Wall clock time and date at job start Wed Apr 1 2020 04:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47017 * 161.72325 * 3 2 1 5 5 C 1.34776 * 119.99822 * 84.99314 * 4 3 2 6 6 O 1.21280 * 119.99482 * 185.12195 * 5 4 3 7 7 C 1.50701 * 120.00254 * 5.12734 * 5 4 3 8 8 H 1.09005 * 110.53584 * 324.69255 * 7 5 4 9 9 C 1.54266 * 110.48726 * 87.30776 * 7 5 4 10 10 C 1.53873 * 106.59666 * 142.29096 * 9 7 5 11 11 C 1.54264 * 106.59784 * 359.97438 * 10 9 7 12 12 H 1.09003 * 110.48334 * 95.07506 * 11 10 9 13 13 C 1.50700 * 110.48557 * 217.57892 * 11 10 9 14 14 N 1.34774 * 120.00199 * 296.76315 * 13 11 10 15 15 O 1.21282 * 120.00148 * 116.76015 * 13 11 10 16 16 C 1.54885 * 104.31575 * 336.32631 * 11 10 9 17 17 C 1.46504 * 119.99796 * 264.99621 * 4 3 2 18 18 C 1.53041 * 109.46082 * 60.02846 * 17 4 3 19 19 C 1.53187 * 109.31110 * 178.59860 * 18 17 4 20 20 N 1.46937 * 108.76349 * 54.65322 * 19 18 17 21 21 C 1.36936 * 120.62389 * 126.40406 * 20 19 18 22 22 H 1.08000 * 120.00793 * 322.24601 * 21 20 19 23 23 C 1.38819 * 119.99610 * 142.25363 * 21 20 19 24 24 N 1.31622 * 119.99938 * 347.09344 * 23 21 20 25 25 Si 1.86797 * 120.00075 * 167.09499 * 23 21 20 26 26 H 1.48503 * 109.47375 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47206 * 120.00024 * 25 23 21 28 28 H 1.48504 * 109.47053 * 240.00176 * 25 23 21 29 29 C 1.46916 * 118.73839 * 306.38499 * 20 19 18 30 30 C 1.53037 * 109.45969 * 299.96950 * 17 4 3 31 31 H 4.40646 * 5.51399 * 180.02562 * 4 1 2 32 32 H 1.08998 * 109.47267 * 41.72296 * 3 2 1 33 33 H 1.08995 * 109.46941 * 281.72337 * 3 2 1 34 34 H 1.08998 * 110.02964 * 23.00344 * 9 7 5 35 35 H 1.08997 * 110.07030 * 261.59767 * 9 7 5 36 36 H 1.09005 * 110.02743 * 240.71394 * 10 9 7 37 37 H 1.08998 * 110.07316 * 119.31096 * 10 9 7 38 38 H 0.96999 * 120.00290 * 359.97438 * 14 13 11 39 39 H 0.97006 * 120.00321 * 180.02562 * 14 13 11 40 40 H 1.08996 * 110.75455 * 156.32191 * 16 11 10 41 41 H 1.09003 * 110.75523 * 279.69310 * 16 11 10 42 42 H 1.09004 * 109.45473 * 179.97438 * 17 4 3 43 43 H 1.08999 * 109.49395 * 298.56211 * 18 17 4 44 44 H 1.08997 * 109.49643 * 58.66158 * 18 17 4 45 45 H 1.08997 * 109.60214 * 294.86774 * 19 18 17 46 46 H 1.08993 * 109.70348 * 174.50053 * 19 18 17 47 47 H 0.96994 * 119.99763 * 179.97438 * 24 23 21 48 48 H 1.09000 * 109.58436 * 293.81687 * 29 20 19 49 49 H 1.08997 * 109.70220 * 173.46777 * 29 20 19 50 50 H 1.08997 * 109.49978 * 301.34599 * 30 17 4 51 51 H 1.09007 * 109.49625 * 61.43534 * 30 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3124 -0.4332 5 6 3.2618 2.3126 0.4611 6 8 3.5761 3.4230 0.0879 7 6 3.0147 2.0513 1.9245 8 1 2.2123 1.3248 2.0530 9 6 4.3053 1.5575 2.6103 10 6 4.3291 2.1928 4.0115 11 6 3.0526 3.0511 4.1281 12 1 2.2561 2.4862 4.6125 13 6 3.3373 4.3190 4.8911 14 7 3.7234 4.2571 6.1809 15 8 3.2192 5.3952 4.3446 16 6 2.6733 3.3744 2.6616 17 6 3.4821 1.5369 -1.8384 18 6 2.2510 1.2929 -2.7142 19 6 2.6098 1.5625 -4.1788 20 7 3.7770 0.7452 -4.5377 21 6 3.7396 -0.0841 -5.6267 22 1 2.8345 -0.6232 -5.8642 23 6 4.8654 -0.2320 -6.4253 24 7 5.8768 0.6007 -6.2978 25 14 4.9451 -1.6129 -7.6808 26 1 3.6898 -2.4044 -7.6264 27 1 5.1094 -1.0373 -9.0398 28 1 6.0996 -2.4950 -7.3738 29 6 4.9848 0.8352 -3.7061 30 6 4.5994 0.5741 -2.2467 31 1 -1.0503 -0.0003 0.0003 32 1 3.0097 -0.7662 -0.6839 33 1 3.0094 -0.2080 1.0062 34 1 5.1771 1.8779 2.0400 35 1 4.2925 0.4707 2.6932 36 1 5.2128 2.8216 4.1213 37 1 4.3276 1.4150 4.7751 38 1 3.8176 3.3964 6.6182 39 1 3.9063 5.0733 6.6722 40 1 1.6107 3.6025 2.5787 41 1 3.2771 4.1973 2.2789 42 1 3.8220 2.5644 -1.9684 43 1 1.9252 0.2587 -2.6036 44 1 1.4477 1.9628 -2.4073 45 1 2.8490 2.6179 -4.3084 46 1 1.7678 1.2975 -4.8182 47 1 6.6635 0.4971 -6.8556 48 1 5.4178 1.8314 -3.7972 49 1 5.7110 0.0902 -4.0311 50 1 5.4677 0.7322 -1.6071 51 1 4.2511 -0.4533 -2.1406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569592958.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:42 Heat of formation + Delta-G solvation = -35.294831 kcal Electronic energy + Delta-G solvation = -31460.531202 eV Core-core repulsion = 27360.153924 eV Total energy + Delta-G solvation = -4100.377279 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.74190 -40.68700 -39.20316 -37.64034 -37.00807 -34.73347 -34.56677 -33.46224 -31.97933 -31.59192 -30.30146 -29.79421 -28.18006 -26.93992 -24.54154 -23.90807 -23.32370 -22.26635 -20.84193 -20.70816 -20.35343 -19.18965 -18.57323 -18.45569 -17.97768 -17.68705 -17.09978 -16.89384 -16.71267 -16.11963 -15.72757 -15.42994 -15.39603 -15.21561 -14.84857 -14.65940 -14.49803 -14.43192 -14.27641 -14.19529 -14.00007 -13.28504 -13.07277 -12.99444 -12.93168 -12.70866 -12.61337 -12.21112 -12.16649 -12.13907 -11.99504 -11.97698 -11.83892 -11.60701 -11.54712 -11.37101 -11.29203 -11.09349 -10.88919 -10.65745 -10.62364 -10.60323 -9.80858 -8.59911 -7.89478 -5.47598 1.43335 1.46527 1.47843 1.59169 1.61592 1.66919 1.96310 2.34362 2.49391 2.66352 3.26654 3.32402 3.48426 3.55166 3.62520 3.70086 3.86729 4.02994 4.10558 4.21945 4.26822 4.31479 4.33869 4.36452 4.43487 4.49918 4.52955 4.55200 4.61384 4.71837 4.78899 4.81679 4.88569 5.00862 5.02355 5.09993 5.11543 5.15132 5.20856 5.26517 5.30744 5.34319 5.38136 5.56179 5.62343 5.65713 5.93391 6.38337 6.41984 6.52028 6.74813 7.13781 7.14786 7.40499 7.78706 8.38883 9.16621 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020471 B = 0.002374 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.455077 B =11793.410138 C =12245.400515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.235 4.235 3 C 0.211 3.789 4 N -0.598 5.598 5 C 0.515 3.485 6 O -0.587 6.587 7 C -0.105 4.105 8 H 0.126 0.874 9 C -0.109 4.109 10 C -0.103 4.103 11 C -0.106 4.106 12 H 0.143 0.857 13 C 0.516 3.484 14 N -0.834 5.834 15 O -0.601 6.601 16 C -0.094 4.094 17 C 0.154 3.846 18 C -0.113 4.113 19 C 0.144 3.856 20 N -0.605 5.605 21 C -0.269 4.269 22 H 0.064 0.936 23 C -0.042 4.042 24 N -0.934 5.934 25 Si 0.970 3.030 26 H -0.263 1.263 27 H -0.293 1.293 28 H -0.286 1.286 29 C 0.186 3.814 30 C -0.126 4.126 31 H 0.241 0.759 32 H 0.109 0.891 33 H 0.136 0.864 34 H 0.049 0.951 35 H 0.113 0.887 36 H 0.059 0.941 37 H 0.122 0.878 38 H 0.420 0.580 39 H 0.405 0.595 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.001 0.999 46 H 0.059 0.941 47 H 0.251 0.749 48 H -0.011 1.011 49 H 0.050 0.950 50 H 0.066 0.934 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.456 -5.514 29.721 31.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.236 4.236 3 C 0.090 3.910 4 N -0.328 5.328 5 C 0.306 3.694 6 O -0.467 6.467 7 C -0.126 4.126 8 H 0.144 0.856 9 C -0.147 4.147 10 C -0.140 4.140 11 C -0.127 4.127 12 H 0.161 0.839 13 C 0.302 3.698 14 N -0.398 5.398 15 O -0.481 6.481 16 C -0.133 4.133 17 C 0.051 3.949 18 C -0.153 4.153 19 C 0.018 3.982 20 N -0.329 5.329 21 C -0.399 4.399 22 H 0.082 0.918 23 C -0.239 4.239 24 N -0.578 5.578 25 Si 0.797 3.203 26 H -0.187 1.187 27 H -0.220 1.220 28 H -0.213 1.213 29 C 0.060 3.940 30 C -0.166 4.166 31 H 0.258 0.742 32 H 0.127 0.873 33 H 0.154 0.846 34 H 0.068 0.932 35 H 0.132 0.868 36 H 0.078 0.922 37 H 0.141 0.859 38 H 0.252 0.748 39 H 0.236 0.764 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.019 0.981 46 H 0.078 0.922 47 H 0.060 0.940 48 H 0.007 0.993 49 H 0.068 0.932 50 H 0.084 0.916 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.236 -4.360 28.949 30.157 hybrid contribution 0.337 0.221 -1.180 1.247 sum -6.899 -4.139 27.769 28.911 Atomic orbital electron populations 1.25670 0.96763 0.97461 0.99645 1.23771 0.95400 1.02717 1.01720 1.18710 0.83829 0.84586 1.03913 1.48193 1.64238 1.12428 1.07971 1.21366 0.75162 0.83335 0.89581 1.90693 1.49570 1.24831 1.81573 1.22322 1.01967 0.99966 0.88368 0.85564 1.22136 0.94325 1.02803 0.95431 1.22128 0.95116 0.99099 0.97677 1.22204 1.01847 0.93833 0.94790 0.83907 1.20988 0.74919 0.90964 0.82903 1.43710 1.70355 1.13939 1.11758 1.90769 1.54298 1.33077 1.69990 1.22280 1.01425 0.95972 0.93602 1.20784 0.95106 0.99253 0.79800 1.22069 0.96377 1.01641 0.95221 1.20985 0.90514 0.92655 0.94026 1.44205 1.11474 1.47793 1.29397 1.19430 0.99018 1.18349 1.03082 0.91829 1.26134 0.98089 1.00351 0.99309 1.70183 1.07697 1.37587 1.42340 0.85181 0.77989 0.78890 0.78191 1.18683 1.22023 1.21283 1.20412 0.88826 0.97017 0.87750 1.22296 0.97497 0.99478 0.97296 0.74229 0.87330 0.84648 0.93242 0.86845 0.92235 0.85942 0.74767 0.76441 0.91460 0.93058 0.92088 0.91131 0.92466 0.98146 0.92230 0.93959 0.99325 0.93168 0.91569 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 19.25 74.32 1.43 -1.74 16 2 C -0.23 -4.77 11.88 31.13 0.37 -4.40 16 3 C 0.21 4.09 4.85 84.57 0.41 4.50 16 4 N -0.60 -16.71 2.36 -808.16 -1.91 -18.61 16 5 C 0.52 15.42 6.66 87.66 0.58 16.01 16 6 O -0.59 -24.17 15.12 -3.03 -0.05 -24.21 16 7 C -0.11 -1.98 2.29 -10.34 -0.02 -2.00 16 8 H 0.13 1.67 6.36 -2.38 -0.02 1.66 16 9 C -0.11 -1.42 6.11 31.32 0.19 -1.23 16 10 C -0.10 -0.89 6.33 31.32 0.20 -0.69 16 11 C -0.11 -1.32 3.24 -10.47 -0.03 -1.36 16 12 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 13 C 0.52 9.15 7.28 87.66 0.64 9.79 16 14 N -0.83 -6.30 8.84 -173.53 -1.53 -7.83 16 15 O -0.60 -18.38 16.58 -3.04 -0.05 -18.43 16 16 C -0.09 -2.11 5.19 32.01 0.17 -1.94 16 17 C 0.15 5.55 2.47 45.02 0.11 5.66 16 18 C -0.11 -4.12 4.86 30.67 0.15 -3.97 16 19 C 0.14 6.45 6.52 86.36 0.56 7.02 16 20 N -0.60 -31.14 2.94 -699.13 -2.05 -33.19 16 21 C -0.27 -14.84 9.48 84.04 0.80 -14.04 16 22 H 0.06 3.42 7.86 -2.91 -0.02 3.40 16 23 C -0.04 -2.37 4.96 84.86 0.42 -1.95 16 24 N -0.93 -56.21 11.70 21.65 0.25 -55.95 16 25 Si 0.97 44.58 29.57 68.60 2.03 46.61 16 26 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 27 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 28 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 29 C 0.19 9.17 5.24 86.36 0.45 9.62 16 30 C -0.13 -4.67 5.32 30.67 0.16 -4.51 16 31 H 0.24 2.63 7.80 -4.41 -0.03 2.60 16 32 H 0.11 2.15 6.46 -2.39 -0.02 2.14 16 33 H 0.14 1.53 6.00 -2.39 -0.01 1.52 16 34 H 0.05 0.93 7.83 -2.39 -0.02 0.91 16 35 H 0.11 0.67 7.65 -2.39 -0.02 0.66 16 36 H 0.06 0.70 7.83 -2.38 -0.02 0.68 16 37 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.42 -0.20 8.83 -92.71 -0.82 -1.02 16 39 H 0.40 2.84 8.93 -92.70 -0.83 2.01 16 40 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 1.67 6.62 -2.39 -0.02 1.66 16 42 H 0.06 2.67 6.91 -2.39 -0.02 2.65 16 43 H 0.07 2.45 7.27 -2.39 -0.02 2.43 16 44 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 45 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.06 2.58 7.93 -2.39 -0.02 2.56 16 47 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 48 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 49 H 0.05 2.70 6.70 -2.39 -0.02 2.69 16 50 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 51 H 0.07 2.56 6.72 -2.38 -0.02 2.54 16 Total: -1.00 -86.61 403.38 2.59 -84.02 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -0.69 Total: 12.86 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 6.59 Total: 14.75 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -5.24 Total: -115.60 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -0.10 Total: -42.65 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -86.61 2.59 -84.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569592958.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.728 kcal (2) G-P(sol) polarization free energy of solvation -86.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds