Wall clock time and date at job start Wed Apr 1 2020 04:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47343 * 2 1 4 4 N 1.46496 * 109.46883 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00445 * 272.76849 * 4 3 2 6 6 H 1.08004 * 119.99568 * 37.32211 * 5 4 3 7 7 C 1.38813 * 120.00067 * 217.33554 * 5 4 3 8 8 N 1.31613 * 120.00150 * 26.22248 * 7 5 4 9 9 Si 1.86794 * 119.99513 * 206.22942 * 7 5 4 10 10 H 1.48496 * 109.47518 * 59.99590 * 9 7 5 11 11 H 1.48505 * 109.46914 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47508 * 299.99487 * 9 7 5 13 13 C 1.46500 * 119.99968 * 92.76649 * 4 3 2 14 14 C 1.53000 * 109.47286 * 269.99883 * 13 4 3 15 15 N 1.46500 * 109.47078 * 179.97438 * 14 13 4 16 16 C 1.34783 * 120.00109 * 179.97438 * 15 14 13 17 17 O 1.21536 * 119.99360 * 0.02562 * 16 15 14 18 18 C 1.47945 * 120.00139 * 180.02562 * 16 15 14 19 19 C 1.39226 * 120.19756 * 6.11696 * 18 16 15 20 20 C 1.38214 * 119.99238 * 180.32156 * 19 18 16 21 21 C 1.38372 * 120.39522 * 359.67738 * 20 19 18 22 22 C 1.38204 * 120.40419 * 0.02562 * 21 20 19 23 23 C 1.39218 * 119.99336 * 0.02562 * 22 21 20 24 24 C 1.47947 * 120.19671 * 180.02562 * 23 22 21 25 25 O 1.21539 * 120.00304 * 235.75141 * 24 23 22 26 26 N 1.34782 * 120.00160 * 55.74809 * 24 23 22 27 27 C 1.46494 * 120.00050 * 184.91015 * 26 24 23 28 28 C 1.46498 * 119.99854 * 4.91161 * 26 24 23 29 29 H 1.08998 * 109.47285 * 300.00381 * 1 2 3 30 30 H 1.09003 * 109.46595 * 59.99716 * 1 2 3 31 31 H 1.09000 * 109.47665 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46657 * 239.99832 * 2 1 3 33 33 H 1.09003 * 109.46595 * 120.00284 * 2 1 3 34 34 H 1.09002 * 109.46680 * 60.00066 * 3 2 1 35 35 H 1.09000 * 109.46796 * 299.99916 * 3 2 1 36 36 H 0.96997 * 119.99929 * 180.02562 * 8 7 5 37 37 H 1.09008 * 109.47142 * 149.99793 * 13 4 3 38 38 H 1.09005 * 109.47123 * 30.00179 * 13 4 3 39 39 H 1.09001 * 109.47197 * 60.00284 * 14 13 4 40 40 H 1.08993 * 109.47199 * 299.99809 * 14 13 4 41 41 H 0.97005 * 120.00032 * 0.02562 * 15 14 13 42 42 H 1.07995 * 120.00271 * 0.02562 * 19 18 16 43 43 H 1.07999 * 119.79779 * 179.70162 * 20 19 18 44 44 H 1.07998 * 119.79211 * 180.02562 * 21 20 19 45 45 H 1.07995 * 120.00560 * 180.02562 * 22 21 20 46 46 H 1.09000 * 109.47429 * 269.99962 * 27 26 24 47 47 H 1.09004 * 109.47344 * 150.00104 * 27 26 24 48 48 H 1.09001 * 109.47206 * 30.00336 * 27 26 24 49 49 H 1.09003 * 109.47503 * 269.07250 * 28 26 24 50 50 H 1.09006 * 109.47107 * 29.07160 * 28 26 24 51 51 H 1.08997 * 109.47383 * 149.06903 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 1.3852 1.1854 6 1 3.8148 0.7784 1.9965 7 6 5.3641 2.1074 1.3440 8 7 5.5662 3.1989 0.6368 9 14 6.6583 1.5300 2.5609 10 1 7.1211 0.1704 2.1836 11 1 7.8098 2.4676 2.5410 12 1 6.0732 1.4928 3.9254 13 6 4.2381 1.5034 -1.2663 14 6 4.4932 0.0838 -1.7768 15 7 5.2257 0.1448 -3.0441 16 6 5.5633 -0.9930 -3.6829 17 8 5.2595 -2.0696 -3.2077 18 6 6.3035 -0.9313 -4.9624 19 6 6.7645 0.2899 -5.4465 20 6 7.4498 0.3435 -6.6456 21 6 7.6879 -0.8124 -7.3682 22 6 7.2430 -2.0342 -6.8998 23 6 6.5501 -2.1071 -5.6945 24 6 6.0723 -3.4127 -5.1887 25 8 4.8952 -3.5705 -4.9305 26 7 6.9423 -4.4272 -5.0142 27 6 6.4547 -5.7501 -4.6167 28 6 8.3756 -4.2068 -5.2220 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 6.3873 3.7033 0.7473 37 1 5.1905 2.0103 -1.1110 38 1 3.6493 2.0533 -2.0006 39 1 3.5409 -0.4231 -1.9322 40 1 5.0820 -0.4660 -1.0426 41 1 5.4685 1.0042 -3.4231 42 1 6.5825 1.1958 -4.8876 43 1 7.8018 1.2931 -7.0207 44 1 8.2248 -0.7593 -8.3038 45 1 7.4328 -2.9323 -7.4688 46 1 6.4373 -5.8194 -3.5291 47 1 7.1163 -6.5173 -5.0191 48 1 5.4475 -5.8983 -5.0063 49 1 8.6306 -4.4270 -6.2587 50 1 8.6193 -3.1676 -5.0008 51 1 8.9435 -4.8617 -4.5612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663692585.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:28 Heat of formation + Delta-G solvation = -17.157807 kcal Electronic energy + Delta-G solvation = -31178.253855 eV Core-core repulsion = 27078.663057 eV Total energy + Delta-G solvation = -4099.590798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.70235 -38.95366 -38.06396 -36.43903 -35.45312 -34.23259 -32.86732 -31.67577 -31.60616 -30.66236 -28.18710 -28.01260 -26.38373 -25.54956 -24.27236 -23.26929 -22.93869 -21.05468 -20.42660 -20.04785 -19.65124 -17.92756 -17.13644 -16.53929 -16.37022 -15.99565 -15.40156 -15.28101 -15.08416 -14.80709 -14.61834 -14.51953 -14.23021 -13.88314 -13.57364 -13.31702 -13.19275 -12.91069 -12.88070 -12.73546 -12.69293 -12.63233 -12.30393 -12.13379 -12.08122 -11.65930 -11.53758 -11.45236 -11.17920 -10.94216 -10.71320 -10.43504 -10.32860 -10.07866 -9.89977 -9.87165 -9.68455 -9.41637 -9.26157 -9.15157 -8.70133 -8.50709 -8.38689 -6.63528 -5.86035 -3.39170 0.59409 0.90319 2.72934 2.89259 3.14199 3.35535 3.41552 3.46907 3.50746 3.81439 4.32016 4.46853 4.54275 4.62702 4.76903 4.91923 5.05759 5.11316 5.12419 5.18778 5.25205 5.42904 5.46358 5.50730 5.53815 5.56862 5.71325 5.75994 5.80553 5.95728 5.98426 6.07130 6.09864 6.14251 6.24839 6.32457 6.40278 6.45795 6.51796 6.57923 6.66308 6.70294 6.90227 7.01143 7.02833 7.22419 7.28154 7.47132 7.81783 7.92977 8.25465 8.46942 8.62358 9.13854 9.76967 10.35996 11.14569 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009903 B = 0.003041 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.672492 B = 9204.731479 C = 9805.819826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.266 4.266 6 H 0.061 0.939 7 C 0.018 3.982 8 N -0.881 5.881 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.142 3.858 14 C 0.099 3.901 15 N -0.715 5.715 16 C 0.537 3.463 17 O -0.511 6.511 18 C -0.085 4.085 19 C -0.090 4.090 20 C -0.108 4.108 21 C -0.105 4.105 22 C -0.099 4.099 23 C -0.074 4.074 24 C 0.564 3.436 25 O -0.494 6.494 26 N -0.623 5.623 27 C 0.092 3.908 28 C 0.081 3.919 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.033 0.967 36 H 0.255 0.745 37 H 0.090 0.910 38 H 0.030 0.970 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.394 0.606 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.074 0.926 49 H 0.054 0.946 50 H 0.071 0.929 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.797 -8.862 -18.054 21.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.022 3.978 4 N -0.298 5.298 5 C -0.396 4.396 6 H 0.079 0.921 7 C -0.183 4.183 8 N -0.523 5.523 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.205 1.205 13 C 0.015 3.985 14 C -0.026 4.026 15 N -0.367 5.367 16 C 0.322 3.678 17 O -0.387 6.387 18 C -0.089 4.089 19 C -0.109 4.109 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.078 4.078 24 C 0.351 3.649 25 O -0.366 6.366 26 N -0.359 5.359 27 C -0.051 4.051 28 C -0.062 4.062 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.228 0.772 42 H 0.154 0.846 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.149 0.851 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.093 0.907 49 H 0.073 0.927 50 H 0.089 0.911 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.012 -9.571 -17.482 20.818 hybrid contribution 1.062 0.126 0.417 1.148 sum 7.074 -9.445 -17.065 20.748 Atomic orbital electron populations 1.21718 0.97331 1.00418 1.00956 1.22206 0.93850 1.00921 1.01627 1.20937 0.84972 0.92953 0.98949 1.43588 0.99483 1.85116 1.01653 1.18950 1.05614 1.22285 0.92709 0.92126 1.25104 1.00889 0.94225 0.98052 1.70105 1.25671 1.13012 1.43476 0.86566 0.81559 0.78497 0.81432 1.20817 1.21613 1.20541 1.20967 0.99714 0.91059 0.86804 1.22490 0.95042 1.02677 0.82421 1.46024 1.58001 1.07728 1.24911 1.18236 0.80309 0.85009 0.84233 1.90873 1.53473 1.27964 1.66421 1.20172 0.99728 0.92996 0.96000 1.21412 0.96558 0.96804 0.96128 1.21292 0.97961 0.98942 0.94410 1.21255 0.99101 0.92094 0.99845 1.21200 0.96942 0.98709 0.94942 1.19895 0.98732 0.93285 0.95901 1.18075 0.85960 0.83238 0.77651 1.90818 1.16779 1.81662 1.47378 1.47529 1.07207 1.10750 1.70419 1.21568 1.00641 0.82389 1.00456 1.21796 0.80602 1.02811 1.00978 0.93228 0.93469 0.93800 0.92856 0.92385 0.93402 0.94875 0.93526 0.89185 0.95169 0.92664 0.91680 0.77152 0.84612 0.84875 0.85039 0.85075 0.92652 0.91501 0.90704 0.92729 0.91062 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 37.16 0.37 -1.93 16 2 C -0.15 -2.81 6.25 -26.73 -0.17 -2.97 16 3 C 0.15 3.16 5.71 -4.04 -0.02 3.14 16 4 N -0.58 -14.21 2.43 -173.23 -0.42 -14.63 16 5 C -0.27 -7.22 9.42 -15.06 -0.14 -7.36 16 6 H 0.06 1.66 7.95 -52.48 -0.42 1.25 16 7 C 0.02 0.50 4.82 -17.43 -0.08 0.42 16 8 N -0.88 -24.57 11.78 55.49 0.65 -23.91 16 9 Si 0.89 21.46 29.63 -169.99 -5.04 16.42 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.14 3.20 5.47 -4.04 -0.02 3.17 16 14 C 0.10 2.09 6.00 -4.04 -0.02 2.07 16 15 N -0.71 -12.78 5.51 -61.22 -0.34 -13.12 16 16 C 0.54 10.12 7.68 -12.28 -0.09 10.02 16 17 O -0.51 -11.70 12.99 -18.64 -0.24 -11.94 16 18 C -0.08 -1.25 5.90 -104.63 -0.62 -1.87 16 19 C -0.09 -1.00 9.52 -39.22 -0.37 -1.37 16 20 C -0.11 -0.90 10.03 -39.54 -0.40 -1.30 16 21 C -0.10 -0.81 10.03 -39.54 -0.40 -1.20 16 22 C -0.10 -0.95 8.28 -39.23 -0.32 -1.28 16 23 C -0.07 -1.02 4.46 -104.63 -0.47 -1.49 16 24 C 0.56 9.15 5.76 -12.28 -0.07 9.08 16 25 O -0.49 -10.23 14.39 -18.64 -0.27 -10.50 16 26 N -0.62 -7.87 3.27 -190.61 -0.62 -8.49 16 27 C 0.09 1.01 10.40 59.84 0.62 1.63 16 28 C 0.08 0.70 9.28 59.85 0.56 1.25 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 1.07 6.45 -51.93 -0.34 0.73 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.05 1.05 8.06 -51.93 -0.42 0.63 16 35 H 0.03 0.67 7.86 -51.93 -0.41 0.26 16 36 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.09 2.24 5.70 -51.92 -0.30 1.94 16 38 H 0.03 0.63 7.87 -51.93 -0.41 0.22 16 39 H 0.06 1.22 6.45 -51.93 -0.34 0.89 16 40 H 0.06 1.57 8.14 -51.93 -0.42 1.14 16 41 H 0.39 5.84 6.55 -40.82 -0.27 5.57 16 42 H 0.14 1.29 6.45 -52.49 -0.34 0.95 16 43 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.13 0.96 7.52 -52.49 -0.39 0.57 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 48 H 0.07 0.90 7.49 -51.93 -0.39 0.51 16 49 H 0.05 0.33 7.75 -51.93 -0.40 -0.07 16 50 H 0.07 0.66 6.68 -51.93 -0.35 0.31 16 51 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 LS Contribution 412.47 15.07 6.22 6.22 Total: -1.00 -35.54 412.47 -9.83 -45.37 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -8.11 Total: 4.57 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -1.66 Total: 10.01 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.73 Total: -60.15 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.51 Total: -22.44 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.04 Total: 16.42 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.54 -9.83 -45.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663692585.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.216 kcal (2) G-P(sol) polarization free energy of solvation -35.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds