Wall clock time and date at job start Wed Apr 1 2020 05:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47537 * 2 1 4 4 N 1.46501 * 109.47552 * 180.02562 * 3 2 1 5 5 C 1.34777 * 119.99805 * 83.42494 * 4 3 2 6 6 O 1.21582 * 119.99854 * 184.68195 * 5 4 3 7 7 C 1.47507 * 120.00000 * 4.67887 * 5 4 3 8 8 O 1.35188 * 127.15546 * 4.81005 * 7 5 4 9 9 N 1.21479 * 111.55161 * 179.97438 * 8 7 5 10 10 C 1.29067 * 111.68678 * 359.90669 * 9 8 7 11 11 C 1.35252 * 127.15279 * 184.49706 * 7 5 4 12 12 C 1.50112 * 131.33453 * 0.36576 * 11 7 5 13 13 C 1.53578 * 108.01257 * 163.71340 * 12 11 7 14 14 C 1.53003 * 109.80370 * 50.04770 * 13 12 11 15 15 C 1.50652 * 130.33613 * 180.42078 * 10 9 8 16 16 C 1.46498 * 119.99974 * 263.42415 * 4 3 2 17 17 H 1.09001 * 110.89083 * 356.12087 * 16 4 3 18 18 C 1.55164 * 111.00166 * 119.99618 * 16 4 3 19 19 C 1.54326 * 102.94101 * 153.57528 * 18 16 4 20 20 N 1.47025 * 107.27093 * 337.80932 * 19 18 16 21 21 C 1.36939 * 125.64605 * 178.95616 * 20 19 18 22 22 H 1.08005 * 119.99589 * 179.97438 * 21 20 19 23 23 C 1.38811 * 119.99990 * 359.97438 * 21 20 19 24 24 N 1.31621 * 120.00119 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99740 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47207 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47086 * 119.99454 * 25 23 21 28 28 H 1.48498 * 109.47138 * 239.99961 * 25 23 21 29 29 C 1.47426 * 108.70213 * 358.94064 * 20 19 18 30 30 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47105 * 299.99819 * 1 2 3 32 32 H 1.08997 * 109.47417 * 59.99498 * 1 2 3 33 33 H 1.09005 * 109.47105 * 240.00181 * 2 1 3 34 34 H 1.09006 * 109.47514 * 120.00651 * 2 1 3 35 35 H 1.09005 * 109.47237 * 60.00245 * 3 2 1 36 36 H 1.08997 * 109.47177 * 300.00649 * 3 2 1 37 37 H 1.09000 * 109.75152 * 283.34172 * 12 11 7 38 38 H 1.08999 * 109.75127 * 44.08311 * 12 11 7 39 39 H 1.09002 * 109.41387 * 170.14804 * 13 12 11 40 40 H 1.08999 * 109.41815 * 290.00902 * 13 12 11 41 41 H 1.09005 * 109.38073 * 48.42752 * 14 13 12 42 42 H 1.08997 * 109.37820 * 168.20563 * 14 13 12 43 43 H 1.08992 * 109.73944 * 282.81454 * 15 10 9 44 44 H 1.09003 * 109.73903 * 43.52110 * 15 10 9 45 45 H 1.09000 * 110.72505 * 271.94102 * 18 16 4 46 46 H 1.08997 * 110.71709 * 35.04103 * 18 16 4 47 47 H 1.09001 * 109.87965 * 97.22337 * 19 18 16 48 48 H 1.09003 * 109.88472 * 218.23895 * 19 18 16 49 49 H 0.96999 * 119.99664 * 180.02562 * 24 23 21 50 50 H 1.09000 * 110.36402 * 265.28779 * 29 20 19 51 51 H 1.09003 * 110.36747 * 142.96772 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1784 1.3089 -1.1605 6 8 5.3912 1.2233 -1.1529 7 6 3.4440 1.2666 -2.4390 8 8 2.1158 1.4381 -2.6237 9 7 1.8128 1.3459 -3.7965 10 6 2.8429 1.1121 -4.5383 11 6 3.9602 1.0540 -3.6709 12 6 5.3677 0.7974 -4.1253 13 6 5.3104 0.2307 -5.5515 14 6 4.4231 1.1181 -6.4267 15 6 2.9496 0.9328 -6.0303 16 6 4.2381 1.5875 1.2595 17 1 3.5529 1.7526 2.0910 18 6 5.1434 0.3549 1.5213 19 6 6.2671 0.9333 2.4069 20 7 6.3067 2.3838 2.1700 21 6 7.1540 3.2694 2.7809 22 1 7.1042 4.3203 2.5367 23 6 8.0767 2.8163 3.7137 24 7 8.1369 1.5357 4.0116 25 14 9.2329 4.0243 4.5464 26 1 8.9654 5.3946 4.0405 27 1 9.0143 3.9869 6.0148 28 1 10.6386 3.6518 4.2455 29 6 5.2834 2.7268 1.1657 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 5.9317 1.7301 -4.1219 38 1 5.8435 0.0759 -3.4610 39 1 6.3166 0.1996 -5.9697 40 1 4.8981 -0.7780 -5.5244 41 1 4.7109 2.1610 -6.2934 42 1 4.5511 0.8385 -7.4724 43 1 2.6056 -0.0638 -6.3068 44 1 2.3444 1.6853 -6.5358 45 1 4.5937 -0.4213 2.0537 46 1 5.5469 -0.0328 0.5859 47 1 6.0510 0.7349 3.4567 48 1 7.2223 0.4846 2.1340 49 1 8.7814 1.2192 4.6637 50 1 5.7245 2.7560 0.1694 51 1 4.8226 3.6851 1.4057 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664673491.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:28 Heat of formation + Delta-G solvation = 51.300038 kcal Electronic energy + Delta-G solvation = -32327.559137 eV Core-core repulsion = 28230.936894 eV Total energy + Delta-G solvation = -4096.622243 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -45.06808 -40.11899 -38.02175 -36.86203 -36.00465 -33.15799 -32.95529 -32.50056 -31.77028 -30.08578 -29.05140 -27.41823 -26.27773 -25.20042 -24.56191 -23.37696 -23.07124 -21.76319 -20.82857 -20.22101 -20.00934 -19.08813 -17.83354 -17.30935 -16.87449 -16.30253 -15.83923 -15.31784 -15.01307 -14.76834 -14.62953 -14.50184 -14.19827 -14.18033 -13.86969 -13.48175 -13.44126 -12.97103 -12.89118 -12.68969 -12.47129 -12.29060 -12.05482 -11.94093 -11.82274 -11.68045 -11.47299 -11.26011 -11.21492 -10.89333 -10.86336 -10.81735 -10.72789 -10.67197 -10.42448 -10.06487 -10.03487 -9.92164 -9.62184 -9.52141 -9.38307 -8.58002 -8.39432 -6.72219 -5.63879 -2.96589 0.80786 1.93685 2.55687 3.03745 3.18444 3.44397 3.49827 3.52298 3.69403 4.16615 4.49883 4.54165 4.56816 4.62510 4.76904 4.83771 4.90243 4.97356 5.12291 5.17923 5.21432 5.26979 5.32266 5.43586 5.46915 5.47522 5.53660 5.61137 5.63835 5.67876 5.69914 5.74760 5.80540 5.85345 5.86959 5.93330 5.98153 5.99541 6.07726 6.18276 6.24059 6.48667 6.59293 6.62886 6.72840 7.15148 7.41571 7.63889 7.73274 7.90347 7.92642 8.17101 8.33360 9.29413 9.89617 10.56120 11.47840 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013073 B = 0.003130 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.365002 B = 8942.484103 C =10421.865709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.100 3.900 4 N -0.590 5.590 5 C 0.597 3.403 6 O -0.485 6.485 7 C -0.071 4.071 8 O 0.099 5.901 9 N -0.343 5.343 10 C 0.017 3.983 11 C -0.125 4.125 12 C -0.050 4.050 13 C -0.121 4.121 14 C -0.119 4.119 15 C -0.039 4.039 16 C 0.131 3.869 17 H 0.097 0.903 18 C -0.154 4.154 19 C 0.185 3.815 20 N -0.601 5.601 21 C -0.223 4.223 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.125 3.875 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.056 0.944 46 H 0.075 0.925 47 H 0.045 0.955 48 H 0.043 0.957 49 H 0.251 0.749 50 H 0.044 0.956 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.845 -4.290 -18.373 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C -0.023 4.023 4 N -0.321 5.321 5 C 0.381 3.619 6 O -0.359 6.359 7 C -0.135 4.135 8 O 0.032 5.968 9 N -0.048 5.048 10 C -0.144 4.144 11 C -0.130 4.130 12 C -0.087 4.087 13 C -0.159 4.159 14 C -0.157 4.157 15 C -0.077 4.077 16 C 0.028 3.972 17 H 0.115 0.885 18 C -0.193 4.193 19 C 0.060 3.940 20 N -0.328 5.328 21 C -0.351 4.351 22 H 0.095 0.905 23 C -0.206 4.206 24 N -0.570 5.570 25 Si 0.742 3.258 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.002 4.002 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.075 0.925 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.061 0.939 50 H 0.061 0.939 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -15.291 -4.161 -18.407 24.289 hybrid contribution 1.145 0.436 0.534 1.336 sum -14.146 -3.725 -17.874 23.097 Atomic orbital electron populations 1.21676 0.94961 1.01848 1.02062 1.21926 0.96309 0.96858 1.02611 1.21965 0.78943 0.97498 1.03886 1.47870 1.06742 1.70885 1.06604 1.16631 0.86132 0.78380 0.80757 1.90916 1.11613 1.48189 1.85134 1.23695 0.84199 1.08408 0.97232 1.85401 1.23078 1.67694 1.20582 1.73378 1.24230 1.16835 0.90349 1.23361 0.88528 1.03285 0.99260 1.21101 0.98841 1.02391 0.90621 1.20116 0.89439 1.02871 0.96252 1.21681 1.00500 0.99336 0.94374 1.21676 0.93079 1.01076 0.99880 1.20162 0.98321 1.03231 0.86020 1.22549 0.93498 0.98495 0.82661 0.88462 1.23268 0.98252 0.96224 1.01558 1.21057 0.93979 0.83212 0.95755 1.44320 1.38790 1.03763 1.45902 1.19093 1.10285 0.89296 1.16449 0.90478 1.24788 0.99667 0.96268 0.99844 1.69980 1.38337 1.12076 1.36585 0.86048 0.80725 0.79977 0.79048 1.20560 1.21839 1.21809 1.21865 0.89545 0.93961 0.94780 0.92630 0.92455 0.92367 0.92267 0.91240 0.89389 0.89458 0.89259 0.88877 0.90586 0.91526 0.91134 0.90554 0.89356 0.89668 0.92542 0.90685 0.93698 0.93876 0.93900 0.93873 0.94735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.14 -1.46 5.93 -26.74 -0.16 -1.61 16 3 C 0.10 1.15 5.02 -4.04 -0.02 1.13 16 4 N -0.59 -8.85 2.58 -164.91 -0.43 -9.27 16 5 C 0.60 9.70 6.89 -12.48 -0.09 9.62 16 6 O -0.48 -9.43 12.06 5.29 0.06 -9.36 16 7 C -0.07 -1.01 6.58 -36.87 -0.24 -1.25 16 8 O 0.10 1.29 7.46 13.82 0.10 1.40 16 9 N -0.34 -4.43 12.03 33.15 0.40 -4.03 16 10 C 0.02 0.19 7.21 -82.51 -0.60 -0.40 16 11 C -0.12 -1.60 6.02 -104.70 -0.63 -2.23 16 12 C -0.05 -0.56 5.57 -27.87 -0.16 -0.71 16 13 C -0.12 -0.97 5.87 -26.43 -0.16 -1.13 16 14 C -0.12 -0.82 5.85 -26.36 -0.15 -0.98 16 15 C -0.04 -0.31 6.32 -27.54 -0.17 -0.49 16 16 C 0.13 2.34 3.55 -65.78 -0.23 2.10 16 17 H 0.10 1.60 7.78 -51.93 -0.40 1.20 16 18 C -0.15 -3.05 6.33 -24.89 -0.16 -3.21 16 19 C 0.19 4.67 5.37 -3.06 -0.02 4.65 16 20 N -0.60 -15.94 3.39 -170.07 -0.58 -16.52 16 21 C -0.22 -6.40 10.28 -15.06 -0.15 -6.55 16 22 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 23 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -27.64 10.31 55.49 0.57 -27.07 16 25 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 C 0.13 2.75 6.58 -2.53 -0.02 2.74 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.69 7.53 -51.93 -0.39 0.30 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.89 7.80 -51.93 -0.41 0.48 16 36 H 0.09 0.98 5.13 -51.93 -0.27 0.71 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 1.16 7.86 -51.93 -0.41 0.75 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 41 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.07 1.56 6.09 -51.93 -0.32 1.24 16 47 H 0.04 1.22 7.38 -51.93 -0.38 0.84 16 48 H 0.04 1.22 7.51 -51.93 -0.39 0.83 16 49 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 50 H 0.04 1.02 5.70 -51.93 -0.30 0.72 16 51 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 392.16 15.07 5.91 5.91 Total: -1.00 -32.77 392.16 -9.95 -42.72 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -8.30 Total: -1.73 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.68 Total: 0.41 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.03 Total: -56.90 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.17 Total: -7.97 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.77 -9.95 -42.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664673491.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.023 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds