Wall clock time and date at job start Wed Apr 1 2020 04:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47017 * 161.72325 * 3 2 1 5 5 C 1.34776 * 119.99822 * 84.99314 * 4 3 2 6 6 O 1.21280 * 119.99482 * 185.12195 * 5 4 3 7 7 C 1.50701 * 120.00254 * 5.12734 * 5 4 3 8 8 H 1.09005 * 110.53584 * 324.69255 * 7 5 4 9 9 C 1.54266 * 110.48726 * 87.30776 * 7 5 4 10 10 C 1.53873 * 106.59666 * 142.29096 * 9 7 5 11 11 C 1.54264 * 106.59784 * 359.97438 * 10 9 7 12 12 H 1.09003 * 110.48334 * 95.07506 * 11 10 9 13 13 C 1.50700 * 110.48557 * 217.57892 * 11 10 9 14 14 N 1.34774 * 120.00199 * 296.76315 * 13 11 10 15 15 O 1.21282 * 120.00148 * 116.76015 * 13 11 10 16 16 C 1.54885 * 104.31575 * 336.32631 * 11 10 9 17 17 C 1.46504 * 119.99796 * 264.99621 * 4 3 2 18 18 C 1.53041 * 109.46082 * 60.02846 * 17 4 3 19 19 C 1.53187 * 109.31110 * 178.59860 * 18 17 4 20 20 N 1.46937 * 108.76349 * 54.65322 * 19 18 17 21 21 C 1.36936 * 120.62389 * 126.40406 * 20 19 18 22 22 H 1.08000 * 120.00793 * 322.24601 * 21 20 19 23 23 C 1.38819 * 119.99610 * 142.25363 * 21 20 19 24 24 N 1.31622 * 119.99938 * 347.09344 * 23 21 20 25 25 Si 1.86797 * 120.00075 * 167.09499 * 23 21 20 26 26 H 1.48503 * 109.47375 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47206 * 120.00024 * 25 23 21 28 28 H 1.48504 * 109.47053 * 240.00176 * 25 23 21 29 29 C 1.46916 * 118.73839 * 306.38499 * 20 19 18 30 30 C 1.53037 * 109.45969 * 299.96950 * 17 4 3 31 31 H 4.40646 * 5.51399 * 180.02562 * 4 1 2 32 32 H 1.08998 * 109.47267 * 41.72296 * 3 2 1 33 33 H 1.08995 * 109.46941 * 281.72337 * 3 2 1 34 34 H 1.08998 * 110.02964 * 23.00344 * 9 7 5 35 35 H 1.08997 * 110.07030 * 261.59767 * 9 7 5 36 36 H 1.09005 * 110.02743 * 240.71394 * 10 9 7 37 37 H 1.08998 * 110.07316 * 119.31096 * 10 9 7 38 38 H 0.96999 * 120.00290 * 359.97438 * 14 13 11 39 39 H 0.97006 * 120.00321 * 180.02562 * 14 13 11 40 40 H 1.08996 * 110.75455 * 156.32191 * 16 11 10 41 41 H 1.09003 * 110.75523 * 279.69310 * 16 11 10 42 42 H 1.09004 * 109.45473 * 179.97438 * 17 4 3 43 43 H 1.08999 * 109.49395 * 298.56211 * 18 17 4 44 44 H 1.08997 * 109.49643 * 58.66158 * 18 17 4 45 45 H 1.08997 * 109.60214 * 294.86774 * 19 18 17 46 46 H 1.08993 * 109.70348 * 174.50053 * 19 18 17 47 47 H 0.96994 * 119.99763 * 179.97438 * 24 23 21 48 48 H 1.09000 * 109.58436 * 293.81687 * 29 20 19 49 49 H 1.08997 * 109.70220 * 173.46777 * 29 20 19 50 50 H 1.08997 * 109.49978 * 301.34599 * 30 17 4 51 51 H 1.09007 * 109.49625 * 61.43534 * 30 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3124 -0.4332 5 6 3.2618 2.3126 0.4611 6 8 3.5761 3.4230 0.0879 7 6 3.0147 2.0513 1.9245 8 1 2.2123 1.3248 2.0530 9 6 4.3053 1.5575 2.6103 10 6 4.3291 2.1928 4.0115 11 6 3.0526 3.0511 4.1281 12 1 2.2561 2.4862 4.6125 13 6 3.3373 4.3190 4.8911 14 7 3.7234 4.2571 6.1809 15 8 3.2192 5.3952 4.3446 16 6 2.6733 3.3744 2.6616 17 6 3.4821 1.5369 -1.8384 18 6 2.2510 1.2929 -2.7142 19 6 2.6098 1.5625 -4.1788 20 7 3.7770 0.7452 -4.5377 21 6 3.7396 -0.0841 -5.6267 22 1 2.8345 -0.6232 -5.8642 23 6 4.8654 -0.2320 -6.4253 24 7 5.8768 0.6007 -6.2978 25 14 4.9451 -1.6129 -7.6808 26 1 3.6898 -2.4044 -7.6264 27 1 5.1094 -1.0373 -9.0398 28 1 6.0996 -2.4950 -7.3738 29 6 4.9848 0.8352 -3.7061 30 6 4.5994 0.5741 -2.2467 31 1 -1.0503 -0.0003 0.0003 32 1 3.0097 -0.7662 -0.6839 33 1 3.0094 -0.2080 1.0062 34 1 5.1771 1.8779 2.0400 35 1 4.2925 0.4707 2.6932 36 1 5.2128 2.8216 4.1213 37 1 4.3276 1.4150 4.7751 38 1 3.8176 3.3964 6.6182 39 1 3.9063 5.0733 6.6722 40 1 1.6107 3.6025 2.5787 41 1 3.2771 4.1973 2.2789 42 1 3.8220 2.5644 -1.9684 43 1 1.9252 0.2587 -2.6036 44 1 1.4477 1.9628 -2.4073 45 1 2.8490 2.6179 -4.3084 46 1 1.7678 1.2975 -4.8182 47 1 6.6635 0.4971 -6.8556 48 1 5.4178 1.8314 -3.7972 49 1 5.7110 0.0902 -4.0311 50 1 5.4677 0.7322 -1.6071 51 1 4.2511 -0.4533 -2.1406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569592958.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:43 Heat of formation + Delta-G solvation = -9.792699 kcal Electronic energy + Delta-G solvation = -31459.425347 eV Core-core repulsion = 27360.153924 eV Total energy + Delta-G solvation = -4099.271423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.73257 -39.75707 -37.79709 -36.63996 -35.63005 -33.99258 -33.12032 -32.14120 -30.46283 -29.91910 -29.26621 -29.04172 -27.14613 -25.13803 -23.28276 -22.33316 -22.14387 -21.09401 -20.06510 -19.47474 -19.13390 -18.17490 -17.68719 -17.15126 -16.84257 -16.73024 -16.15010 -15.83990 -15.16113 -14.79311 -14.63026 -14.44390 -13.90965 -13.76023 -13.67479 -13.61422 -13.36485 -13.16192 -12.92862 -12.65866 -12.53619 -12.20795 -12.13404 -11.52045 -11.49761 -11.37100 -11.20727 -11.05955 -10.97487 -10.87497 -10.78396 -10.52210 -10.38411 -10.22669 -10.15323 -10.12269 -10.07136 -10.02379 -9.84783 -9.64836 -9.37498 -8.56926 -8.41837 -6.53278 -5.79633 -3.32767 2.34661 2.45038 2.71917 2.79690 3.15411 3.35223 3.42347 3.43548 3.45723 4.07054 4.19375 4.33183 4.40396 4.48178 4.73602 4.85228 4.96798 5.05842 5.11951 5.14185 5.21753 5.29675 5.31774 5.38562 5.46078 5.50116 5.53863 5.61991 5.66286 5.84548 5.86937 5.90488 5.93714 6.09369 6.20103 6.26998 6.34772 6.44087 6.52646 6.58078 6.62701 6.82913 6.90926 6.97395 7.01825 7.28353 7.49121 7.55761 7.61497 7.82178 7.95840 8.31170 8.51439 9.22244 9.81961 10.45769 11.28297 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020471 B = 0.002374 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.455077 B =11793.410138 C =12245.400515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.202 4.202 3 C 0.215 3.785 4 N -0.602 5.602 5 C 0.522 3.478 6 O -0.531 6.531 7 C -0.118 4.118 8 H 0.097 0.903 9 C -0.109 4.109 10 C -0.110 4.110 11 C -0.117 4.117 12 H 0.103 0.897 13 C 0.523 3.477 14 N -0.858 5.858 15 O -0.535 6.535 16 C -0.087 4.087 17 C 0.145 3.855 18 C -0.134 4.134 19 C 0.147 3.853 20 N -0.589 5.589 21 C -0.259 4.259 22 H 0.061 0.939 23 C 0.012 3.988 24 N -0.897 5.897 25 Si 0.901 3.099 26 H -0.276 1.276 27 H -0.289 1.289 28 H -0.289 1.289 29 C 0.179 3.821 30 C -0.146 4.146 31 H 0.215 0.785 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.400 0.600 39 H 0.400 0.600 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.050 0.950 45 H 0.019 0.981 46 H 0.056 0.944 47 H 0.254 0.746 48 H 0.023 0.977 49 H 0.076 0.924 50 H 0.052 0.948 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.933 -1.986 26.504 27.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.203 4.203 3 C 0.092 3.908 4 N -0.334 5.334 5 C 0.310 3.690 6 O -0.407 6.407 7 C -0.139 4.139 8 H 0.115 0.885 9 C -0.147 4.147 10 C -0.148 4.148 11 C -0.138 4.138 12 H 0.121 0.879 13 C 0.308 3.692 14 N -0.422 5.422 15 O -0.410 6.410 16 C -0.125 4.125 17 C 0.043 3.957 18 C -0.174 4.174 19 C 0.021 3.979 20 N -0.312 5.312 21 C -0.389 4.389 22 H 0.078 0.922 23 C -0.189 4.189 24 N -0.540 5.540 25 Si 0.730 3.270 26 H -0.201 1.201 27 H -0.216 1.216 28 H -0.215 1.215 29 C 0.053 3.947 30 C -0.186 4.186 31 H 0.232 0.768 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.229 0.771 39 H 0.230 0.770 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.037 0.963 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.041 0.959 49 H 0.095 0.905 50 H 0.071 0.929 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.692 -0.762 25.647 26.282 hybrid contribution -0.082 -0.961 -0.187 0.982 sum -5.774 -1.723 25.460 26.164 Atomic orbital electron populations 1.24908 0.95885 0.99058 1.00902 1.23600 0.94943 1.01339 1.00459 1.18404 0.83635 0.86946 1.01831 1.48273 1.64491 1.10829 1.09760 1.20446 0.76602 0.84282 0.87671 1.90708 1.47118 1.22406 1.80449 1.22290 0.99670 0.99805 0.92157 0.88519 1.22045 0.97015 1.00539 0.95146 1.22091 0.96600 0.98504 0.97600 1.22200 0.99873 0.94232 0.97512 0.87895 1.20587 0.75532 0.91243 0.81876 1.43906 1.72618 1.12473 1.13213 1.90785 1.51112 1.30747 1.68378 1.22359 1.02684 0.96924 0.90572 1.21232 0.95650 1.01495 0.77293 1.22335 0.96149 1.01059 0.97886 1.20900 0.91477 0.94116 0.91448 1.43959 1.10564 1.47458 1.29257 1.19102 0.98901 1.18312 1.02615 0.92154 1.25330 0.98357 0.97987 0.97186 1.70018 1.07133 1.35670 1.41141 0.86264 0.77623 0.81865 0.81231 1.20142 1.21585 1.21518 1.20624 0.89609 0.99827 0.84680 1.22584 0.96612 0.98462 1.00927 0.76772 0.87306 0.88579 0.90606 0.90559 0.90989 0.90621 0.77149 0.76968 0.90829 0.88204 0.88504 0.92182 0.93150 0.96276 0.92534 0.93595 0.95897 0.90538 0.92937 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 19.25 29.55 0.57 -1.47 16 2 C -0.20 -2.40 11.88 -37.12 -0.44 -2.84 16 3 C 0.21 2.43 4.85 -6.83 -0.03 2.40 16 4 N -0.60 -8.71 2.36 -169.37 -0.40 -9.11 16 5 C 0.52 7.81 6.66 -10.99 -0.07 7.74 16 6 O -0.53 -10.25 15.12 5.56 0.08 -10.16 16 7 C -0.12 -1.23 2.29 -89.91 -0.21 -1.44 16 8 H 0.10 0.85 6.36 -51.93 -0.33 0.52 16 9 C -0.11 -0.89 6.11 -25.61 -0.16 -1.05 16 10 C -0.11 -0.69 6.33 -25.61 -0.16 -0.85 16 11 C -0.12 -0.89 3.24 -90.12 -0.29 -1.18 16 12 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 13 C 0.52 4.91 7.28 -10.99 -0.08 4.83 16 14 N -0.86 -4.29 8.84 31.22 0.28 -4.01 16 15 O -0.53 -7.82 16.58 5.56 0.09 -7.73 16 16 C -0.09 -0.98 5.19 -24.54 -0.13 -1.11 16 17 C 0.14 2.57 2.47 -67.89 -0.17 2.40 16 18 C -0.13 -2.45 4.86 -26.61 -0.13 -2.58 16 19 C 0.15 3.21 6.52 -3.71 -0.02 3.18 16 20 N -0.59 -14.76 2.94 -172.33 -0.51 -15.26 16 21 C -0.26 -7.08 9.48 -15.06 -0.14 -7.22 16 22 H 0.06 1.63 7.86 -52.49 -0.41 1.22 16 23 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 24 N -0.90 -26.10 11.70 55.49 0.65 -25.45 16 25 Si 0.90 21.48 29.57 -169.99 -5.03 16.46 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 C 0.18 4.22 5.24 -3.72 -0.02 4.20 16 30 C -0.15 -2.69 5.32 -26.62 -0.14 -2.83 16 31 H 0.22 1.61 7.80 -54.08 -0.42 1.19 16 32 H 0.11 1.26 6.46 -51.93 -0.34 0.93 16 33 H 0.10 0.79 6.00 -51.93 -0.31 0.48 16 34 H 0.08 0.76 7.83 -51.93 -0.41 0.35 16 35 H 0.08 0.45 7.65 -51.93 -0.40 0.06 16 36 H 0.07 0.51 7.83 -51.93 -0.41 0.10 16 37 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.40 0.72 8.83 -40.82 -0.36 0.35 16 39 H 0.40 1.76 8.93 -40.82 -0.36 1.39 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.10 1.50 6.62 -51.93 -0.34 1.16 16 42 H 0.10 1.99 6.91 -51.93 -0.36 1.63 16 43 H 0.06 1.09 7.27 -51.93 -0.38 0.71 16 44 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.08 1.98 6.70 -51.93 -0.35 1.63 16 50 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.06 1.02 6.72 -51.93 -0.35 0.67 16 LS Contribution 403.38 15.07 6.08 6.08 Total: -1.00 -35.91 403.38 -8.50 -44.41 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -8.03 Total: 2.37 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -1.71 Total: 2.42 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.02 Total: -53.84 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.18 Total: -17.89 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.91 -8.50 -44.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569592958.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.617 kcal (2) G-P(sol) polarization free energy of solvation -35.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds