Wall clock time and date at job start Wed Apr 1 2020 04:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34766 * 119.99933 * 2 1 4 4 O 1.21549 * 120.00400 * 0.02562 * 3 2 1 5 5 C 1.47867 * 119.99866 * 179.97438 * 3 2 1 6 6 C 1.39700 * 120.07085 * 0.02562 * 5 3 2 7 7 C 1.38061 * 120.14317 * 180.02562 * 6 5 3 8 8 C 1.38096 * 120.29771 * 359.97438 * 7 6 5 9 9 C 1.39672 * 120.14578 * 0.02562 * 8 7 6 10 10 C 1.47857 * 120.07576 * 179.97438 * 9 8 7 11 11 O 1.21554 * 119.99797 * 179.72178 * 10 9 8 12 12 N 1.34775 * 120.00040 * 359.97438 * 10 9 8 13 13 C 1.46496 * 119.99878 * 179.72238 * 12 10 9 14 14 C 1.53003 * 109.47100 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47385 * 180.02562 * 14 13 12 16 16 N 1.46495 * 109.47111 * 180.02562 * 15 14 13 17 17 C 1.36935 * 120.00478 * 89.99726 * 16 15 14 18 18 H 1.08004 * 120.00274 * 217.14216 * 17 16 15 19 19 C 1.38810 * 119.99834 * 37.14261 * 17 16 15 20 20 N 1.31617 * 120.00228 * 21.27605 * 19 17 16 21 21 Si 1.86801 * 119.99943 * 201.27585 * 19 17 16 22 22 H 1.48503 * 109.47098 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47274 * 120.00046 * 21 19 17 24 24 H 1.48505 * 109.46871 * 239.99810 * 21 19 17 25 25 C 1.46509 * 119.99741 * 269.99711 * 16 15 14 26 26 C 1.53000 * 109.47177 * 114.90373 * 25 16 15 27 27 C 1.52998 * 109.46993 * 234.90475 * 25 16 15 28 28 C 1.39292 * 120.07194 * 180.25592 * 5 3 2 29 29 H 1.08999 * 109.47183 * 59.99793 * 1 2 3 30 30 H 1.09004 * 109.47053 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47170 * 299.99926 * 1 2 3 32 32 H 0.96996 * 119.99539 * 180.02562 * 2 1 3 33 33 H 1.08001 * 119.93264 * 0.02562 * 6 5 3 34 34 H 1.07998 * 119.85146 * 180.02562 * 7 6 5 35 35 H 1.08002 * 119.93250 * 180.02562 * 8 7 6 36 36 H 0.97002 * 119.99522 * 359.72369 * 12 10 9 37 37 H 1.08999 * 109.47406 * 299.99619 * 13 12 10 38 38 H 1.09000 * 109.47256 * 60.00660 * 13 12 10 39 39 H 1.09008 * 109.47054 * 300.00413 * 14 13 12 40 40 H 1.09007 * 109.47062 * 59.99696 * 14 13 12 41 41 H 1.09001 * 109.46675 * 299.99905 * 15 14 13 42 42 H 1.08995 * 109.47173 * 59.99639 * 15 14 13 43 43 H 0.97000 * 120.00576 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.46748 * 354.90296 * 25 16 15 45 45 H 1.09001 * 109.46684 * 63.30863 * 26 25 16 46 46 H 1.09000 * 109.47023 * 183.31332 * 26 25 16 47 47 H 1.09000 * 109.46704 * 303.31010 * 26 25 16 48 48 H 1.09003 * 109.47485 * 61.61715 * 27 25 16 49 49 H 1.09003 * 109.47103 * 181.61897 * 27 25 16 50 50 H 1.09001 * 109.47108 * 301.61625 * 27 25 16 51 51 H 1.08003 * 120.15390 * 359.97438 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5312 2.2198 0.0005 5 6 3.6175 1.1671 0.0006 6 6 4.3175 -0.0419 0.0006 7 6 5.6981 -0.0436 0.0016 8 6 6.3963 1.1478 0.0022 9 6 5.7089 2.3637 0.0022 10 6 6.4580 3.6384 0.0033 11 8 5.8583 4.6957 -0.0018 12 7 7.8057 3.6281 0.0049 13 6 8.5479 4.8911 -0.0001 14 6 10.0500 4.6000 0.0023 15 6 10.8252 5.9190 -0.0023 16 7 12.2634 5.6402 -0.0006 17 6 12.9361 5.5054 -1.1857 18 1 13.7277 4.7764 -1.2774 19 6 12.6008 6.3058 -2.2691 20 7 11.9661 7.4426 -2.0760 21 14 13.0503 5.7696 -4.0011 22 1 13.7550 4.4635 -3.9476 23 1 11.8147 5.6330 -4.8133 24 1 13.9390 6.7862 -4.6190 25 6 12.9819 5.5056 1.2690 26 6 13.4996 4.0731 1.4127 27 6 14.1619 6.4792 1.2929 28 6 4.3155 2.3725 0.0060 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9500 -0.8401 -0.0004 33 1 3.7776 -0.9772 -0.0003 34 1 6.2345 -0.9810 0.0012 35 1 7.4763 1.1396 0.0026 36 1 8.2842 2.7843 0.0093 37 1 8.2901 5.4605 -0.8930 38 1 8.2881 5.4687 0.8870 39 1 10.3083 4.0302 0.8950 40 1 10.3096 4.0224 -0.8850 41 1 10.5670 6.4890 -0.8948 42 1 10.5655 6.4961 0.8851 43 1 11.7314 8.0017 -2.8331 44 1 12.3069 5.7325 2.0943 45 1 14.2195 3.8658 0.6209 46 1 13.9830 3.9570 2.3828 47 1 12.6652 3.3759 1.3368 48 1 13.7911 7.5016 1.2194 49 1 14.7135 6.3588 2.2253 50 1 14.8220 6.2707 0.4509 51 1 3.7792 3.3100 0.0093 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664557868.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:53 Heat of formation + Delta-G solvation = -57.258788 kcal Electronic energy + Delta-G solvation = -29540.398828 eV Core-core repulsion = 25439.069120 eV Total energy + Delta-G solvation = -4101.329707 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.59694 -40.72864 -38.99508 -38.46585 -36.46609 -35.83154 -34.29591 -33.54860 -32.37508 -32.14818 -30.42340 -28.04266 -27.70500 -27.16068 -25.48924 -24.69197 -23.65259 -22.45285 -22.20796 -21.30436 -21.11915 -19.67586 -18.20711 -17.77710 -17.31864 -17.22058 -16.99825 -16.74772 -16.60006 -16.34399 -15.95901 -15.69517 -15.42058 -15.28290 -14.99967 -14.82190 -14.59043 -14.50212 -14.12932 -14.02718 -13.50042 -13.27235 -13.25291 -13.21069 -13.14306 -12.93140 -12.83728 -12.72620 -12.49312 -12.48077 -12.33013 -12.10870 -11.89488 -11.68755 -11.32015 -11.30355 -11.22692 -11.06741 -10.46071 -10.42537 -10.29850 -10.05139 -9.98671 -8.47633 -7.74589 -5.36060 -0.43917 -0.06241 1.44668 1.48240 1.49481 1.57391 1.95184 1.98524 2.20126 2.54447 2.80878 3.31304 3.54104 3.57754 3.63016 3.79318 3.99915 4.05395 4.17973 4.27370 4.31240 4.38422 4.42289 4.52736 4.60083 4.60236 4.65928 4.74432 4.82738 4.85566 4.94074 4.95314 5.00157 5.10338 5.13365 5.17014 5.18281 5.22412 5.23275 5.25511 5.31022 5.36699 5.50612 5.65472 5.69822 5.70829 5.77615 5.92289 6.43640 6.46091 6.55219 7.10332 7.11548 7.25448 7.96709 8.48630 9.20547 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.001891 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.810078 B =14803.983595 C =15231.252679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.711 5.711 3 C 0.551 3.449 4 O -0.587 6.587 5 C -0.158 4.158 6 C -0.043 4.043 7 C -0.117 4.117 8 C -0.052 4.052 9 C -0.155 4.155 10 C 0.547 3.453 11 O -0.588 6.588 12 N -0.704 5.704 13 C 0.132 3.868 14 C -0.120 4.120 15 C 0.148 3.852 16 N -0.592 5.592 17 C -0.240 4.240 18 H 0.058 0.942 19 C -0.041 4.041 20 N -0.919 5.919 21 Si 0.946 3.054 22 H -0.264 1.264 23 H -0.295 1.295 24 H -0.298 1.298 25 C 0.150 3.850 26 C -0.141 4.141 27 C -0.137 4.137 28 C -0.029 4.029 29 H 0.048 0.952 30 H 0.120 0.880 31 H 0.050 0.950 32 H 0.421 0.579 33 H 0.177 0.823 34 H 0.184 0.816 35 H 0.159 0.841 36 H 0.415 0.585 37 H 0.043 0.957 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.024 0.976 43 H 0.246 0.754 44 H 0.057 0.943 45 H 0.036 0.964 46 H 0.065 0.935 47 H 0.050 0.950 48 H 0.022 0.978 49 H 0.065 0.935 50 H 0.036 0.964 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.867 -25.649 7.320 30.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.364 5.364 3 C 0.339 3.661 4 O -0.468 6.468 5 C -0.161 4.161 6 C -0.061 4.061 7 C -0.135 4.135 8 C -0.071 4.071 9 C -0.158 4.158 10 C 0.336 3.664 11 O -0.470 6.470 12 N -0.356 5.356 13 C 0.007 3.993 14 C -0.160 4.160 15 C 0.021 3.979 16 N -0.313 5.313 17 C -0.371 4.371 18 H 0.076 0.924 19 C -0.237 4.237 20 N -0.564 5.564 21 Si 0.775 3.225 22 H -0.188 1.188 23 H -0.222 1.222 24 H -0.225 1.225 25 C 0.044 3.956 26 C -0.200 4.200 27 C -0.196 4.196 28 C -0.049 4.049 29 H 0.067 0.933 30 H 0.139 0.861 31 H 0.068 0.932 32 H 0.260 0.740 33 H 0.195 0.805 34 H 0.201 0.799 35 H 0.176 0.824 36 H 0.254 0.746 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.043 0.957 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.041 0.959 49 H 0.084 0.916 50 H 0.056 0.944 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.742 -24.061 7.225 29.647 hybrid contribution 0.442 0.429 -1.263 1.406 sum -15.299 -23.631 5.962 28.776 Atomic orbital electron populations 1.21752 0.78119 1.04786 1.01515 1.45568 1.08613 1.08027 1.74185 1.18547 0.87655 0.84149 0.75713 1.90792 1.70856 1.33340 1.51795 1.19838 0.92511 0.94704 1.09020 1.21954 0.95217 0.96826 0.92125 1.21596 0.93716 0.99178 0.98967 1.21938 1.01765 0.90823 0.92564 1.19774 0.93472 0.93395 1.09137 1.18773 0.82632 0.89227 0.75789 1.90773 1.69743 1.34359 1.52101 1.45835 1.05341 1.10637 1.73797 1.21198 0.91829 0.85414 1.00836 1.22127 0.91021 1.00866 1.01981 1.20709 0.83316 0.93690 1.00197 1.44084 1.02974 1.83058 1.01187 1.19082 1.16372 1.12568 0.89061 0.92419 1.25770 1.01427 0.94655 1.01884 1.70125 1.45309 1.11044 1.29927 0.85544 0.77020 0.78095 0.81828 1.18812 1.22208 1.22550 1.20688 0.92857 0.94176 0.87833 1.22038 1.00477 0.97015 1.00463 1.21958 0.98915 0.98552 1.00204 1.21206 0.93075 0.98381 0.92237 0.93271 0.86146 0.93163 0.74046 0.80539 0.79868 0.82372 0.74620 0.93892 0.92200 0.90908 0.92462 0.92187 0.95727 0.94430 0.92509 0.94436 0.91601 0.93117 0.95912 0.91614 0.94448 0.87336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.70 127.77 1.37 2.10 16 2 N -0.71 -7.62 5.66 -487.45 -2.76 -10.38 16 3 C 0.55 11.77 7.77 86.79 0.67 12.44 16 4 O -0.59 -18.96 16.34 -3.87 -0.06 -19.02 16 5 C -0.16 -2.98 5.87 -20.12 -0.12 -3.10 16 6 C -0.04 -0.36 9.54 22.58 0.22 -0.14 16 7 C -0.12 -0.85 10.02 22.19 0.22 -0.62 16 8 C -0.05 -0.71 9.54 22.58 0.22 -0.49 16 9 C -0.15 -3.71 5.87 -20.12 -0.12 -3.83 16 10 C 0.55 17.36 7.77 86.79 0.67 18.04 16 11 O -0.59 -24.70 16.34 -3.89 -0.06 -24.76 16 12 N -0.70 -19.30 5.51 -465.96 -2.57 -21.87 16 13 C 0.13 4.45 5.67 86.38 0.49 4.94 16 14 C -0.12 -4.16 5.65 30.60 0.17 -3.99 16 15 C 0.15 6.58 5.28 86.38 0.46 7.04 16 16 N -0.59 -27.28 2.37 -678.03 -1.61 -28.89 16 17 C -0.24 -12.32 8.04 84.03 0.68 -11.64 16 18 H 0.06 2.96 7.14 -2.91 -0.02 2.94 16 19 C -0.04 -2.20 4.96 84.86 0.42 -1.78 16 20 N -0.92 -53.34 11.43 21.65 0.25 -53.09 16 21 Si 0.95 43.98 29.60 68.60 2.03 46.01 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 24 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 25 C 0.15 5.79 3.37 44.99 0.15 5.95 16 26 C -0.14 -4.52 9.19 71.98 0.66 -3.86 16 27 C -0.14 -5.33 9.11 71.98 0.66 -4.68 16 28 C -0.03 -0.77 9.14 22.79 0.21 -0.56 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.42 0.79 6.85 -92.71 -0.64 0.16 16 33 H 0.18 -0.25 6.39 -2.91 -0.02 -0.27 16 34 H 0.18 -0.19 8.06 -2.91 -0.02 -0.22 16 35 H 0.16 1.32 6.39 -2.91 -0.02 1.30 16 36 H 0.42 8.11 6.50 -92.71 -0.60 7.51 16 37 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.06 3.18 5.48 -2.39 -0.01 3.17 16 42 H 0.02 1.06 7.88 -2.39 -0.02 1.04 16 43 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 44 H 0.06 2.05 7.77 -2.39 -0.02 2.03 16 45 H 0.04 1.30 7.32 -2.39 -0.02 1.28 16 46 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 49 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 50 H 0.04 1.57 7.50 -2.39 -0.02 1.55 16 51 H 0.11 3.72 7.23 -2.91 -0.02 3.70 16 Total: -1.00 -82.73 418.44 1.96 -80.77 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -0.29 Total: 15.41 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 7.03 Total: 15.81 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -6.68 Total: -114.22 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.13 Total: -43.79 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -82.73 1.96 -80.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664557868.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.515 kcal (2) G-P(sol) polarization free energy of solvation -82.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds