Wall clock time and date at job start Wed Apr 1 2020 04:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34766 * 119.99933 * 2 1 4 4 O 1.21549 * 120.00400 * 0.02562 * 3 2 1 5 5 C 1.47867 * 119.99866 * 179.97438 * 3 2 1 6 6 C 1.39700 * 120.07085 * 0.02562 * 5 3 2 7 7 C 1.38061 * 120.14317 * 180.02562 * 6 5 3 8 8 C 1.38096 * 120.29771 * 359.97438 * 7 6 5 9 9 C 1.39672 * 120.14578 * 0.02562 * 8 7 6 10 10 C 1.47857 * 120.07576 * 179.97438 * 9 8 7 11 11 O 1.21554 * 119.99797 * 179.72178 * 10 9 8 12 12 N 1.34775 * 120.00040 * 359.97438 * 10 9 8 13 13 C 1.46496 * 119.99878 * 179.72238 * 12 10 9 14 14 C 1.53003 * 109.47100 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47385 * 180.02562 * 14 13 12 16 16 N 1.46495 * 109.47111 * 180.02562 * 15 14 13 17 17 C 1.36935 * 120.00478 * 89.99726 * 16 15 14 18 18 H 1.08004 * 120.00274 * 217.14216 * 17 16 15 19 19 C 1.38810 * 119.99834 * 37.14261 * 17 16 15 20 20 N 1.31617 * 120.00228 * 21.27605 * 19 17 16 21 21 Si 1.86801 * 119.99943 * 201.27585 * 19 17 16 22 22 H 1.48503 * 109.47098 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47274 * 120.00046 * 21 19 17 24 24 H 1.48505 * 109.46871 * 239.99810 * 21 19 17 25 25 C 1.46509 * 119.99741 * 269.99711 * 16 15 14 26 26 C 1.53000 * 109.47177 * 114.90373 * 25 16 15 27 27 C 1.52998 * 109.46993 * 234.90475 * 25 16 15 28 28 C 1.39292 * 120.07194 * 180.25592 * 5 3 2 29 29 H 1.08999 * 109.47183 * 59.99793 * 1 2 3 30 30 H 1.09004 * 109.47053 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47170 * 299.99926 * 1 2 3 32 32 H 0.96996 * 119.99539 * 180.02562 * 2 1 3 33 33 H 1.08001 * 119.93264 * 0.02562 * 6 5 3 34 34 H 1.07998 * 119.85146 * 180.02562 * 7 6 5 35 35 H 1.08002 * 119.93250 * 180.02562 * 8 7 6 36 36 H 0.97002 * 119.99522 * 359.72369 * 12 10 9 37 37 H 1.08999 * 109.47406 * 299.99619 * 13 12 10 38 38 H 1.09000 * 109.47256 * 60.00660 * 13 12 10 39 39 H 1.09008 * 109.47054 * 300.00413 * 14 13 12 40 40 H 1.09007 * 109.47062 * 59.99696 * 14 13 12 41 41 H 1.09001 * 109.46675 * 299.99905 * 15 14 13 42 42 H 1.08995 * 109.47173 * 59.99639 * 15 14 13 43 43 H 0.97000 * 120.00576 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.46748 * 354.90296 * 25 16 15 45 45 H 1.09001 * 109.46684 * 63.30863 * 26 25 16 46 46 H 1.09000 * 109.47023 * 183.31332 * 26 25 16 47 47 H 1.09000 * 109.46704 * 303.31010 * 26 25 16 48 48 H 1.09003 * 109.47485 * 61.61715 * 27 25 16 49 49 H 1.09003 * 109.47103 * 181.61897 * 27 25 16 50 50 H 1.09001 * 109.47108 * 301.61625 * 27 25 16 51 51 H 1.08003 * 120.15390 * 359.97438 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5312 2.2198 0.0005 5 6 3.6175 1.1671 0.0006 6 6 4.3175 -0.0419 0.0006 7 6 5.6981 -0.0436 0.0016 8 6 6.3963 1.1478 0.0022 9 6 5.7089 2.3637 0.0022 10 6 6.4580 3.6384 0.0033 11 8 5.8583 4.6957 -0.0018 12 7 7.8057 3.6281 0.0049 13 6 8.5479 4.8911 -0.0001 14 6 10.0500 4.6000 0.0023 15 6 10.8252 5.9190 -0.0023 16 7 12.2634 5.6402 -0.0006 17 6 12.9361 5.5054 -1.1857 18 1 13.7277 4.7764 -1.2774 19 6 12.6008 6.3058 -2.2691 20 7 11.9661 7.4426 -2.0760 21 14 13.0503 5.7696 -4.0011 22 1 13.7550 4.4635 -3.9476 23 1 11.8147 5.6330 -4.8133 24 1 13.9390 6.7862 -4.6190 25 6 12.9819 5.5056 1.2690 26 6 13.4996 4.0731 1.4127 27 6 14.1619 6.4792 1.2929 28 6 4.3155 2.3725 0.0060 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9500 -0.8401 -0.0004 33 1 3.7776 -0.9772 -0.0003 34 1 6.2345 -0.9810 0.0012 35 1 7.4763 1.1396 0.0026 36 1 8.2842 2.7843 0.0093 37 1 8.2901 5.4605 -0.8930 38 1 8.2881 5.4687 0.8870 39 1 10.3083 4.0302 0.8950 40 1 10.3096 4.0224 -0.8850 41 1 10.5670 6.4890 -0.8948 42 1 10.5655 6.4961 0.8851 43 1 11.7314 8.0017 -2.8331 44 1 12.3069 5.7325 2.0943 45 1 14.2195 3.8658 0.6209 46 1 13.9830 3.9570 2.3828 47 1 12.6652 3.3759 1.3368 48 1 13.7911 7.5016 1.2194 49 1 14.7135 6.3588 2.2253 50 1 14.8220 6.2707 0.4509 51 1 3.7792 3.3100 0.0093 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664557868.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:54 Heat of formation + Delta-G solvation = -33.833980 kcal Electronic energy + Delta-G solvation = -29539.383052 eV Core-core repulsion = 25439.069120 eV Total energy + Delta-G solvation = -4100.313931 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.73979 -39.69609 -38.10796 -36.78269 -35.13296 -35.05565 -32.66669 -32.19222 -31.45007 -31.12525 -28.79585 -27.39087 -26.19508 -25.56391 -24.33827 -23.60292 -22.55343 -21.44065 -20.88790 -20.17612 -19.52490 -18.78115 -16.89378 -16.63138 -16.47647 -16.24840 -15.67835 -15.65033 -15.43268 -14.95681 -14.61387 -14.60251 -14.13396 -14.10868 -14.07416 -13.58091 -13.45828 -13.32893 -12.87054 -12.80076 -12.64080 -12.41724 -12.36897 -11.74332 -11.69591 -11.50489 -11.43067 -11.30830 -10.98435 -10.77238 -10.65555 -10.42648 -10.40931 -10.21454 -9.98538 -9.85189 -9.67412 -9.58221 -9.49963 -9.43368 -9.38893 -8.86770 -8.47236 -6.55186 -5.76939 -3.34862 0.26826 0.72844 2.27663 2.69488 2.95936 3.22187 3.34740 3.44148 3.45051 3.62653 4.17861 4.30201 4.41571 4.47635 4.67614 4.71914 4.80560 4.99825 5.06699 5.16471 5.24977 5.36296 5.36880 5.49716 5.65622 5.74499 5.81325 5.85311 5.89567 5.92564 5.94092 6.02900 6.17374 6.30431 6.33086 6.39786 6.40310 6.44203 6.67023 6.72361 6.73465 6.78601 6.79895 6.98545 7.11179 7.21165 7.34117 7.57549 7.69684 7.77651 7.85128 8.24786 8.54162 9.21196 9.84143 10.42659 11.22748 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.001891 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.810078 B =14803.983595 C =15231.252679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.559 3.441 4 O -0.528 6.528 5 C -0.147 4.147 6 C -0.067 4.067 7 C -0.132 4.132 8 C -0.060 4.060 9 C -0.134 4.134 10 C 0.551 3.449 11 O -0.533 6.533 12 N -0.718 5.718 13 C 0.120 3.880 14 C -0.145 4.145 15 C 0.150 3.850 16 N -0.579 5.579 17 C -0.251 4.251 18 H 0.060 0.940 19 C 0.011 3.989 20 N -0.885 5.885 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.291 1.291 25 C 0.161 3.839 26 C -0.153 4.153 27 C -0.145 4.145 28 C -0.002 4.002 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.401 0.599 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.397 0.603 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.025 0.975 43 H 0.254 0.746 44 H 0.045 0.955 45 H 0.051 0.949 46 H 0.034 0.966 47 H 0.043 0.957 48 H 0.048 0.952 49 H 0.029 0.971 50 H 0.057 0.943 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.650 -20.068 6.231 26.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.386 5.386 3 C 0.346 3.654 4 O -0.405 6.405 5 C -0.150 4.150 6 C -0.086 4.086 7 C -0.150 4.150 8 C -0.079 4.079 9 C -0.137 4.137 10 C 0.337 3.663 11 O -0.411 6.411 12 N -0.369 5.369 13 C -0.003 4.003 14 C -0.186 4.186 15 C 0.023 3.977 16 N -0.299 5.299 17 C -0.381 4.381 18 H 0.077 0.923 19 C -0.189 4.189 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.217 1.217 25 C 0.054 3.946 26 C -0.213 4.213 27 C -0.204 4.204 28 C -0.022 4.022 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.236 0.764 33 H 0.147 0.853 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.232 0.768 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.043 0.957 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.048 0.952 50 H 0.076 0.924 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.560 -18.361 6.117 25.471 hybrid contribution 0.706 -1.220 -1.016 1.738 sum -15.853 -19.581 5.101 25.705 Atomic orbital electron populations 1.21575 0.78994 1.02385 1.02697 1.45684 1.08003 1.08496 1.76414 1.18256 0.87120 0.83824 0.76186 1.90820 1.69784 1.31065 1.48791 1.19828 0.92846 0.94249 1.08065 1.21435 0.94745 0.96772 0.95630 1.21057 0.93818 0.98455 1.01646 1.21619 1.00509 0.91660 0.94109 1.20070 0.94051 0.93695 1.05871 1.18175 0.82505 0.88467 0.77186 1.90806 1.68710 1.32032 1.49549 1.46098 1.05677 1.10834 1.74334 1.21541 0.92146 0.84385 1.02250 1.22508 0.91331 1.03344 1.01395 1.20816 0.83010 0.91923 1.01974 1.43860 1.02424 1.82980 1.00626 1.18926 1.17248 1.13785 0.88147 0.92258 1.25159 1.00411 0.94408 0.98927 1.69985 1.43249 1.09830 1.29730 0.86416 0.77806 0.78270 0.85420 1.20207 1.21506 1.21749 1.20422 0.92819 0.92373 0.88961 1.22202 1.00535 0.99236 0.99300 1.22034 0.99037 1.00118 0.99210 1.21413 0.92513 0.98557 0.89677 0.91953 0.90460 0.91950 0.76419 0.85302 0.84495 0.84763 0.76765 0.91224 0.91727 0.93240 0.91645 0.88499 0.95691 0.93628 0.93718 0.92982 0.94656 0.93812 0.93333 0.95229 0.92379 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 10.70 59.85 0.64 1.10 16 2 N -0.73 -4.75 5.66 -68.04 -0.39 -5.14 16 3 C 0.56 5.96 7.77 -12.32 -0.10 5.87 16 4 O -0.53 -7.88 16.34 5.32 0.09 -7.80 16 5 C -0.15 -1.45 5.87 -105.02 -0.62 -2.07 16 6 C -0.07 -0.43 9.54 -39.10 -0.37 -0.80 16 7 C -0.13 -0.84 10.02 -39.70 -0.40 -1.24 16 8 C -0.06 -0.51 9.54 -39.10 -0.37 -0.88 16 9 C -0.13 -1.60 5.87 -105.01 -0.62 -2.21 16 10 C 0.55 8.35 7.77 -12.32 -0.10 8.25 16 11 O -0.53 -10.26 16.34 5.32 0.09 -10.17 16 12 N -0.72 -9.92 5.51 -61.25 -0.34 -10.25 16 13 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 14 C -0.15 -2.57 5.65 -26.73 -0.15 -2.72 16 15 C 0.15 3.28 5.28 -4.04 -0.02 3.26 16 16 N -0.58 -13.40 2.37 -165.66 -0.39 -13.79 16 17 C -0.25 -6.44 8.04 -15.06 -0.12 -6.56 16 18 H 0.06 1.54 7.14 -52.48 -0.37 1.17 16 19 C 0.01 0.30 4.96 -17.43 -0.09 0.21 16 20 N -0.89 -24.75 11.43 55.49 0.63 -24.11 16 21 Si 0.89 21.05 29.60 -169.99 -5.03 16.01 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 C 0.16 3.24 3.37 -67.93 -0.23 3.01 16 26 C -0.15 -2.71 9.19 37.16 0.34 -2.37 16 27 C -0.15 -2.89 9.11 37.16 0.34 -2.55 16 28 C 0.00 -0.02 9.14 -38.78 -0.35 -0.38 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.40 1.26 6.85 -40.82 -0.28 0.99 16 33 H 0.13 0.35 6.39 -52.49 -0.34 0.02 16 34 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 35 H 0.13 0.87 6.39 -52.49 -0.34 0.53 16 36 H 0.40 4.30 6.50 -40.82 -0.27 4.03 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.10 2.45 5.48 -51.93 -0.28 2.17 16 42 H 0.02 0.53 7.88 -51.93 -0.41 0.12 16 43 H 0.25 6.91 8.31 -40.82 -0.34 6.58 16 44 H 0.04 0.86 7.77 -51.93 -0.40 0.45 16 45 H 0.05 0.97 7.32 -51.93 -0.38 0.59 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.06 1.24 7.50 -51.93 -0.39 0.85 16 51 H 0.15 2.19 7.23 -52.48 -0.38 1.81 16 LS Contribution 418.44 15.07 6.31 6.31 Total: -1.00 -33.96 418.44 -9.31 -43.28 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -8.04 Total: 3.79 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -2.23 Total: 1.87 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.48 Total: -53.29 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.17 Total: -17.97 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.96 -9.31 -43.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664557868.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.441 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds