Wall clock time and date at job start Wed Apr 1 2020 05:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35673 * 117.00426 * 2 1 4 4 C 1.38917 * 119.68756 * 179.97438 * 3 2 1 5 5 C 1.38375 * 119.11384 * 179.97438 * 4 3 2 6 6 C 1.38826 * 118.48326 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.35490 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47625 * 89.99588 * 7 6 5 9 9 C 1.50696 * 109.47117 * 180.02562 * 8 7 6 10 10 O 1.21275 * 120.00563 * 359.97438 * 9 8 7 11 11 N 1.34787 * 119.99718 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99599 * 174.98937 * 11 9 8 13 13 C 1.52998 * 109.47399 * 304.29053 * 12 11 9 14 14 C 1.52998 * 109.47371 * 64.29515 * 12 11 9 15 15 N 1.46502 * 109.47080 * 59.99315 * 14 12 11 16 16 C 1.36943 * 119.99872 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99869 * 359.97438 * 16 15 14 18 18 C 1.38806 * 119.99810 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99954 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00332 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46827 * 90.00304 * 20 18 16 22 22 H 1.48502 * 109.47486 * 210.00075 * 20 18 16 23 23 H 1.48502 * 109.47263 * 330.00910 * 20 18 16 24 24 C 1.52998 * 109.46875 * 184.29232 * 12 11 9 25 25 C 1.53004 * 117.50187 * 132.73676 * 24 12 11 26 26 C 1.53006 * 117.50041 * 64.07435 * 24 12 11 27 27 C 1.38048 * 119.29498 * 359.97438 * 6 5 4 28 28 N 1.31971 * 120.82864 * 0.02562 * 27 6 5 29 29 H 1.08998 * 109.48015 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47256 * 300.00331 * 1 2 3 31 31 H 1.09003 * 109.47223 * 59.99794 * 1 2 3 32 32 H 1.08004 * 120.43967 * 0.28268 * 4 3 2 33 33 H 1.07993 * 120.75713 * 180.02562 * 5 4 3 34 34 H 1.08996 * 109.46974 * 209.99877 * 7 6 5 35 35 H 1.08998 * 109.47020 * 329.99225 * 7 6 5 36 36 H 1.09000 * 109.46934 * 300.00584 * 8 7 6 37 37 H 1.08998 * 109.47218 * 59.99758 * 8 7 6 38 38 H 0.96995 * 119.99957 * 354.98818 * 11 9 8 39 39 H 1.09001 * 109.47011 * 59.99979 * 13 12 11 40 40 H 1.08993 * 109.47207 * 180.02562 * 13 12 11 41 41 H 1.09000 * 109.47083 * 300.00348 * 13 12 11 42 42 H 1.08993 * 109.47125 * 179.97438 * 14 12 11 43 43 H 1.09007 * 109.47091 * 299.99919 * 14 12 11 44 44 H 0.97002 * 120.00294 * 0.02562 * 15 14 12 45 45 H 0.96993 * 120.00038 * 179.97438 * 19 18 16 46 46 H 1.09004 * 115.55317 * 278.41319 * 24 12 11 47 47 H 1.09004 * 117.49310 * 0.02562 * 25 24 12 48 48 H 1.08995 * 117.49766 * 145.02195 * 25 24 12 49 49 H 1.08997 * 117.50385 * 214.97548 * 26 24 12 50 50 H 1.09000 * 117.49457 * 0.02562 * 26 24 12 51 51 H 1.07999 * 119.58655 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2738 0.0005 5 6 4.0486 2.5130 0.0000 6 6 3.2506 3.6490 -0.0005 7 6 3.8770 5.0197 -0.0017 8 6 4.0886 5.4826 -1.4445 9 6 4.7155 6.8529 -1.4456 10 8 4.9678 7.4053 -0.3958 11 7 4.9949 7.4653 -2.6134 12 6 5.5018 8.8397 -2.6167 13 6 4.5290 9.7440 -1.8573 14 6 6.8719 8.8798 -1.9369 15 7 7.8034 8.0138 -2.6640 16 6 9.0984 7.8894 -2.2365 17 1 9.4331 8.4300 -1.3635 18 6 9.9811 7.0694 -2.9258 19 7 11.2259 6.9502 -2.5152 20 14 9.4023 6.1349 -4.4362 21 1 9.6197 6.9674 -5.6466 22 1 10.1709 4.8703 -4.5606 23 1 7.9563 5.8244 -4.3022 24 6 5.6341 9.3310 -4.0597 25 6 5.0703 10.7146 -4.3895 26 6 4.3509 9.4569 -4.8835 27 6 1.8771 3.5097 -0.0010 28 7 1.3186 2.3140 -0.0005 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 4.0228 0.3693 -0.0036 33 1 5.1254 2.5944 0.0000 34 1 3.2187 5.7204 0.5118 35 1 4.8375 4.9806 0.5119 36 1 4.7468 4.7818 -1.9581 37 1 3.1280 5.5216 -1.9582 38 1 4.8604 6.9959 -3.4515 39 1 4.4348 9.3941 -0.8293 40 1 4.9060 10.7667 -1.8602 41 1 3.5530 9.7156 -2.3417 42 1 7.2492 9.9023 -1.9398 43 1 6.7777 8.5297 -0.9088 44 1 7.5028 7.5286 -3.4484 45 1 11.8426 6.3769 -2.9966 46 1 6.5386 9.0185 -4.5817 47 1 4.6056 11.2751 -3.5782 48 1 5.6037 11.3122 -5.1286 49 1 4.4113 9.2279 -5.9474 50 1 3.4125 9.1902 -4.3973 51 1 1.2519 4.3902 -0.0019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666012198.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:51 Heat of formation + Delta-G solvation = 1.675174 kcal Electronic energy + Delta-G solvation = -30647.462509 eV Core-core repulsion = 26548.688370 eV Total energy + Delta-G solvation = -4098.774139 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.90002 -40.19783 -38.43161 -37.86946 -34.91119 -34.21427 -33.52865 -32.43340 -31.44479 -30.37705 -29.35521 -27.53482 -26.17328 -24.97696 -23.73575 -23.47197 -22.34799 -21.85508 -21.72833 -19.96478 -18.94123 -18.64737 -17.67595 -17.37167 -17.28962 -16.25225 -16.01143 -15.43144 -15.19196 -15.09741 -14.75330 -14.59124 -14.49339 -14.23720 -13.94136 -13.62257 -13.33133 -13.24194 -12.97753 -12.76947 -12.49413 -12.33990 -12.24527 -12.21336 -12.06112 -11.77219 -11.68495 -11.33832 -11.21140 -11.09664 -10.96985 -10.90335 -10.75999 -10.32110 -10.23856 -10.08754 -9.94468 -9.84393 -9.56420 -9.37723 -8.82165 -8.67651 -8.58044 -7.14691 -5.72943 -3.06505 0.90700 1.03813 2.83764 2.93523 3.24702 3.32615 3.35317 3.42798 3.54045 3.97363 4.07163 4.55530 4.59619 4.65824 4.72319 4.75847 4.85538 4.94749 4.96814 5.01009 5.03130 5.05476 5.11856 5.15900 5.25383 5.29727 5.33710 5.43643 5.50417 5.58069 5.60697 5.68983 5.71090 5.79664 5.86166 5.92717 5.95687 6.03512 6.10692 6.14549 6.20088 6.24108 6.31809 6.47059 6.54572 6.83941 6.96860 7.03249 7.59482 7.81166 8.05283 8.46057 8.53761 9.25917 9.97946 10.19084 11.46134 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009960 B = 0.002735 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.648324 B =10234.758046 C =11879.534106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.311 6.311 3 C 0.310 3.690 4 C -0.186 4.186 5 C -0.036 4.036 6 C -0.165 4.165 7 C -0.055 4.055 8 C -0.137 4.137 9 C 0.519 3.481 10 O -0.531 6.531 11 N -0.716 5.716 12 C 0.198 3.802 13 C -0.163 4.163 14 C 0.150 3.850 15 N -0.750 5.750 16 C -0.233 4.233 17 H 0.089 0.911 18 C 0.001 3.999 19 N -0.937 5.937 20 Si 0.883 3.117 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.280 1.280 24 C -0.155 4.155 25 C -0.169 4.169 26 C -0.182 4.182 27 C 0.140 3.860 28 N -0.540 5.540 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.396 0.604 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.031 0.969 43 H 0.053 0.947 44 H 0.357 0.643 45 H 0.258 0.742 46 H 0.115 0.885 47 H 0.101 0.899 48 H 0.094 0.906 49 H 0.091 0.909 50 H 0.093 0.907 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.805 -5.960 0.293 24.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.218 6.218 3 C 0.131 3.869 4 C -0.207 4.207 5 C -0.061 4.061 6 C -0.168 4.168 7 C -0.093 4.093 8 C -0.177 4.177 9 C 0.305 3.695 10 O -0.408 6.408 11 N -0.367 5.367 12 C 0.113 3.887 13 C -0.221 4.221 14 C 0.022 3.978 15 N -0.396 5.396 16 C -0.363 4.363 17 H 0.107 0.893 18 C -0.195 4.195 19 N -0.585 5.585 20 Si 0.714 3.286 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.206 1.206 24 C -0.174 4.174 25 C -0.207 4.207 26 C -0.219 4.219 27 C -0.015 4.015 28 N -0.263 5.263 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.229 0.771 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.190 0.810 45 H 0.068 0.932 46 H 0.133 0.867 47 H 0.120 0.880 48 H 0.112 0.888 49 H 0.110 0.890 50 H 0.111 0.889 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -24.244 -5.879 1.202 24.976 hybrid contribution 0.441 -0.897 -1.736 2.003 sum -23.803 -6.776 -0.534 24.755 Atomic orbital electron populations 1.22832 0.77354 1.02809 1.02416 1.86232 1.22828 1.24715 1.88002 1.19847 0.89460 0.84665 0.92896 1.21095 0.91960 0.99673 1.07939 1.21459 1.00987 0.90684 0.92994 1.20808 0.94659 0.96643 1.04666 1.20180 1.02278 0.91180 0.95673 1.21672 1.02112 0.94982 0.98906 1.20406 0.78075 0.87197 0.83797 1.90649 1.52430 1.66374 1.31334 1.46001 1.66978 1.15199 1.08498 1.20071 0.94851 0.80838 0.92949 1.22265 0.97979 0.99392 1.02482 1.21043 0.86151 0.94561 0.96072 1.42598 1.09138 1.54815 1.33000 1.19078 0.84621 1.22484 1.10115 0.89316 1.24648 0.95621 1.00217 0.98967 1.69698 1.03901 1.43068 1.41867 0.86572 0.77586 0.80046 0.84425 1.21267 1.21835 1.20630 1.22555 0.98113 1.01146 0.95566 1.23071 1.03578 0.90541 1.03490 1.22961 0.96230 1.03005 0.99741 1.22314 0.92286 0.93503 0.93410 1.67307 1.40914 0.98803 1.19268 0.88750 0.92367 0.92359 0.84097 0.83725 0.89919 0.89553 0.88930 0.89235 0.77081 0.89968 0.91497 0.92971 0.95118 0.92942 0.80967 0.93198 0.86701 0.88035 0.88790 0.89003 0.88859 0.82423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.32 10.48 -18.72 -0.20 -3.51 16 3 C 0.31 3.52 7.49 -17.12 -0.13 3.39 16 4 C -0.19 -1.91 10.04 -39.28 -0.39 -2.31 16 5 C -0.04 -0.36 9.85 -39.31 -0.39 -0.74 16 6 C -0.17 -1.65 5.15 -104.47 -0.54 -2.19 16 7 C -0.05 -0.58 4.66 -27.88 -0.13 -0.71 16 8 C -0.14 -1.46 5.68 -27.89 -0.16 -1.62 16 9 C 0.52 7.48 7.24 -10.98 -0.08 7.40 16 10 O -0.53 -9.39 12.22 5.56 0.07 -9.32 16 11 N -0.72 -9.93 4.73 -47.61 -0.23 -10.15 16 12 C 0.20 2.99 0.54 -131.82 -0.07 2.92 16 13 C -0.16 -2.17 6.98 37.16 0.26 -1.91 16 14 C 0.15 3.02 5.03 -4.04 -0.02 3.00 16 15 N -0.75 -17.70 4.84 -59.91 -0.29 -17.99 16 16 C -0.23 -6.67 10.47 -15.06 -0.16 -6.83 16 17 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 18 C 0.00 0.02 5.50 -17.43 -0.10 -0.08 16 19 N -0.94 -29.72 13.97 55.49 0.78 -28.94 16 20 Si 0.88 21.93 27.73 -169.99 -4.71 17.22 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 24 C -0.16 -2.13 4.84 -90.62 -0.44 -2.56 16 25 C -0.17 -1.92 9.64 -26.69 -0.26 -2.18 16 26 C -0.18 -1.92 9.82 -26.69 -0.26 -2.19 16 27 C 0.14 1.39 10.85 -17.56 -0.19 1.20 16 28 N -0.54 -6.08 9.22 -13.33 -0.12 -6.21 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 31 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 32 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 33 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 35 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.40 4.72 8.48 -40.82 -0.35 4.38 16 39 H 0.08 1.25 6.03 -51.93 -0.31 0.93 16 40 H 0.07 0.83 6.78 -51.93 -0.35 0.48 16 41 H 0.05 0.60 6.99 -51.93 -0.36 0.24 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 1.19 6.32 -51.93 -0.33 0.86 16 44 H 0.36 8.07 4.48 -40.82 -0.18 7.89 16 45 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 46 H 0.11 1.85 7.08 -51.93 -0.37 1.49 16 47 H 0.10 1.07 5.88 -51.93 -0.31 0.77 16 48 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.09 0.91 7.35 -51.93 -0.38 0.53 16 51 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 409.18 15.07 6.17 6.17 Total: -1.00 -34.79 409.18 -8.56 -43.34 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -8.01 Total: 13.44 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.00 Total: -4.04 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: 0.14 Total: -63.29 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.13 Total: -12.84 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.79 -8.56 -43.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666012198.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.017 kcal (2) G-P(sol) polarization free energy of solvation -34.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds