Wall clock time and date at job start Wed Apr 1 2020 05:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47155 * 2 1 4 4 N 1.46502 * 109.47160 * 180.02562 * 3 2 1 5 5 C 1.34780 * 120.00425 * 180.02562 * 4 3 2 6 6 O 1.21276 * 119.99569 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00079 * 179.97438 * 5 4 3 8 8 H 1.09000 * 109.47292 * 59.99697 * 7 5 4 9 9 C 1.53002 * 109.47255 * 299.99673 * 7 5 4 10 10 N 1.46502 * 109.46801 * 179.97438 * 7 5 4 11 11 C 1.34783 * 119.99623 * 204.99848 * 10 7 5 12 12 O 1.21581 * 120.00418 * 0.02562 * 11 10 7 13 13 N 1.34775 * 119.99604 * 179.97438 * 11 10 7 14 14 C 1.46505 * 119.99763 * 175.09433 * 13 11 10 15 15 H 1.08988 * 109.47164 * 326.59829 * 14 13 11 16 16 C 1.53002 * 109.46783 * 86.59598 * 14 13 11 17 17 C 1.50699 * 109.46833 * 185.71607 * 16 14 13 18 18 H 1.07997 * 120.00428 * 355.56034 * 17 16 14 19 19 C 1.37887 * 119.99819 * 175.55555 * 17 16 14 20 20 N 1.31513 * 119.99874 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99848 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47264 * 90.00019 * 21 19 17 23 23 H 1.48501 * 109.46876 * 210.00053 * 21 19 17 24 24 H 1.48499 * 109.47096 * 329.99800 * 21 19 17 25 25 C 1.50697 * 109.46965 * 206.59238 * 14 13 11 26 26 C 1.38227 * 120.00530 * 319.72946 * 25 14 13 27 27 C 1.38237 * 120.00066 * 179.78561 * 26 25 14 28 28 C 1.38234 * 120.00295 * 0.44257 * 27 26 25 29 29 C 1.38234 * 119.99598 * 359.81294 * 28 27 26 30 30 C 1.38240 * 120.00443 * 359.97438 * 29 28 27 31 31 H 1.08997 * 109.46783 * 60.00032 * 1 2 3 32 32 H 1.08998 * 109.47462 * 180.02562 * 1 2 3 33 33 H 1.09010 * 109.47002 * 300.00210 * 1 2 3 34 34 H 1.09000 * 109.47153 * 239.99810 * 2 1 3 35 35 H 1.08997 * 109.46783 * 119.99968 * 2 1 3 36 36 H 1.08997 * 109.47524 * 60.00311 * 3 2 1 37 37 H 1.08997 * 109.47249 * 299.99683 * 3 2 1 38 38 H 0.97003 * 120.00116 * 359.97438 * 4 3 2 39 39 H 1.08998 * 109.47116 * 59.99924 * 9 7 5 40 40 H 1.08999 * 109.46689 * 180.02562 * 9 7 5 41 41 H 1.09000 * 109.46990 * 300.00209 * 9 7 5 42 42 H 0.96997 * 120.00559 * 24.99728 * 10 7 5 43 43 H 0.97000 * 120.00260 * 355.09920 * 13 11 10 44 44 H 1.08998 * 109.47276 * 305.72117 * 16 14 13 45 45 H 1.09009 * 109.47002 * 65.71991 * 16 14 13 46 46 H 0.96998 * 120.00123 * 180.02562 * 20 19 17 47 47 H 1.08007 * 119.99999 * 0.02562 * 26 25 14 48 48 H 1.08008 * 120.00003 * 180.27477 * 27 26 25 49 49 H 1.07993 * 120.00443 * 179.83400 * 28 27 26 50 50 H 1.08001 * 120.00312 * 179.97438 * 29 28 27 51 51 H 1.07998 * 120.00687 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1790 2.6096 -0.0002 6 8 3.5726 3.6599 0.0002 7 6 5.6860 2.6095 -0.0003 8 1 6.0493 2.0960 -0.8904 9 6 6.1960 1.8879 1.2487 10 7 6.1743 3.9908 -0.0004 11 6 7.3964 4.2734 -0.4937 12 8 8.0932 3.3822 -0.9391 13 7 7.8454 5.5441 -0.4943 14 6 9.2130 5.8375 -0.9303 15 1 9.8675 5.0111 -0.6540 16 6 9.2358 6.0205 -2.4491 17 6 10.6601 6.1827 -2.9141 18 1 11.4618 6.2297 -2.1921 19 6 10.9396 6.2709 -4.2615 20 7 9.9633 6.2131 -5.1407 21 14 12.7050 6.4712 -4.8379 22 1 13.3104 5.1325 -5.0533 23 1 12.7263 7.2349 -6.1114 24 1 13.4819 7.2058 -3.8073 25 6 9.6919 7.1019 -0.2648 26 6 8.8325 8.1747 -0.1192 27 6 9.2707 9.3329 0.4953 28 6 10.5710 9.4216 0.9560 29 6 11.4320 8.3507 0.8056 30 6 10.9926 7.1908 0.1951 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.9901 0.6024 -0.0006 39 1 5.8326 0.8602 1.2484 40 1 7.2860 1.8883 1.2488 41 1 5.8327 2.4014 2.1389 42 1 5.6183 4.7019 0.3545 43 1 7.2632 6.2644 -0.2060 44 1 8.7948 5.1458 -2.9271 45 1 8.6629 6.9084 -2.7168 46 1 10.1599 6.2748 -6.0886 47 1 7.8175 8.1067 -0.4820 48 1 8.5978 10.1696 0.6130 49 1 10.9140 10.3274 1.4336 50 1 12.4480 8.4200 1.1651 51 1 11.6651 6.3540 0.0780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646721993.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:30 Heat of formation + Delta-G solvation = -56.343046 kcal Electronic energy + Delta-G solvation = -30155.578879 eV Core-core repulsion = 26054.288881 eV Total energy + Delta-G solvation = -4101.289998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.45245 -39.51164 -38.56936 -36.24165 -35.43613 -34.44784 -33.11640 -32.73763 -31.37911 -30.45606 -29.81619 -28.42486 -26.75629 -25.00085 -23.97212 -22.33793 -22.11071 -22.01077 -20.94373 -20.20577 -19.63683 -18.61664 -17.31265 -16.57705 -16.43990 -16.17927 -15.92377 -15.54177 -15.11471 -14.74777 -14.68763 -14.51147 -14.35176 -14.12128 -13.63627 -13.48929 -13.33293 -13.07888 -12.91515 -12.76342 -12.53473 -12.52161 -12.44868 -12.40317 -12.07312 -11.73252 -11.59010 -11.45039 -11.33026 -11.08373 -10.81371 -10.69065 -10.59198 -10.04114 -10.01904 -9.83427 -9.74041 -9.40676 -9.08106 -8.97096 -8.44087 -8.42503 -8.27523 -7.96264 -5.93347 -3.94574 1.84833 1.88378 2.38013 2.62450 3.23052 3.37135 3.42860 3.45931 3.68139 4.28150 4.35020 4.44559 4.50409 4.52628 4.69201 4.79158 4.96594 5.07536 5.17953 5.19662 5.29368 5.32176 5.33428 5.40850 5.41652 5.44404 5.56308 5.56690 5.66352 5.68071 5.75933 5.95288 6.02276 6.02674 6.09360 6.21887 6.42529 6.54226 6.58450 6.80191 6.88168 6.93058 6.96402 7.15939 7.17869 7.27824 7.47366 7.74693 7.83751 7.91151 8.06477 8.43108 8.44845 9.04308 9.12144 9.67894 11.18396 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011445 B = 0.002385 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.817495 B =11736.379118 C =13271.556188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.117 3.883 4 N -0.729 5.729 5 C 0.513 3.487 6 O -0.534 6.534 7 C 0.147 3.853 8 H 0.116 0.884 9 C -0.158 4.158 10 N -0.737 5.737 11 C 0.708 3.292 12 O -0.583 6.583 13 N -0.735 5.735 14 C 0.199 3.801 15 H 0.088 0.912 16 C 0.024 3.976 17 C -0.511 4.511 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.273 1.273 25 C -0.049 4.049 26 C -0.118 4.118 27 C -0.122 4.122 28 C -0.135 4.135 29 C -0.121 4.121 30 C -0.099 4.099 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.403 0.597 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.401 0.599 43 H 0.388 0.612 44 H 0.033 0.967 45 H 0.014 0.986 46 H 0.259 0.741 47 H 0.115 0.885 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.115 0.885 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.890 -8.004 15.746 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.006 4.006 4 N -0.382 5.382 5 C 0.298 3.702 6 O -0.410 6.410 7 C 0.037 3.963 8 H 0.134 0.866 9 C -0.217 4.217 10 N -0.396 5.396 11 C 0.407 3.593 12 O -0.460 6.460 13 N -0.389 5.389 14 C 0.096 3.904 15 H 0.106 0.894 16 C -0.014 4.014 17 C -0.550 4.550 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.198 1.198 25 C -0.049 4.049 26 C -0.137 4.137 27 C -0.140 4.140 28 C -0.153 4.153 29 C -0.139 4.139 30 C -0.117 4.117 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.238 0.762 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.237 0.763 43 H 0.222 0.778 44 H 0.051 0.949 45 H 0.033 0.967 46 H 0.069 0.931 47 H 0.133 0.867 48 H 0.133 0.867 49 H 0.131 0.869 50 H 0.134 0.866 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.701 -8.047 15.142 21.949 hybrid contribution 0.588 0.488 -0.360 0.845 sum -13.113 -7.559 14.782 21.157 Atomic orbital electron populations 1.21680 0.94495 1.02209 1.02398 1.21745 0.97058 0.95757 1.02892 1.21428 0.79290 0.97268 1.02618 1.45938 1.07439 1.08684 1.76143 1.20794 0.90092 0.83822 0.75457 1.90701 1.70112 1.31251 1.48941 1.20473 0.89257 0.84856 1.01739 0.86644 1.22163 1.03618 0.99478 0.96454 1.44816 1.17943 1.08447 1.68369 1.15807 0.81139 0.83749 0.78568 1.90937 1.57003 1.45866 1.52183 1.45414 1.16315 1.06086 1.71069 1.20194 0.79542 0.93308 0.97369 0.89403 1.19442 0.97658 0.97801 0.86497 1.21088 0.92398 1.49700 0.91789 0.92318 1.24961 0.96899 0.95444 0.96925 1.69973 1.31262 1.50655 1.01420 0.86626 0.85349 0.78096 0.78168 1.20671 1.21359 1.19829 1.19977 0.94150 0.95765 0.95048 1.20843 0.99661 0.93341 0.99816 1.20979 0.96065 0.97501 0.99445 1.20972 0.94208 0.98400 1.01751 1.21038 0.99183 0.93710 1.00013 1.20982 0.95342 0.98258 0.97120 0.92265 0.92134 0.92355 0.91114 0.91223 0.91396 0.91326 0.76243 0.91508 0.90256 0.92066 0.76288 0.77778 0.94877 0.96725 0.93105 0.86716 0.86746 0.86912 0.86646 0.86004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16 2 C -0.14 -0.66 6.05 -26.73 -0.16 -0.82 16 3 C 0.12 0.87 5.67 -4.04 -0.02 0.85 16 4 N -0.73 -5.91 5.45 -60.30 -0.33 -6.24 16 5 C 0.51 5.98 7.22 -10.99 -0.08 5.90 16 6 O -0.53 -8.03 15.84 5.56 0.09 -7.95 16 7 C 0.15 1.78 2.98 -69.08 -0.21 1.58 16 8 H 0.12 1.53 7.58 -51.93 -0.39 1.13 16 9 C -0.16 -1.52 9.38 37.16 0.35 -1.18 16 10 N -0.74 -10.70 4.96 -59.81 -0.30 -10.99 16 11 C 0.71 13.09 8.50 -86.91 -0.74 12.35 16 12 O -0.58 -13.04 15.69 5.29 0.08 -12.95 16 13 N -0.74 -13.21 5.02 -59.81 -0.30 -13.51 16 14 C 0.20 4.21 2.19 -69.08 -0.15 4.06 16 15 H 0.09 2.00 7.46 -51.94 -0.39 1.61 16 16 C 0.02 0.63 4.73 -27.88 -0.13 0.50 16 17 C -0.51 -14.44 8.64 -34.44 -0.30 -14.74 16 18 H 0.06 1.59 6.44 -52.49 -0.34 1.25 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 21 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 C -0.05 -0.92 4.49 -104.62 -0.47 -1.39 16 26 C -0.12 -1.99 9.06 -39.59 -0.36 -2.35 16 27 C -0.12 -1.83 10.05 -39.58 -0.40 -2.22 16 28 C -0.14 -1.97 10.05 -39.58 -0.40 -2.37 16 29 C -0.12 -1.90 10.05 -39.58 -0.40 -2.29 16 30 C -0.10 -1.77 8.63 -39.58 -0.34 -2.12 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.40 2.20 7.89 -40.82 -0.32 1.88 16 39 H 0.07 0.44 7.56 -51.93 -0.39 0.05 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.40 5.34 7.81 -40.82 -0.32 5.02 16 43 H 0.39 5.88 6.91 -40.82 -0.28 5.60 16 44 H 0.03 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.01 0.40 8.13 -51.92 -0.42 -0.02 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.11 1.77 6.91 -52.48 -0.36 1.41 16 48 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 49 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 50 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 51 H 0.12 2.15 7.83 -52.49 -0.41 1.74 16 LS Contribution 422.58 15.07 6.37 6.37 Total: -1.00 -36.19 422.58 -10.46 -46.66 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -8.26 Total: 11.17 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -3.53 Total: -2.94 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.19 Total: -57.51 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.17 Total: -20.90 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -36.19 -10.46 -46.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646721993.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.683 kcal (2) G-P(sol) polarization free energy of solvation -36.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds