Wall clock time and date at job start Wed Apr 1 2020 04:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47343 * 2 1 4 4 N 1.46496 * 109.46883 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00445 * 272.76849 * 4 3 2 6 6 H 1.08004 * 119.99568 * 37.32211 * 5 4 3 7 7 C 1.38813 * 120.00067 * 217.33554 * 5 4 3 8 8 N 1.31613 * 120.00150 * 26.22248 * 7 5 4 9 9 Si 1.86794 * 119.99513 * 206.22942 * 7 5 4 10 10 H 1.48496 * 109.47518 * 59.99590 * 9 7 5 11 11 H 1.48505 * 109.46914 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47508 * 299.99487 * 9 7 5 13 13 C 1.46500 * 119.99968 * 92.76649 * 4 3 2 14 14 C 1.53000 * 109.47286 * 269.99883 * 13 4 3 15 15 N 1.46500 * 109.47078 * 179.97438 * 14 13 4 16 16 C 1.34783 * 120.00109 * 179.97438 * 15 14 13 17 17 O 1.21536 * 119.99360 * 0.02562 * 16 15 14 18 18 C 1.47945 * 120.00139 * 180.02562 * 16 15 14 19 19 C 1.39226 * 120.19756 * 6.11696 * 18 16 15 20 20 C 1.38214 * 119.99238 * 180.32156 * 19 18 16 21 21 C 1.38372 * 120.39522 * 359.67738 * 20 19 18 22 22 C 1.38204 * 120.40419 * 0.02562 * 21 20 19 23 23 C 1.39218 * 119.99336 * 0.02562 * 22 21 20 24 24 C 1.47947 * 120.19671 * 180.02562 * 23 22 21 25 25 O 1.21539 * 120.00304 * 235.75141 * 24 23 22 26 26 N 1.34782 * 120.00160 * 55.74809 * 24 23 22 27 27 C 1.46494 * 120.00050 * 184.91015 * 26 24 23 28 28 C 1.46498 * 119.99854 * 4.91161 * 26 24 23 29 29 H 1.08998 * 109.47285 * 300.00381 * 1 2 3 30 30 H 1.09003 * 109.46595 * 59.99716 * 1 2 3 31 31 H 1.09000 * 109.47665 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46657 * 239.99832 * 2 1 3 33 33 H 1.09003 * 109.46595 * 120.00284 * 2 1 3 34 34 H 1.09002 * 109.46680 * 60.00066 * 3 2 1 35 35 H 1.09000 * 109.46796 * 299.99916 * 3 2 1 36 36 H 0.96997 * 119.99929 * 180.02562 * 8 7 5 37 37 H 1.09008 * 109.47142 * 149.99793 * 13 4 3 38 38 H 1.09005 * 109.47123 * 30.00179 * 13 4 3 39 39 H 1.09001 * 109.47197 * 60.00284 * 14 13 4 40 40 H 1.08993 * 109.47199 * 299.99809 * 14 13 4 41 41 H 0.97005 * 120.00032 * 0.02562 * 15 14 13 42 42 H 1.07995 * 120.00271 * 0.02562 * 19 18 16 43 43 H 1.07999 * 119.79779 * 179.70162 * 20 19 18 44 44 H 1.07998 * 119.79211 * 180.02562 * 21 20 19 45 45 H 1.07995 * 120.00560 * 180.02562 * 22 21 20 46 46 H 1.09000 * 109.47429 * 269.99962 * 27 26 24 47 47 H 1.09004 * 109.47344 * 150.00104 * 27 26 24 48 48 H 1.09001 * 109.47206 * 30.00336 * 27 26 24 49 49 H 1.09003 * 109.47503 * 269.07250 * 28 26 24 50 50 H 1.09006 * 109.47107 * 29.07160 * 28 26 24 51 51 H 1.08997 * 109.47383 * 149.06903 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 1.3852 1.1854 6 1 3.8148 0.7784 1.9965 7 6 5.3641 2.1074 1.3440 8 7 5.5662 3.1989 0.6368 9 14 6.6583 1.5300 2.5609 10 1 7.1211 0.1704 2.1836 11 1 7.8098 2.4676 2.5410 12 1 6.0732 1.4928 3.9254 13 6 4.2381 1.5034 -1.2663 14 6 4.4932 0.0838 -1.7768 15 7 5.2257 0.1448 -3.0441 16 6 5.5633 -0.9930 -3.6829 17 8 5.2595 -2.0696 -3.2077 18 6 6.3035 -0.9313 -4.9624 19 6 6.7645 0.2899 -5.4465 20 6 7.4498 0.3435 -6.6456 21 6 7.6879 -0.8124 -7.3682 22 6 7.2430 -2.0342 -6.8998 23 6 6.5501 -2.1071 -5.6945 24 6 6.0723 -3.4127 -5.1887 25 8 4.8952 -3.5705 -4.9305 26 7 6.9423 -4.4272 -5.0142 27 6 6.4547 -5.7501 -4.6167 28 6 8.3756 -4.2068 -5.2220 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 6.3873 3.7033 0.7473 37 1 5.1905 2.0103 -1.1110 38 1 3.6493 2.0533 -2.0006 39 1 3.5409 -0.4231 -1.9322 40 1 5.0820 -0.4660 -1.0426 41 1 5.4685 1.0042 -3.4231 42 1 6.5825 1.1958 -4.8876 43 1 7.8018 1.2931 -7.0207 44 1 8.2248 -0.7593 -8.3038 45 1 7.4328 -2.9323 -7.4688 46 1 6.4373 -5.8194 -3.5291 47 1 7.1163 -6.5173 -5.0191 48 1 5.4475 -5.8983 -5.0063 49 1 8.6306 -4.4270 -6.2587 50 1 8.6193 -3.1676 -5.0008 51 1 8.9435 -4.8617 -4.5612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663692585.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:27 Heat of formation + Delta-G solvation = -39.584383 kcal Electronic energy + Delta-G solvation = -31179.226344 eV Core-core repulsion = 27078.663057 eV Total energy + Delta-G solvation = -4100.563288 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.79590 -40.27362 -39.08960 -38.24860 -36.53423 -35.83393 -34.65130 -32.96997 -32.47098 -32.21255 -29.70699 -28.93067 -27.38401 -27.32157 -25.66981 -24.41231 -24.01639 -22.71483 -21.99748 -21.54953 -20.71945 -19.13347 -18.56134 -17.99902 -17.47408 -17.13758 -16.99023 -16.64764 -16.42809 -16.08631 -15.94009 -15.72678 -15.68576 -15.38349 -14.80822 -14.57099 -14.47369 -14.45960 -14.24446 -14.07664 -13.57715 -13.46931 -13.41977 -13.32967 -13.10837 -13.00062 -12.95869 -12.89862 -12.66734 -12.56978 -12.38921 -12.26518 -12.08248 -11.91645 -11.73426 -11.38576 -11.12321 -10.82918 -10.53396 -10.22214 -10.01120 -9.93390 -9.67432 -8.65127 -7.92094 -5.49542 -0.33861 0.12856 1.40706 1.44512 1.51462 1.66447 1.84973 2.03762 2.13668 2.47626 2.79997 3.14913 3.44310 3.56490 3.76783 3.78134 4.07788 4.15385 4.22026 4.27163 4.31335 4.31689 4.33958 4.38442 4.43038 4.46316 4.62272 4.64394 4.69451 4.70856 4.81029 4.82597 4.84734 4.88058 4.94924 5.08933 5.16570 5.18085 5.21847 5.26780 5.33168 5.37943 5.38540 5.52517 5.57839 5.58967 5.67181 5.81407 6.29239 6.39881 6.52020 7.09142 7.13126 7.24730 7.77829 8.32161 9.04924 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009903 B = 0.003041 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.672492 B = 9204.731479 C = 9805.819826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.136 4.136 3 C 0.147 3.853 4 N -0.596 5.596 5 C -0.281 4.281 6 H 0.049 0.951 7 C -0.018 4.018 8 N -0.902 5.902 9 Si 0.945 3.055 10 H -0.290 1.290 11 H -0.283 1.283 12 H -0.274 1.274 13 C 0.153 3.847 14 C 0.123 3.877 15 N -0.708 5.708 16 C 0.531 3.469 17 O -0.563 6.563 18 C -0.120 4.120 19 C -0.091 4.091 20 C -0.098 4.098 21 C -0.082 4.082 22 C -0.091 4.091 23 C -0.095 4.095 24 C 0.551 3.449 25 O -0.560 6.560 26 N -0.623 5.623 27 C 0.089 3.911 28 C 0.075 3.925 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.040 0.960 35 H 0.048 0.952 36 H 0.256 0.744 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.042 0.958 40 H 0.027 0.973 41 H 0.410 0.590 42 H 0.145 0.855 43 H 0.172 0.828 44 H 0.178 0.822 45 H 0.157 0.843 46 H 0.038 0.962 47 H 0.111 0.889 48 H 0.055 0.945 49 H 0.090 0.910 50 H 0.063 0.937 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.967 -8.247 -21.132 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.021 3.979 4 N -0.316 5.316 5 C -0.411 4.411 6 H 0.066 0.934 7 C -0.218 4.218 8 N -0.544 5.544 9 Si 0.772 3.228 10 H -0.217 1.217 11 H -0.208 1.208 12 H -0.199 1.199 13 C 0.025 3.975 14 C -0.003 4.003 15 N -0.361 5.361 16 C 0.318 3.682 17 O -0.442 6.442 18 C -0.124 4.124 19 C -0.110 4.110 20 C -0.115 4.115 21 C -0.100 4.100 22 C -0.110 4.110 23 C -0.100 4.100 24 C 0.339 3.661 25 O -0.437 6.437 26 N -0.357 5.357 27 C -0.053 4.053 28 C -0.066 4.066 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.046 0.954 41 H 0.247 0.753 42 H 0.163 0.837 43 H 0.189 0.811 44 H 0.196 0.804 45 H 0.175 0.825 46 H 0.057 0.943 47 H 0.130 0.870 48 H 0.074 0.926 49 H 0.108 0.892 50 H 0.082 0.918 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.230 -8.942 -20.584 23.904 hybrid contribution 0.449 -0.090 1.273 1.353 sum 8.679 -9.032 -19.311 23.017 Atomic orbital electron populations 1.21648 0.94098 1.01721 1.02134 1.22042 0.96606 0.98988 0.99968 1.21039 0.83358 0.94251 0.99212 1.43815 1.00868 1.85363 1.01565 1.19069 1.06539 1.22076 0.93447 0.93378 1.25650 1.02042 0.94279 0.99799 1.70166 1.25999 1.13581 1.44687 0.85719 0.79622 0.77488 0.79935 1.21737 1.20846 1.19900 1.20829 0.98807 0.91265 0.86560 1.21933 0.94030 1.01217 0.83162 1.45826 1.57722 1.08768 1.23756 1.19035 0.79653 0.84020 0.85453 1.90840 1.55597 1.29697 1.68083 1.19910 1.02328 0.95258 0.94861 1.21600 0.96482 0.95474 0.97415 1.21761 0.96013 1.01027 0.92714 1.21810 0.96905 0.90618 1.00627 1.21513 0.95485 1.00897 0.93062 1.19919 1.00654 0.91587 0.97792 1.18708 0.85599 0.84721 0.77046 1.90762 1.19486 1.82930 1.50553 1.47755 1.08653 1.10435 1.68871 1.21666 1.00941 0.83115 0.99623 1.22077 0.78067 1.02878 1.03610 0.92229 0.92082 0.92475 0.94213 0.94369 0.94145 0.93372 0.93469 0.91188 0.93470 0.94013 0.95442 0.75278 0.83734 0.81075 0.80440 0.82537 0.94278 0.87041 0.92595 0.89165 0.91834 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 9.91 71.98 0.71 -3.50 16 2 C -0.14 -5.37 6.25 30.60 0.19 -5.18 16 3 C 0.15 6.39 5.71 86.38 0.49 6.88 16 4 N -0.60 -30.22 2.43 -701.98 -1.70 -31.93 16 5 C -0.28 -15.77 9.42 84.03 0.79 -14.98 16 6 H 0.05 2.76 7.95 -2.91 -0.02 2.74 16 7 C -0.02 -1.02 4.82 84.86 0.41 -0.61 16 8 N -0.90 -50.92 11.78 21.65 0.26 -50.67 16 9 Si 0.94 44.98 29.63 68.60 2.03 47.02 16 10 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 13 C 0.15 7.10 5.47 86.38 0.47 7.57 16 14 C 0.12 5.56 6.00 86.38 0.52 6.08 16 15 N -0.71 -26.67 5.51 -465.88 -2.57 -29.23 16 16 C 0.53 21.27 7.68 86.81 0.67 21.94 16 17 O -0.56 -28.02 12.99 19.09 0.25 -27.77 16 18 C -0.12 -3.57 5.90 -19.87 -0.12 -3.69 16 19 C -0.09 -1.84 9.52 22.50 0.21 -1.62 16 20 C -0.10 -1.17 10.03 22.30 0.22 -0.95 16 21 C -0.08 -0.82 10.03 22.29 0.22 -0.59 16 22 C -0.09 -1.44 8.28 22.50 0.19 -1.26 16 23 C -0.10 -2.60 4.46 -19.87 -0.09 -2.69 16 24 C 0.55 18.69 5.76 86.82 0.50 19.19 16 25 O -0.56 -25.16 14.39 19.09 0.27 -24.88 16 26 N -0.62 -15.82 3.27 -875.24 -2.87 -18.69 16 27 C 0.09 2.00 10.40 127.77 1.33 3.33 16 28 C 0.08 1.13 9.28 127.77 1.19 2.32 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.66 6.45 -2.38 -0.02 1.64 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.04 1.80 8.06 -2.39 -0.02 1.78 16 35 H 0.05 1.93 7.86 -2.39 -0.02 1.91 16 36 H 0.26 13.86 8.31 -92.71 -0.77 13.08 16 37 H 0.07 3.58 5.70 -2.38 -0.01 3.57 16 38 H 0.05 2.00 7.87 -2.38 -0.02 1.98 16 39 H 0.04 1.99 6.45 -2.39 -0.02 1.97 16 40 H 0.03 1.42 8.14 -2.39 -0.02 1.41 16 41 H 0.41 12.46 6.55 -92.70 -0.61 11.85 16 42 H 0.15 2.52 6.45 -2.91 -0.02 2.50 16 43 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 44 H 0.18 0.28 8.06 -2.91 -0.02 0.25 16 45 H 0.16 1.62 7.52 -2.91 -0.02 1.60 16 46 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.11 1.45 8.07 -2.38 -0.02 1.43 16 48 H 0.06 1.46 7.49 -2.39 -0.02 1.45 16 49 H 0.09 0.74 7.75 -2.39 -0.02 0.72 16 50 H 0.06 1.08 6.68 -2.38 -0.02 1.06 16 51 H 0.09 1.03 8.08 -2.39 -0.02 1.01 16 Total: -1.00 -85.33 412.47 3.91 -81.42 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.32 Total: 22.50 kcal Atomic # 6 Polarization: 24.32 SS G_CDS: 7.91 Total: 32.23 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -6.88 Total: -130.51 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: 0.52 Total: -52.65 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.02 kcal Total: -85.33 3.91 -81.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663692585.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.837 kcal (2) G-P(sol) polarization free energy of solvation -85.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds