6 8.2846 -0.4390 -3.0478 25 7 8.4974 0.8227 -3.3560 26 14 9.4011 -1.7696 -3.7353 27 1 8.8576 -2.2514 -5.0305 28 1 10.7621 -1.2138 -3.9455 29 1 9.4713 -2.9012 -2.7761 30 6 5.2600 -0.0274 -0.8151 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5137 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 1.5967 1.9845 0.8353 37 1 1.7613 1.9264 -0.9361 38 1 3.4769 -0.1462 3.1311 39 1 2.2122 0.7111 4.0442 40 1 1.9039 0.1918 2.3698 41 1 5.0592 3.8417 5.5630 42 1 3.8264 5.3563 7.0970 43 1 1.3820 5.6621 6.7599 44 1 0.2596 4.4727 4.9230 45 1 5.7244 2.7120 -0.2538 46 1 4.9715 3.1503 -1.8224 47 1 7.4945 1.9981 -1.6010 48 1 6.4528 1.8274 -3.0398 49 1 9.2347 1.0618 -3.9393 50 1 4.7379 -0.9442 -1.0890 51 1 5.5892 -0.0731 0.2230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567688350.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:33 Heat of formation + Delta-G solvation = -16.124404 kcal Electronic energy + Delta-G solvation = -31780.902334 eV Core-core repulsion = 27681.356347 eV Total energy + Delta-G solvation = -4099.545987 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.04007 -41.20971 -39.22502 -38.21153 -37.28448 -34.70600 -33.48989 -33.36162 -32.97116 -31.11864 -30.83720 -29.13362 -27.10323 -26.68064 -25.60443 -24.49909 -23.92051 -22.82234 -22.25419 -22.02367 -20.01413 -19.57412 -18.95552 -18.37571 -17.52478 -17.17159 -16.94206 -16.75707 -16.69985 -16.25547 -15.79983 -15.70613 -15.47931 -15.40962 -14.68693 -14.55428 -14.38274 -14.28203 -14.17061 -13.97255 -13.77364 -13.68875 -13.42879 -13.03877 -12.95855 -12.94260 -12.78835 -12.77723 -12.70464 -12.38912 -12.25207 -12.06875 -12.03772 -11.94454 -11.83070 -11.63845 -11.42569 -10.89070 -10.73901 -10.60709 -10.43735 -9.71799 -9.47893 -8.90685 -7.86549 -5.23351 0.22054 0.33621 1.37083 1.42247 1.46216 1.49569 1.55151 2.31311 2.49337 2.84279 3.24834 3.29182 3.32906 3.67626 3.77402 3.83815 3.87815 3.98118 4.05071 4.06899 4.13442 4.18072 4.20553 4.24340 4.34053 4.39884 4.55377 4.60085 4.64106 4.65988 4.71768 4.74088 4.82390 4.88432 4.94617 4.96943 5.03134 5.05766 5.09440 5.29060 5.31079 5.31889 5.39807 5.52160 5.57042 5.61136 5.64581 5.72176 6.15994 6.18249 6.38013 6.86606 7.06323 7.11418 7.73333 8.39632 9.24118 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.002748 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.750166 B =10188.137451 C =11396.183855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.148 4.148 3 C 0.096 3.904 4 N -0.590 5.590 5 C 0.505 3.495 6 O -0.556 6.556 7 C 0.084 3.916 8 H 0.127 0.873 9 C -0.159 4.159 10 O -0.310 6.310 11 C 0.292 3.708 12 C -0.211 4.211 13 C -0.037 4.037 14 C -0.204 4.204 15 C 0.130 3.870 16 N -0.555 5.555 17 C 0.154 3.846 18 H 0.119 0.881 19 C -0.145 4.145 20 C 0.197 3.803 21 N -0.622 5.622 22 C -0.245 4.245 23 H 0.081 0.919 24 C -0.069 4.069 25 N -0.953 5.953 26 Si 0.985 3.015 27 H -0.278 1.278 28 H -0.294 1.294 29 H -0.271 1.271 30 C 0.130 3.870 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.048 0.952 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.135 0.865 42 H 0.170 0.830 43 H 0.173 0.827 44 H 0.192 0.808 45 H 0.062 0.938 46 H 0.083 0.917 47 H -0.007 1.007 48 H 0.021 0.979 49 H 0.247 0.753 50 H 0.045 0.955 51 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.098 7.822 18.099 31.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.187 4.187 3 C -0.025 4.025 4 N -0.323 5.323 5 C 0.292 3.708 6 O -0.433 6.433 7 C 0.025 3.975 8 H 0.145 0.855 9 C -0.216 4.216 10 O -0.217 6.217 11 C 0.115 3.885 12 C -0.231 4.231 13 C -0.062 4.062 14 C -0.223 4.223 15 C -0.025 4.025 16 N -0.279 5.279 17 C 0.049 3.951 18 H 0.137 0.863 19 C -0.184 4.184 20 C 0.071 3.929 21 N -0.349 5.349 22 C -0.373 4.373 23 H 0.099 0.901 24 C -0.261 4.261 25 N -0.602 5.602 26 Si 0.812 3.188 27 H -0.205 1.205 28 H -0.220 1.220 29 H -0.196 1.196 30 C 0.004 3.996 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.127 0.873 41 H 0.153 0.847 42 H 0.188 0.812 43 H 0.190 0.810 44 H 0.209 0.791 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.011 0.989 48 H 0.040 0.960 49 H 0.057 0.943 50 H 0.063 0.937 51 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -24.435 7.289 17.338 30.835 hybrid contribution 1.889 -0.286 -0.046 1.911 sum -22.546 7.003 17.291 29.263 Atomic orbital electron populations 1.21676 0.92838 1.02628 1.03020 1.22107 0.97912 0.95990 1.02650 1.22187 0.76530 0.98569 1.05216 1.47879 1.08138 1.69911 1.06332 1.20826 0.88428 0.76758 0.84778 1.90761 1.16747 1.50512 1.85298 1.22151 0.93050 0.97410 0.84934 0.85532 1.22284 1.01853 0.93783 1.03665 1.86370 1.37163 1.57309 1.40851 1.20165 0.88934 0.89781 0.89625 1.21333 1.02329 1.02312 0.97174 1.21836 0.94760 0.93040 0.96595 1.22425 0.95348 1.03469 1.01103 1.23096 1.01038 0.89182 0.89200 1.67230 1.06684 1.22388 1.31595 1.22110 0.90934 0.94274 0.87749 0.86313 1.23135 0.96600 0.97969 1.00718 1.20742 0.93470 0.82840 0.95806 1.44638 1.32034 1.03155 1.55055 1.19463 1.06877 0.88399 1.22593 0.90092 1.25742 1.00574 0.98838 1.00985 1.70217 1.32451 1.16782 1.40707 0.84995 0.77487 0.77909 0.78411 1.20458 1.22044 1.19614 1.21854 0.88256 0.96343 0.93167 0.92106 0.91200 0.91686 0.92263 0.91671 0.88005 0.88271 0.93270 0.90113 0.87319 0.84659 0.81225 0.80981 0.79088 0.91945 0.89822 0.98916 0.96046 0.94338 0.93705 0.96885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.15 -2.45 5.69 30.59 0.17 -2.28 16 3 C 0.10 1.76 4.93 86.38 0.43 2.18 16 4 N -0.59 -17.44 2.57 -789.67 -2.03 -19.47 16 5 C 0.50 17.52 6.19 87.66 0.54 18.06 16 6 O -0.56 -25.93 12.65 15.29 0.19 -25.74 16 7 C 0.08 2.27 2.08 29.85 0.06 2.33 16 8 H 0.13 2.85 5.21 -2.39 -0.01 2.84 16 9 C -0.16 -3.47 9.29 71.99 0.67 -2.80 16 10 O -0.31 -9.80 9.36 -71.62 -0.67 -10.47 16 11 C 0.29 7.39 7.44 84.79 0.63 8.02 16 12 C -0.21 -4.42 10.04 22.47 0.23 -4.19 16 13 C -0.04 -0.48 10.17 22.45 0.23 -0.25 16 14 C -0.20 -2.01 10.11 22.37 0.23 -1.79 16 15 C 0.13 1.65 11.17 84.63 0.95 2.60 16 16 N -0.55 -11.24 8.65 -308.95 -2.67 -13.92 16 17 C 0.15 5.71 3.52 46.47 0.16 5.87 16 18 H 0.12 3.86 7.98 -2.38 -0.02 3.84 16 19 C -0.15 -6.34 6.31 31.87 0.20 -6.14 16 20 C 0.20 10.98 5.37 86.73 0.47 11.45 16 21 N -0.62 -35.63 3.39 -691.98 -2.35 -37.98 16 22 C -0.24 -14.86 10.28 84.03 0.86 -14.00 16 23 H 0.08 4.70 7.83 -2.91 -0.02 4.67 16 24 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 25 N -0.95 -61.13 10.31 21.65 0.22 -60.90 16 26 Si 0.98 48.41 29.55 68.60 2.03 50.43 16 27 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 28 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 29 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 30 C 0.13 6.10 6.63 86.85 0.58 6.67 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.17 5.70 -2.39 -0.01 1.15 16 36 H 0.10 1.47 5.62 -2.39 -0.01 1.45 16 37 H 0.10 1.51 8.12 -2.39 -0.02 1.49 16 38 H 0.05 1.28 8.08 -2.39 -0.02 1.26 16 39 H 0.08 1.61 8.13 -2.39 -0.02 1.59 16 40 H 0.11 1.80 4.62 -2.39 -0.01 1.79 16 41 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 43 H 0.17 0.45 8.06 -2.91 -0.02 0.42 16 44 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 45 H 0.06 3.00 5.71 -2.39 -0.01 2.98 16 46 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 47 H -0.01 -0.48 7.51 -2.39 -0.02 -0.50 16 48 H 0.02 1.27 7.37 -2.39 -0.02 1.25 16 49 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 50 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 51 H 0.01 0.69 6.10 -2.39 -0.01 0.68 16 Total: -1.00 -85.94 399.81 3.23 -82.71 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.93 Total: 14.15 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: 7.58 Total: 21.18 kcal Atomic # 7 Polarization: -125.44 SS G_CDS: -6.83 Total: -132.27 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -0.48 Total: -36.21 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.43 kcal Total: -85.94 3.23 -82.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567688350.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.588 kcal (2) G-P(sol) polarization free energy of solvation -85.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds