Wall clock time and date at job start Wed Apr 1 2020 05:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47226 * 2 1 4 4 N 1.46497 * 109.47357 * 180.02562 * 3 2 1 5 5 C 1.34780 * 120.00362 * 89.99867 * 4 3 2 6 6 O 1.21275 * 120.00004 * 179.97438 * 5 4 3 7 7 C 1.50699 * 119.99632 * 0.02562 * 5 4 3 8 8 O 1.42897 * 109.46850 * 180.02562 * 7 5 4 9 9 C 1.42901 * 113.99937 * 179.97438 * 8 7 5 10 10 C 1.50704 * 109.47226 * 179.97438 * 9 8 7 11 11 C 1.38675 * 120.41697 * 89.99883 * 10 9 8 12 12 C 1.38628 * 118.42013 * 180.02562 * 11 10 9 13 13 C 1.38220 * 119.16326 * 359.97438 * 12 11 10 14 14 N 1.31857 * 120.76198 * 0.02562 * 13 12 11 15 15 C 1.31883 * 121.72627 * 359.97438 * 14 13 12 16 16 C 1.46504 * 119.99742 * 269.99741 * 4 3 2 17 17 H 1.08996 * 110.64321 * 1.68881 * 16 4 3 18 18 C 1.55158 * 110.71651 * 125.02395 * 16 4 3 19 19 C 1.54913 * 101.57869 * 153.86597 * 18 16 4 20 20 N 1.47426 * 104.83286 * 322.98999 * 19 18 16 21 21 C 1.36938 * 125.64718 * 204.09727 * 20 19 18 22 22 H 1.08000 * 119.99449 * 180.02562 * 21 20 19 23 23 C 1.38806 * 119.99989 * 0.03556 * 21 20 19 24 24 N 1.31614 * 120.00215 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99922 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47117 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46876 * 119.99919 * 25 23 21 28 28 H 1.48492 * 109.47348 * 240.00331 * 25 23 21 29 29 C 1.47019 * 108.70311 * 24.12812 * 20 19 18 30 30 H 1.08993 * 109.47022 * 299.99867 * 1 2 3 31 31 H 1.09000 * 109.47352 * 60.00413 * 1 2 3 32 32 H 1.09004 * 109.46634 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47075 * 239.99821 * 2 1 3 34 34 H 1.09002 * 109.47515 * 120.00101 * 2 1 3 35 35 H 1.08998 * 109.47167 * 59.99403 * 3 2 1 36 36 H 1.09007 * 109.47238 * 300.00084 * 3 2 1 37 37 H 1.09004 * 109.47665 * 60.00052 * 7 5 4 38 38 H 1.08997 * 109.47375 * 299.99943 * 7 5 4 39 39 H 1.09001 * 109.47555 * 59.99855 * 9 8 7 40 40 H 1.09000 * 109.47378 * 299.99870 * 9 8 7 41 41 H 1.07998 * 120.78542 * 359.75048 * 11 10 9 42 42 H 1.07996 * 120.41751 * 179.97438 * 12 11 10 43 43 H 1.07997 * 119.62169 * 180.02562 * 13 12 11 44 44 H 1.08007 * 119.61759 * 180.02562 * 15 14 13 45 45 H 1.08997 * 111.00367 * 271.93679 * 18 16 4 46 46 H 1.08998 * 111.00863 * 35.79458 * 18 16 4 47 47 H 1.09000 * 110.36601 * 204.15604 * 19 18 16 48 48 H 1.09002 * 110.36897 * 81.83004 * 19 18 16 49 49 H 0.97003 * 120.00085 * 179.97438 * 24 23 21 50 50 H 1.09004 * 109.88628 * 239.52767 * 29 20 19 51 51 H 1.09001 * 109.88353 * 118.36021 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1785 1.4427 -1.1681 6 8 5.3912 1.4432 -1.1685 7 6 3.4244 1.4434 -2.4729 8 8 4.3526 1.4428 -3.5593 9 6 3.7375 1.4429 -4.8492 10 6 4.8038 1.4429 -5.9142 11 6 5.3006 0.2470 -6.4104 12 6 6.2812 0.2954 -7.3891 13 6 6.7277 1.5251 -7.8350 14 7 6.2323 2.6424 -7.3403 15 6 5.2988 2.6344 -6.4086 16 6 4.2380 1.4424 1.2679 17 1 3.5475 1.4122 2.1107 18 6 5.2338 0.2540 1.3262 19 6 6.3054 0.7940 2.3059 20 7 6.4179 2.2293 1.9884 21 6 7.5098 3.0180 2.2350 22 1 7.4931 4.0633 1.9639 23 6 8.6381 2.4740 2.8332 24 7 8.6586 1.2000 3.1628 25 14 10.1274 3.5501 3.1702 26 1 9.8521 4.9347 2.7093 27 1 10.4102 3.5613 4.6280 28 1 11.3033 3.0101 2.4418 29 6 5.1633 2.6737 1.3639 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6767 1.9564 -0.8900 37 1 2.7980 2.3336 -2.5301 38 1 2.7974 0.5537 -2.5307 39 1 3.1177 2.3331 -4.9562 40 1 3.1170 0.5531 -4.9559 41 1 4.9354 -0.6994 -6.0399 42 1 6.6911 -0.6163 -7.7979 43 1 7.4911 1.5714 -8.5975 44 1 4.9169 3.5701 -6.0277 45 1 4.7534 -0.6390 1.7262 46 1 5.6654 0.0572 0.3449 47 1 7.2588 0.2928 2.1391 48 1 5.9796 0.6580 3.3372 49 1 9.4472 0.8197 3.5805 50 1 5.3640 3.0652 0.3666 51 1 4.6950 3.4423 1.9788 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567689453.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:21 Heat of formation + Delta-G solvation = -3.745116 kcal Electronic energy + Delta-G solvation = -30930.042881 eV Core-core repulsion = 26831.033701 eV Total energy + Delta-G solvation = -4099.009180 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.44843 -40.10032 -37.95066 -36.49204 -35.96188 -33.20432 -32.99954 -32.01909 -31.76513 -29.35791 -28.45484 -27.16640 -26.32401 -25.62723 -24.17220 -23.81206 -22.27357 -22.02332 -20.95926 -20.03965 -18.63760 -17.46288 -17.10767 -17.00393 -16.87664 -16.70150 -15.91898 -15.62657 -15.47540 -14.77573 -14.53673 -14.43916 -14.33582 -13.96064 -13.87331 -13.57378 -13.43449 -13.29677 -13.01602 -12.61433 -12.50600 -12.34694 -12.30641 -11.96816 -11.72578 -11.54750 -11.49745 -11.35908 -10.95245 -10.90554 -10.76962 -10.68260 -10.40604 -10.07947 -9.98024 -9.95973 -9.71763 -9.65917 -9.45041 -9.33262 -8.99379 -8.51924 -8.28989 -6.66226 -5.50841 -2.90916 0.78182 1.04419 2.80311 2.87688 3.48161 3.49544 3.54816 3.57496 3.89905 4.22551 4.45111 4.49110 4.61579 4.63413 4.67462 4.70303 4.75012 4.78371 4.92968 4.98786 5.03793 5.08251 5.13389 5.21140 5.36458 5.39696 5.46795 5.48338 5.51675 5.62677 5.67216 5.77644 5.82393 5.84483 5.86311 5.96013 5.98084 6.06424 6.33083 6.43223 6.60639 6.62894 6.71096 6.82079 6.86392 7.25478 7.58447 7.70069 7.73356 7.77685 8.00207 8.49704 8.53644 9.36586 9.97858 10.62755 11.53333 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007450 B = 0.003173 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3757.427723 B = 8822.846919 C =11832.293111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.107 3.893 4 N -0.606 5.606 5 C 0.505 3.495 6 O -0.482 6.482 7 C 0.045 3.955 8 O -0.354 6.354 9 C 0.106 3.894 10 C -0.141 4.141 11 C -0.052 4.052 12 C -0.176 4.176 13 C 0.103 3.897 14 N -0.487 5.487 15 C 0.123 3.877 16 C 0.138 3.862 17 H 0.089 0.911 18 C -0.156 4.156 19 C 0.158 3.842 20 N -0.596 5.596 21 C -0.212 4.212 22 H 0.076 0.924 23 C -0.014 4.014 24 N -0.924 5.924 25 Si 0.913 3.087 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.133 3.867 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.051 0.949 46 H 0.082 0.918 47 H 0.106 0.894 48 H 0.009 0.991 49 H 0.249 0.751 50 H 0.036 0.964 51 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.484 -4.353 -17.532 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.016 4.016 4 N -0.341 5.341 5 C 0.290 3.710 6 O -0.353 6.353 7 C -0.035 4.035 8 O -0.272 6.272 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.078 4.078 12 C -0.196 4.196 13 C -0.054 4.054 14 N -0.196 5.196 15 C -0.034 4.034 16 C 0.035 3.965 17 H 0.107 0.893 18 C -0.196 4.196 19 C 0.033 3.967 20 N -0.322 5.322 21 C -0.341 4.341 22 H 0.093 0.907 23 C -0.209 4.209 24 N -0.573 5.573 25 Si 0.744 3.256 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.218 1.218 29 C 0.006 3.994 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.174 0.826 44 H 0.174 0.826 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.124 0.876 48 H 0.027 0.973 49 H 0.060 0.940 50 H 0.054 0.946 51 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -18.064 -3.528 -17.747 25.567 hybrid contribution -0.032 -0.366 0.571 0.679 sum -18.096 -3.895 -17.176 25.251 Atomic orbital electron populations 1.21708 0.95200 1.01933 1.01888 1.22016 0.95907 0.97385 1.03098 1.21681 0.80038 0.96759 1.03171 1.47938 1.05894 1.74427 1.05886 1.20043 0.88385 0.78212 0.84364 1.90861 1.13052 1.44998 1.86412 1.22358 0.92163 1.01983 0.86978 1.88148 1.31493 1.95349 1.12193 1.21239 0.92734 1.01281 0.81864 1.20564 1.00465 0.94740 0.98543 1.21533 0.94140 0.98224 0.93945 1.22159 0.98691 0.99825 0.98950 1.22844 0.97227 0.87826 0.97508 1.67743 1.09890 1.31446 1.10485 1.22717 0.91491 0.97565 0.91635 1.22204 0.93215 0.98204 0.82892 0.89328 1.23443 0.97747 0.95327 1.03038 1.21838 0.97875 0.84699 0.92298 1.44296 1.11083 1.06582 1.70210 1.19106 0.90902 0.91959 1.32106 0.90651 1.24753 0.98223 0.96376 1.01536 1.69808 1.28574 1.10956 1.47979 0.86005 0.82958 0.79274 0.77350 1.20606 1.21903 1.21817 1.21488 0.87746 0.93392 0.96818 0.92436 0.92726 0.92515 0.91911 0.91068 0.90015 0.90850 0.90591 0.90629 0.91869 0.92084 0.84659 0.84540 0.82634 0.82620 0.93011 0.89944 0.87582 0.97308 0.93976 0.94641 0.96634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.15 -1.19 6.26 -26.73 -0.17 -1.36 16 3 C 0.11 1.00 5.19 -4.04 -0.02 0.98 16 4 N -0.61 -8.82 2.54 -164.03 -0.42 -9.24 16 5 C 0.50 8.36 6.85 -10.98 -0.08 8.28 16 6 O -0.48 -10.92 12.85 -14.35 -0.18 -11.11 16 7 C 0.05 0.52 4.97 36.01 0.18 0.70 16 8 O -0.35 -4.90 9.86 -55.14 -0.54 -5.44 16 9 C 0.11 0.99 6.09 36.01 0.22 1.20 16 10 C -0.14 -1.50 5.53 -104.48 -0.58 -2.08 16 11 C -0.05 -0.51 9.86 -39.28 -0.39 -0.89 16 12 C -0.18 -1.57 10.11 -39.44 -0.40 -1.97 16 13 C 0.10 1.02 11.18 -17.55 -0.20 0.83 16 14 N -0.49 -5.99 10.36 -13.25 -0.14 -6.13 16 15 C 0.12 1.41 10.86 -17.55 -0.19 1.22 16 16 C 0.14 2.51 3.44 -66.09 -0.23 2.28 16 17 H 0.09 1.42 7.88 -51.93 -0.41 1.01 16 18 C -0.16 -3.28 6.40 -24.58 -0.16 -3.43 16 19 C 0.16 4.13 5.89 -2.53 -0.01 4.11 16 20 N -0.60 -16.54 3.39 -170.07 -0.58 -17.11 16 21 C -0.21 -6.37 10.27 -15.06 -0.15 -6.53 16 22 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 23 C -0.01 -0.42 5.49 -17.43 -0.10 -0.52 16 24 N -0.92 -28.46 10.09 55.49 0.56 -27.90 16 25 Si 0.91 23.46 29.55 -169.99 -5.02 18.44 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 29 C 0.13 3.04 6.49 -3.07 -0.02 3.02 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.52 7.22 -51.93 -0.38 0.15 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.70 7.96 -51.93 -0.41 0.29 16 36 H 0.07 0.52 6.44 -51.92 -0.33 0.19 16 37 H 0.08 0.66 7.40 -51.93 -0.38 0.28 16 38 H 0.08 0.66 7.19 -51.93 -0.37 0.28 16 39 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 40 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 41 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 42 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.16 1.50 8.06 -52.48 -0.42 1.08 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.08 1.92 5.81 -51.93 -0.30 1.62 16 47 H 0.11 3.15 5.87 -51.93 -0.30 2.85 16 48 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.04 0.88 6.28 -51.93 -0.33 0.56 16 51 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 408.37 15.07 6.15 6.15 Total: -1.00 -38.35 408.37 -10.35 -48.69 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -8.26 Total: -1.66 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -1.92 Total: 5.30 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.57 Total: -60.38 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.73 Total: -16.55 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.02 Total: 18.44 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.35 -10.35 -48.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567689453.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.948 kcal (2) G-P(sol) polarization free energy of solvation -38.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds