Wall clock time and date at job start Wed Apr 1 2020 05:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47226 * 2 1 4 4 N 1.46497 * 109.47357 * 180.02562 * 3 2 1 5 5 C 1.34780 * 120.00362 * 89.99867 * 4 3 2 6 6 O 1.21275 * 120.00004 * 179.97438 * 5 4 3 7 7 C 1.50699 * 119.99632 * 0.02562 * 5 4 3 8 8 O 1.42897 * 109.46850 * 180.02562 * 7 5 4 9 9 C 1.42901 * 113.99937 * 179.97438 * 8 7 5 10 10 C 1.50704 * 109.47226 * 179.97438 * 9 8 7 11 11 C 1.38675 * 120.41697 * 89.99883 * 10 9 8 12 12 C 1.38628 * 118.42013 * 180.02562 * 11 10 9 13 13 C 1.38220 * 119.16326 * 359.97438 * 12 11 10 14 14 N 1.31857 * 120.76198 * 0.02562 * 13 12 11 15 15 C 1.31883 * 121.72627 * 359.97438 * 14 13 12 16 16 C 1.46504 * 119.99742 * 269.99741 * 4 3 2 17 17 H 1.08996 * 110.64321 * 1.68881 * 16 4 3 18 18 C 1.55158 * 110.71651 * 125.02395 * 16 4 3 19 19 C 1.54913 * 101.57869 * 153.86597 * 18 16 4 20 20 N 1.47426 * 104.83286 * 322.98999 * 19 18 16 21 21 C 1.36938 * 125.64718 * 204.09727 * 20 19 18 22 22 H 1.08000 * 119.99449 * 180.02562 * 21 20 19 23 23 C 1.38806 * 119.99989 * 0.03556 * 21 20 19 24 24 N 1.31614 * 120.00215 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99922 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47117 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46876 * 119.99919 * 25 23 21 28 28 H 1.48492 * 109.47348 * 240.00331 * 25 23 21 29 29 C 1.47019 * 108.70311 * 24.12812 * 20 19 18 30 30 H 1.08993 * 109.47022 * 299.99867 * 1 2 3 31 31 H 1.09000 * 109.47352 * 60.00413 * 1 2 3 32 32 H 1.09004 * 109.46634 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47075 * 239.99821 * 2 1 3 34 34 H 1.09002 * 109.47515 * 120.00101 * 2 1 3 35 35 H 1.08998 * 109.47167 * 59.99403 * 3 2 1 36 36 H 1.09007 * 109.47238 * 300.00084 * 3 2 1 37 37 H 1.09004 * 109.47665 * 60.00052 * 7 5 4 38 38 H 1.08997 * 109.47375 * 299.99943 * 7 5 4 39 39 H 1.09001 * 109.47555 * 59.99855 * 9 8 7 40 40 H 1.09000 * 109.47378 * 299.99870 * 9 8 7 41 41 H 1.07998 * 120.78542 * 359.75048 * 11 10 9 42 42 H 1.07996 * 120.41751 * 179.97438 * 12 11 10 43 43 H 1.07997 * 119.62169 * 180.02562 * 13 12 11 44 44 H 1.08007 * 119.61759 * 180.02562 * 15 14 13 45 45 H 1.08997 * 111.00367 * 271.93679 * 18 16 4 46 46 H 1.08998 * 111.00863 * 35.79458 * 18 16 4 47 47 H 1.09000 * 110.36601 * 204.15604 * 19 18 16 48 48 H 1.09002 * 110.36897 * 81.83004 * 19 18 16 49 49 H 0.97003 * 120.00085 * 179.97438 * 24 23 21 50 50 H 1.09004 * 109.88628 * 239.52767 * 29 20 19 51 51 H 1.09001 * 109.88353 * 118.36021 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1785 1.4427 -1.1681 6 8 5.3912 1.4432 -1.1685 7 6 3.4244 1.4434 -2.4729 8 8 4.3526 1.4428 -3.5593 9 6 3.7375 1.4429 -4.8492 10 6 4.8038 1.4429 -5.9142 11 6 5.3006 0.2470 -6.4104 12 6 6.2812 0.2954 -7.3891 13 6 6.7277 1.5251 -7.8350 14 7 6.2323 2.6424 -7.3403 15 6 5.2988 2.6344 -6.4086 16 6 4.2380 1.4424 1.2679 17 1 3.5475 1.4122 2.1107 18 6 5.2338 0.2540 1.3262 19 6 6.3054 0.7940 2.3059 20 7 6.4179 2.2293 1.9884 21 6 7.5098 3.0180 2.2350 22 1 7.4931 4.0633 1.9639 23 6 8.6381 2.4740 2.8332 24 7 8.6586 1.2000 3.1628 25 14 10.1274 3.5501 3.1702 26 1 9.8521 4.9347 2.7093 27 1 10.4102 3.5613 4.6280 28 1 11.3033 3.0101 2.4418 29 6 5.1633 2.6737 1.3639 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6767 1.9564 -0.8900 37 1 2.7980 2.3336 -2.5301 38 1 2.7974 0.5537 -2.5307 39 1 3.1177 2.3331 -4.9562 40 1 3.1170 0.5531 -4.9559 41 1 4.9354 -0.6994 -6.0399 42 1 6.6911 -0.6163 -7.7979 43 1 7.4911 1.5714 -8.5975 44 1 4.9169 3.5701 -6.0277 45 1 4.7534 -0.6390 1.7262 46 1 5.6654 0.0572 0.3449 47 1 7.2588 0.2928 2.1391 48 1 5.9796 0.6580 3.3372 49 1 9.4472 0.8197 3.5805 50 1 5.3640 3.0652 0.3666 51 1 4.6950 3.4423 1.9788 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567689453.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:20 Heat of formation + Delta-G solvation = -28.979641 kcal Electronic energy + Delta-G solvation = -30931.137132 eV Core-core repulsion = 26831.033701 eV Total energy + Delta-G solvation = -4100.103432 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.45681 -41.10025 -39.04368 -38.05831 -37.08925 -34.61728 -33.92047 -33.24947 -32.71433 -31.18727 -29.85200 -28.50981 -27.08208 -26.89549 -25.94472 -24.55659 -23.00045 -22.89964 -22.33641 -21.98039 -19.89124 -18.97915 -18.27741 -18.02925 -17.88173 -17.66281 -16.91690 -16.81377 -16.50215 -16.45209 -15.79348 -15.56899 -15.43408 -15.32114 -14.83864 -14.74833 -14.45180 -14.20471 -14.05555 -13.99036 -13.75638 -13.47542 -13.25569 -13.22403 -13.00234 -12.92554 -12.75689 -12.64520 -12.44149 -12.28900 -12.18434 -12.00705 -11.97596 -11.84236 -11.59711 -11.34847 -10.84440 -10.77471 -10.73056 -10.44338 -10.40113 -10.04844 -9.58433 -8.87093 -7.78124 -5.21714 0.03723 0.30369 1.41203 1.44560 1.54244 1.67714 1.75906 2.47912 2.66250 3.11372 3.30649 3.48586 3.59434 3.74336 3.86508 3.88467 3.89962 3.96918 4.04662 4.06522 4.08973 4.15204 4.23451 4.26524 4.32804 4.41728 4.47846 4.49602 4.63690 4.69214 4.70253 4.75179 4.79309 4.82494 4.97715 4.98732 5.02667 5.09094 5.14038 5.26886 5.30068 5.34423 5.41270 5.54299 5.63357 5.73020 5.76740 5.79952 6.06033 6.29983 6.52502 6.97248 7.09790 7.32750 7.77734 8.41542 9.23883 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007450 B = 0.003173 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3757.427723 B = 8822.846919 C =11832.293111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.100 3.900 4 N -0.599 5.599 5 C 0.495 3.505 6 O -0.557 6.557 7 C 0.054 3.946 8 O -0.397 6.397 9 C 0.105 3.895 10 C -0.155 4.155 11 C -0.064 4.064 12 C -0.175 4.175 13 C 0.087 3.913 14 N -0.520 5.520 15 C 0.100 3.900 16 C 0.156 3.844 17 H 0.121 0.879 18 C -0.140 4.140 19 C 0.161 3.839 20 N -0.619 5.619 21 C -0.236 4.236 22 H 0.073 0.927 23 C -0.070 4.070 24 N -0.949 5.949 25 Si 0.982 3.018 26 H -0.269 1.269 27 H -0.284 1.284 28 H -0.293 1.293 29 C 0.130 3.870 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.155 0.845 42 H 0.166 0.834 43 H 0.178 0.822 44 H 0.162 0.838 45 H 0.083 0.917 46 H 0.056 0.944 47 H 0.063 0.937 48 H -0.003 1.003 49 H 0.247 0.753 50 H 0.013 0.987 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.599 -4.632 -18.452 29.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C -0.021 4.021 4 N -0.332 5.332 5 C 0.283 3.717 6 O -0.434 6.434 7 C -0.025 4.025 8 O -0.317 6.317 9 C 0.029 3.971 10 C -0.157 4.157 11 C -0.090 4.090 12 C -0.195 4.195 13 C -0.069 4.069 14 N -0.229 5.229 15 C -0.056 4.056 16 C 0.052 3.948 17 H 0.138 0.862 18 C -0.179 4.179 19 C 0.036 3.964 20 N -0.345 5.345 21 C -0.366 4.366 22 H 0.091 0.909 23 C -0.262 4.262 24 N -0.599 5.599 25 Si 0.810 3.190 26 H -0.194 1.194 27 H -0.210 1.210 28 H -0.220 1.220 29 C 0.004 3.996 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.173 0.827 42 H 0.183 0.817 43 H 0.195 0.805 44 H 0.180 0.820 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.015 0.985 49 H 0.056 0.944 50 H 0.031 0.969 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -21.277 -3.802 -18.680 28.567 hybrid contribution 0.923 -0.297 0.808 1.262 sum -20.353 -4.099 -17.872 27.395 Atomic orbital electron populations 1.21671 0.93251 1.02402 1.02894 1.21957 0.97425 0.96165 1.02410 1.22103 0.76267 0.98226 1.05515 1.47978 1.08003 1.73220 1.04033 1.21105 0.87905 0.76304 0.86395 1.90836 1.16495 1.48511 1.87603 1.22419 0.91199 1.05240 0.83641 1.88095 1.33745 1.95810 1.14041 1.21457 0.92409 1.03713 0.79511 1.20834 1.01069 0.94743 0.99007 1.21918 0.94225 0.98824 0.94001 1.22514 0.98075 1.00534 0.98343 1.23321 0.97710 0.87872 0.98018 1.67715 1.10807 1.32900 1.11464 1.22955 0.92007 0.98508 0.92148 1.21894 0.92888 0.94013 0.86036 0.86155 1.23173 0.97082 0.97510 1.00177 1.21589 0.97598 0.84241 0.92995 1.44598 1.12284 1.07203 1.70437 1.19442 0.92381 0.92376 1.32368 0.90921 1.25652 1.01037 0.97853 1.01639 1.70079 1.29029 1.12421 1.48368 0.84960 0.78832 0.77988 0.77262 1.19368 1.21046 1.22011 1.21631 0.87084 0.95839 0.95073 0.92151 0.91034 0.92378 0.91846 0.92694 0.88707 0.87583 0.87072 0.86977 0.89619 0.89289 0.82715 0.81690 0.80465 0.82048 0.89878 0.92502 0.91878 0.98476 0.94369 0.96941 0.95689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.91 71.98 0.71 -0.42 16 2 C -0.14 -1.77 6.26 30.59 0.19 -1.57 16 3 C 0.10 1.45 5.19 86.38 0.45 1.90 16 4 N -0.60 -16.15 2.54 -791.25 -2.01 -18.16 16 5 C 0.49 15.88 6.85 87.66 0.60 16.48 16 6 O -0.56 -26.17 12.85 16.02 0.21 -25.96 16 7 C 0.05 1.08 4.97 71.24 0.35 1.43 16 8 O -0.40 -10.41 9.86 -129.94 -1.28 -11.70 16 9 C 0.11 1.70 6.09 71.24 0.43 2.13 16 10 C -0.15 -3.15 5.53 -19.77 -0.11 -3.26 16 11 C -0.06 -1.15 9.86 22.47 0.22 -0.93 16 12 C -0.18 -2.89 10.11 22.36 0.23 -2.67 16 13 C 0.09 1.70 11.18 84.68 0.95 2.65 16 14 N -0.52 -12.99 10.36 -195.85 -2.03 -15.02 16 15 C 0.10 2.32 10.86 84.67 0.92 3.24 16 16 C 0.16 5.52 3.44 46.18 0.16 5.68 16 17 H 0.12 3.53 7.88 -2.39 -0.02 3.51 16 18 C -0.14 -5.94 6.40 31.99 0.20 -5.74 16 19 C 0.16 8.77 5.89 86.86 0.51 9.28 16 20 N -0.62 -35.67 3.39 -691.98 -2.35 -38.02 16 21 C -0.24 -14.73 10.27 84.03 0.86 -13.87 16 22 H 0.07 4.41 7.83 -2.91 -0.02 4.39 16 23 C -0.07 -4.30 5.49 84.86 0.47 -3.84 16 24 N -0.95 -60.81 10.09 21.65 0.22 -60.59 16 25 Si 0.98 49.49 29.55 68.60 2.03 51.52 16 26 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 27 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 29 C 0.13 6.06 6.49 86.73 0.56 6.62 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.06 0.80 7.22 -2.39 -0.02 0.78 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 1.20 7.96 -2.39 -0.02 1.18 16 36 H 0.11 0.91 6.44 -2.38 -0.02 0.89 16 37 H 0.11 1.42 7.40 -2.38 -0.02 1.41 16 38 H 0.11 1.41 7.19 -2.39 -0.02 1.39 16 39 H 0.09 0.95 8.09 -2.39 -0.02 0.93 16 40 H 0.09 0.91 8.10 -2.39 -0.02 0.89 16 41 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 42 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 43 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 44 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 45 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 46 H 0.06 2.75 5.81 -2.39 -0.01 2.73 16 47 H 0.06 3.98 5.87 -2.39 -0.01 3.96 16 48 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 49 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 50 H 0.01 0.64 6.28 -2.39 -0.01 0.63 16 51 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -91.40 408.37 3.41 -87.99 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.91 Total: 12.80 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 7.71 Total: 17.12 kcal Atomic # 7 Polarization: -125.61 SS G_CDS: -6.17 Total: -131.78 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -1.08 Total: -37.66 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 2.03 Total: 51.52 kcal Total: -91.40 3.41 -87.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567689453.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.012 kcal (2) G-P(sol) polarization free energy of solvation -91.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds