Wall clock time and date at job start Wed Apr 1 2020 05:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47537 * 2 1 4 4 N 1.46501 * 109.47552 * 180.02562 * 3 2 1 5 5 C 1.34777 * 119.99805 * 83.42494 * 4 3 2 6 6 O 1.21582 * 119.99854 * 184.68195 * 5 4 3 7 7 C 1.47507 * 120.00000 * 4.67887 * 5 4 3 8 8 O 1.35188 * 127.15546 * 4.81005 * 7 5 4 9 9 N 1.21479 * 111.55161 * 179.97438 * 8 7 5 10 10 C 1.29067 * 111.68678 * 359.90669 * 9 8 7 11 11 C 1.35252 * 127.15279 * 184.49706 * 7 5 4 12 12 C 1.50112 * 131.33453 * 0.36576 * 11 7 5 13 13 C 1.53578 * 108.01257 * 163.71340 * 12 11 7 14 14 C 1.53003 * 109.80370 * 50.04770 * 13 12 11 15 15 C 1.50652 * 130.33613 * 180.42078 * 10 9 8 16 16 C 1.46498 * 119.99974 * 263.42415 * 4 3 2 17 17 H 1.09001 * 110.89083 * 356.12087 * 16 4 3 18 18 C 1.55164 * 111.00166 * 119.99618 * 16 4 3 19 19 C 1.54326 * 102.94101 * 153.57528 * 18 16 4 20 20 N 1.47025 * 107.27093 * 337.80932 * 19 18 16 21 21 C 1.36939 * 125.64605 * 178.95616 * 20 19 18 22 22 H 1.08005 * 119.99589 * 179.97438 * 21 20 19 23 23 C 1.38811 * 119.99990 * 359.97438 * 21 20 19 24 24 N 1.31621 * 120.00119 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99740 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47207 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47086 * 119.99454 * 25 23 21 28 28 H 1.48498 * 109.47138 * 239.99961 * 25 23 21 29 29 C 1.47426 * 108.70213 * 358.94064 * 20 19 18 30 30 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47105 * 299.99819 * 1 2 3 32 32 H 1.08997 * 109.47417 * 59.99498 * 1 2 3 33 33 H 1.09005 * 109.47105 * 240.00181 * 2 1 3 34 34 H 1.09006 * 109.47514 * 120.00651 * 2 1 3 35 35 H 1.09005 * 109.47237 * 60.00245 * 3 2 1 36 36 H 1.08997 * 109.47177 * 300.00649 * 3 2 1 37 37 H 1.09000 * 109.75152 * 283.34172 * 12 11 7 38 38 H 1.08999 * 109.75127 * 44.08311 * 12 11 7 39 39 H 1.09002 * 109.41387 * 170.14804 * 13 12 11 40 40 H 1.08999 * 109.41815 * 290.00902 * 13 12 11 41 41 H 1.09005 * 109.38073 * 48.42752 * 14 13 12 42 42 H 1.08997 * 109.37820 * 168.20563 * 14 13 12 43 43 H 1.08992 * 109.73944 * 282.81454 * 15 10 9 44 44 H 1.09003 * 109.73903 * 43.52110 * 15 10 9 45 45 H 1.09000 * 110.72505 * 271.94102 * 18 16 4 46 46 H 1.08997 * 110.71709 * 35.04103 * 18 16 4 47 47 H 1.09001 * 109.87965 * 97.22337 * 19 18 16 48 48 H 1.09003 * 109.88472 * 218.23895 * 19 18 16 49 49 H 0.96999 * 119.99664 * 180.02562 * 24 23 21 50 50 H 1.09000 * 110.36402 * 265.28779 * 29 20 19 51 51 H 1.09003 * 110.36747 * 142.96772 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1784 1.3089 -1.1605 6 8 5.3912 1.2233 -1.1529 7 6 3.4440 1.2666 -2.4390 8 8 2.1158 1.4381 -2.6237 9 7 1.8128 1.3459 -3.7965 10 6 2.8429 1.1121 -4.5383 11 6 3.9602 1.0540 -3.6709 12 6 5.3677 0.7974 -4.1253 13 6 5.3104 0.2307 -5.5515 14 6 4.4231 1.1181 -6.4267 15 6 2.9496 0.9328 -6.0303 16 6 4.2381 1.5875 1.2595 17 1 3.5529 1.7526 2.0910 18 6 5.1434 0.3549 1.5213 19 6 6.2671 0.9333 2.4069 20 7 6.3067 2.3838 2.1700 21 6 7.1540 3.2694 2.7809 22 1 7.1042 4.3203 2.5367 23 6 8.0767 2.8163 3.7137 24 7 8.1369 1.5357 4.0116 25 14 9.2329 4.0243 4.5464 26 1 8.9654 5.3946 4.0405 27 1 9.0143 3.9869 6.0148 28 1 10.6386 3.6518 4.2455 29 6 5.2834 2.7268 1.1657 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 5.9317 1.7301 -4.1219 38 1 5.8435 0.0759 -3.4610 39 1 6.3166 0.1996 -5.9697 40 1 4.8981 -0.7780 -5.5244 41 1 4.7109 2.1610 -6.2934 42 1 4.5511 0.8385 -7.4724 43 1 2.6056 -0.0638 -6.3068 44 1 2.3444 1.6853 -6.5358 45 1 4.5937 -0.4213 2.0537 46 1 5.5469 -0.0328 0.5859 47 1 6.0510 0.7349 3.4567 48 1 7.2223 0.4846 2.1340 49 1 8.7814 1.2192 4.6637 50 1 5.7245 2.7560 0.1694 51 1 4.8226 3.6851 1.4057 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664673491.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:27 Heat of formation + Delta-G solvation = 32.973876 kcal Electronic energy + Delta-G solvation = -32328.353819 eV Core-core repulsion = 28230.936894 eV Total energy + Delta-G solvation = -4097.416925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -46.04623 -41.47616 -38.89289 -38.47568 -37.24083 -34.70479 -33.91071 -33.42578 -33.27081 -31.24515 -30.71856 -29.07875 -27.25451 -26.69742 -25.86177 -24.35798 -24.22063 -22.68996 -22.26490 -21.91137 -21.00894 -20.21674 -18.98036 -18.79990 -18.40973 -17.44044 -17.16135 -16.71075 -16.27454 -16.07014 -15.90496 -15.63975 -15.53572 -15.10772 -14.88493 -14.69600 -14.50445 -14.32369 -14.12006 -13.90432 -13.69216 -13.64862 -13.41525 -13.08079 -12.95852 -12.81184 -12.77157 -12.73788 -12.49855 -12.18242 -12.04931 -11.98148 -11.92048 -11.87526 -11.82331 -11.74489 -11.51298 -11.45467 -10.94367 -10.91150 -10.73167 -10.57050 -9.76804 -8.86740 -7.84223 -5.20254 -0.29274 0.99410 1.38463 1.45652 1.47562 1.57772 1.82601 2.01731 2.50641 2.85259 3.19793 3.34269 3.60984 3.68052 3.77052 3.86643 3.88063 3.94169 3.98454 4.03715 4.13162 4.21784 4.28703 4.33113 4.36824 4.42400 4.50557 4.51916 4.65721 4.72731 4.75020 4.84350 4.88442 4.90067 4.95328 4.96858 4.98538 5.04090 5.13082 5.13768 5.20119 5.24433 5.27611 5.38244 5.43681 5.45326 5.59324 5.66058 5.74223 6.17390 6.18957 6.79411 7.03493 7.09991 7.76224 8.41646 9.26347 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013073 B = 0.003130 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.365002 B = 8942.484103 C =10421.865709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.097 3.903 4 N -0.584 5.584 5 C 0.596 3.404 6 O -0.526 6.526 7 C -0.088 4.088 8 O 0.099 5.901 9 N -0.353 5.353 10 C 0.023 3.977 11 C -0.127 4.127 12 C -0.053 4.053 13 C -0.116 4.116 14 C -0.115 4.115 15 C -0.041 4.041 16 C 0.152 3.848 17 H 0.123 0.877 18 C -0.138 4.138 19 C 0.196 3.804 20 N -0.621 5.621 21 C -0.242 4.242 22 H 0.081 0.919 23 C -0.066 4.066 24 N -0.951 5.951 25 Si 0.981 3.019 26 H -0.266 1.266 27 H -0.288 1.288 28 H -0.294 1.294 29 C 0.123 3.877 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.020 0.980 48 H -0.002 1.002 49 H 0.247 0.753 50 H 0.027 0.973 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.938 -3.875 -20.013 26.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.024 4.024 4 N -0.315 5.315 5 C 0.382 3.618 6 O -0.403 6.403 7 C -0.151 4.151 8 O 0.034 5.966 9 N -0.059 5.059 10 C -0.138 4.138 11 C -0.132 4.132 12 C -0.090 4.090 13 C -0.154 4.154 14 C -0.153 4.153 15 C -0.078 4.078 16 C 0.048 3.952 17 H 0.141 0.859 18 C -0.177 4.177 19 C 0.070 3.930 20 N -0.348 5.348 21 C -0.371 4.371 22 H 0.099 0.901 23 C -0.259 4.259 24 N -0.600 5.600 25 Si 0.809 3.191 26 H -0.190 1.190 27 H -0.214 1.214 28 H -0.221 1.221 29 C -0.003 4.003 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.118 0.882 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.039 0.961 48 H 0.016 0.984 49 H 0.056 0.944 50 H 0.044 0.956 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.448 -3.734 -20.066 26.852 hybrid contribution 1.791 0.307 0.959 2.054 sum -15.657 -3.427 -19.107 24.939 Atomic orbital electron populations 1.21638 0.93138 1.02488 1.02727 1.21867 0.97766 0.95767 1.01771 1.22242 0.76354 0.98624 1.05208 1.47854 1.08148 1.70262 1.05216 1.16880 0.85805 0.77486 0.81664 1.90898 1.13446 1.50051 1.85909 1.23340 0.84961 1.10167 0.96672 1.85388 1.22249 1.68102 1.20880 1.73356 1.24700 1.17469 0.90396 1.23944 0.87340 1.01646 1.00873 1.21455 0.99906 1.01258 0.90594 1.20176 0.88433 1.02166 0.98244 1.21688 1.01895 0.99565 0.92235 1.21691 0.91937 1.00482 1.01148 1.20422 0.99363 1.04726 0.83331 1.22217 0.93045 0.95264 0.84695 0.85939 1.23047 0.97056 0.97503 1.00107 1.20766 0.93823 0.83036 0.95326 1.44610 1.39643 1.04065 1.46457 1.19480 1.10989 0.89967 1.16640 0.90143 1.25676 1.01388 0.98088 1.00751 1.70203 1.38898 1.13871 1.37009 0.84972 0.77977 0.78355 0.77780 1.19034 1.21437 1.22089 1.21941 0.89673 0.96043 0.92687 0.92049 0.91203 0.92271 0.93689 0.91533 0.87213 0.88937 0.90025 0.90848 0.89155 0.91030 0.91687 0.87601 0.87556 0.88217 0.89719 0.91823 0.96140 0.98420 0.94373 0.95564 0.93851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.13 -2.56 5.93 30.59 0.18 -2.38 16 3 C 0.10 2.05 5.02 86.38 0.43 2.48 16 4 N -0.58 -17.16 2.58 -793.90 -2.05 -19.21 16 5 C 0.60 19.70 6.89 86.69 0.60 20.30 16 6 O -0.53 -21.43 12.06 -3.97 -0.05 -21.47 16 7 C -0.09 -2.47 6.58 24.03 0.16 -2.31 16 8 O 0.10 2.49 7.46 59.47 0.44 2.94 16 9 N -0.35 -8.59 12.03 -50.84 -0.61 -9.21 16 10 C 0.02 0.50 7.21 43.77 0.32 0.81 16 11 C -0.13 -3.22 6.02 -19.92 -0.12 -3.34 16 12 C -0.05 -1.20 5.57 29.86 0.17 -1.03 16 13 C -0.12 -1.66 5.87 30.79 0.18 -1.48 16 14 C -0.11 -1.26 5.85 30.83 0.18 -1.07 16 15 C -0.04 -0.52 6.32 30.07 0.19 -0.33 16 16 C 0.15 5.33 3.55 46.38 0.16 5.50 16 17 H 0.12 3.76 7.78 -2.39 -0.02 3.74 16 18 C -0.14 -5.55 6.33 31.79 0.20 -5.35 16 19 C 0.20 10.32 5.37 86.73 0.47 10.79 16 20 N -0.62 -33.97 3.39 -691.97 -2.35 -36.32 16 21 C -0.24 -14.22 10.28 84.03 0.86 -13.35 16 22 H 0.08 4.54 7.83 -2.91 -0.02 4.51 16 23 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 24 N -0.95 -59.08 10.31 21.65 0.22 -58.86 16 25 Si 0.98 47.19 29.55 68.60 2.03 49.21 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 28 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 29 C 0.12 5.47 6.58 86.85 0.57 6.04 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.04 1.00 7.53 -2.38 -0.02 0.98 16 34 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.11 1.87 7.80 -2.38 -0.02 1.85 16 36 H 0.09 1.91 5.13 -2.39 -0.01 1.90 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 1.94 7.86 -2.39 -0.02 1.92 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 0.97 8.10 -2.39 -0.02 0.95 16 41 H 0.06 0.81 8.10 -2.38 -0.02 0.79 16 42 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 46 H 0.06 2.73 6.09 -2.39 -0.01 2.71 16 47 H 0.02 1.16 7.38 -2.39 -0.02 1.14 16 48 H 0.00 -0.15 7.51 -2.39 -0.02 -0.17 16 49 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 50 H 0.03 1.29 5.70 -2.39 -0.01 1.27 16 51 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -74.63 392.16 4.29 -70.34 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.93 Total: 12.12 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 5.73 Total: 10.46 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -4.78 Total: -123.59 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.40 Total: -18.54 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.21 kcal Total: -74.63 4.29 -70.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664673491.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.313 kcal (2) G-P(sol) polarization free energy of solvation -74.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds