Wall clock time and date at job start Wed Apr 1 2020 05:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35673 * 117.00426 * 2 1 4 4 C 1.38917 * 119.68756 * 179.97438 * 3 2 1 5 5 C 1.38375 * 119.11384 * 179.97438 * 4 3 2 6 6 C 1.38826 * 118.48326 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.35490 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47625 * 89.99588 * 7 6 5 9 9 C 1.50696 * 109.47117 * 180.02562 * 8 7 6 10 10 O 1.21275 * 120.00563 * 359.97438 * 9 8 7 11 11 N 1.34787 * 119.99718 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99599 * 174.98937 * 11 9 8 13 13 C 1.52998 * 109.47399 * 304.29053 * 12 11 9 14 14 C 1.52998 * 109.47371 * 64.29515 * 12 11 9 15 15 N 1.46502 * 109.47080 * 59.99315 * 14 12 11 16 16 C 1.36943 * 119.99872 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99869 * 359.97438 * 16 15 14 18 18 C 1.38806 * 119.99810 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99954 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00332 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46827 * 90.00304 * 20 18 16 22 22 H 1.48502 * 109.47486 * 210.00075 * 20 18 16 23 23 H 1.48502 * 109.47263 * 330.00910 * 20 18 16 24 24 C 1.52998 * 109.46875 * 184.29232 * 12 11 9 25 25 C 1.53004 * 117.50187 * 132.73676 * 24 12 11 26 26 C 1.53006 * 117.50041 * 64.07435 * 24 12 11 27 27 C 1.38048 * 119.29498 * 359.97438 * 6 5 4 28 28 N 1.31971 * 120.82864 * 0.02562 * 27 6 5 29 29 H 1.08998 * 109.48015 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47256 * 300.00331 * 1 2 3 31 31 H 1.09003 * 109.47223 * 59.99794 * 1 2 3 32 32 H 1.08004 * 120.43967 * 0.28268 * 4 3 2 33 33 H 1.07993 * 120.75713 * 180.02562 * 5 4 3 34 34 H 1.08996 * 109.46974 * 209.99877 * 7 6 5 35 35 H 1.08998 * 109.47020 * 329.99225 * 7 6 5 36 36 H 1.09000 * 109.46934 * 300.00584 * 8 7 6 37 37 H 1.08998 * 109.47218 * 59.99758 * 8 7 6 38 38 H 0.96995 * 119.99957 * 354.98818 * 11 9 8 39 39 H 1.09001 * 109.47011 * 59.99979 * 13 12 11 40 40 H 1.08993 * 109.47207 * 180.02562 * 13 12 11 41 41 H 1.09000 * 109.47083 * 300.00348 * 13 12 11 42 42 H 1.08993 * 109.47125 * 179.97438 * 14 12 11 43 43 H 1.09007 * 109.47091 * 299.99919 * 14 12 11 44 44 H 0.97002 * 120.00294 * 0.02562 * 15 14 12 45 45 H 0.96993 * 120.00038 * 179.97438 * 19 18 16 46 46 H 1.09004 * 115.55317 * 278.41319 * 24 12 11 47 47 H 1.09004 * 117.49310 * 0.02562 * 25 24 12 48 48 H 1.08995 * 117.49766 * 145.02195 * 25 24 12 49 49 H 1.08997 * 117.50385 * 214.97548 * 26 24 12 50 50 H 1.09000 * 117.49457 * 0.02562 * 26 24 12 51 51 H 1.07999 * 119.58655 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2738 0.0005 5 6 4.0486 2.5130 0.0000 6 6 3.2506 3.6490 -0.0005 7 6 3.8770 5.0197 -0.0017 8 6 4.0886 5.4826 -1.4445 9 6 4.7155 6.8529 -1.4456 10 8 4.9678 7.4053 -0.3958 11 7 4.9949 7.4653 -2.6134 12 6 5.5018 8.8397 -2.6167 13 6 4.5290 9.7440 -1.8573 14 6 6.8719 8.8798 -1.9369 15 7 7.8034 8.0138 -2.6640 16 6 9.0984 7.8894 -2.2365 17 1 9.4331 8.4300 -1.3635 18 6 9.9811 7.0694 -2.9258 19 7 11.2259 6.9502 -2.5152 20 14 9.4023 6.1349 -4.4362 21 1 9.6197 6.9674 -5.6466 22 1 10.1709 4.8703 -4.5606 23 1 7.9563 5.8244 -4.3022 24 6 5.6341 9.3310 -4.0597 25 6 5.0703 10.7146 -4.3895 26 6 4.3509 9.4569 -4.8835 27 6 1.8771 3.5097 -0.0010 28 7 1.3186 2.3140 -0.0005 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 4.0228 0.3693 -0.0036 33 1 5.1254 2.5944 0.0000 34 1 3.2187 5.7204 0.5118 35 1 4.8375 4.9806 0.5119 36 1 4.7468 4.7818 -1.9581 37 1 3.1280 5.5216 -1.9582 38 1 4.8604 6.9959 -3.4515 39 1 4.4348 9.3941 -0.8293 40 1 4.9060 10.7667 -1.8602 41 1 3.5530 9.7156 -2.3417 42 1 7.2492 9.9023 -1.9398 43 1 6.7777 8.5297 -0.9088 44 1 7.5028 7.5286 -3.4484 45 1 11.8426 6.3769 -2.9966 46 1 6.5386 9.0185 -4.5817 47 1 4.6056 11.2751 -3.5782 48 1 5.6037 11.3122 -5.1286 49 1 4.4113 9.2279 -5.9474 50 1 3.4125 9.1902 -4.3973 51 1 1.2519 4.3902 -0.0019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666012198.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:50 Heat of formation + Delta-G solvation = -23.061117 kcal Electronic energy + Delta-G solvation = -30648.535155 eV Core-core repulsion = 26548.688370 eV Total energy + Delta-G solvation = -4099.846785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.69300 -41.32375 -39.30037 -38.83766 -36.51383 -35.18008 -34.92186 -33.40248 -33.14738 -31.70232 -30.28161 -28.20267 -27.78176 -25.98327 -24.79311 -24.36246 -23.84189 -23.13257 -22.56322 -20.99992 -20.29079 -19.64945 -19.38184 -18.34113 -18.11936 -17.05063 -16.97962 -16.68069 -16.57209 -16.31326 -15.95991 -15.49009 -15.36614 -15.29323 -15.19753 -14.80998 -14.55656 -14.31621 -14.21378 -14.00667 -13.84987 -13.67887 -13.42346 -13.20860 -13.08112 -12.88446 -12.84663 -12.52033 -12.31105 -12.25229 -12.05665 -12.04419 -11.97715 -11.93338 -11.82409 -11.24388 -11.08680 -10.95108 -10.86770 -10.63305 -10.44887 -9.90030 -9.36555 -9.25145 -8.02527 -5.35125 0.14128 0.25661 1.31957 1.38870 1.46312 1.82568 2.14691 2.22849 2.47168 2.75051 3.04269 3.28052 3.35470 3.56057 3.68470 3.75944 3.89246 3.93953 3.99820 4.05590 4.15598 4.19607 4.21379 4.33316 4.35503 4.42124 4.43333 4.46983 4.62380 4.71256 4.74871 4.76676 4.80723 4.87795 4.92255 4.95398 4.99213 5.01802 5.04920 5.12665 5.20767 5.30303 5.34057 5.40833 5.44606 5.49118 5.71393 5.76828 6.20529 6.23413 6.74800 6.82352 7.07889 7.45445 7.82589 8.06740 9.19812 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009960 B = 0.002735 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.648324 B =10234.758046 C =11879.534106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.295 3.705 4 C -0.193 4.193 5 C -0.041 4.041 6 C -0.164 4.164 7 C -0.047 4.047 8 C -0.127 4.127 9 C 0.511 3.489 10 O -0.570 6.570 11 N -0.712 5.712 12 C 0.209 3.791 13 C -0.154 4.154 14 C 0.149 3.851 15 N -0.743 5.743 16 C -0.231 4.231 17 H 0.044 0.956 18 C -0.068 4.068 19 N -0.987 5.987 20 Si 0.959 3.041 21 H -0.276 1.276 22 H -0.296 1.296 23 H -0.246 1.246 24 C -0.182 4.182 25 C -0.167 4.167 26 C -0.151 4.151 27 C 0.140 3.860 28 N -0.552 5.552 29 H 0.120 0.880 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.408 0.592 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.020 0.980 43 H 0.023 0.977 44 H 0.367 0.633 45 H 0.257 0.743 46 H 0.090 0.910 47 H 0.111 0.889 48 H 0.098 0.902 49 H 0.106 0.894 50 H 0.109 0.891 51 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.151 -6.608 -2.187 28.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.231 6.231 3 C 0.117 3.883 4 C -0.213 4.213 5 C -0.066 4.066 6 C -0.167 4.167 7 C -0.085 4.085 8 C -0.167 4.167 9 C 0.299 3.701 10 O -0.449 6.449 11 N -0.363 5.363 12 C 0.123 3.877 13 C -0.212 4.212 14 C 0.021 3.979 15 N -0.389 5.389 16 C -0.362 4.362 17 H 0.062 0.938 18 C -0.259 4.259 19 N -0.638 5.638 20 Si 0.785 3.215 21 H -0.202 1.202 22 H -0.223 1.223 23 H -0.170 1.170 24 C -0.201 4.201 25 C -0.205 4.205 26 C -0.188 4.188 27 C -0.016 4.016 28 N -0.275 5.275 29 H 0.138 0.862 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.141 0.859 38 H 0.244 0.756 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.037 0.963 43 H 0.041 0.959 44 H 0.201 0.799 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.129 0.871 48 H 0.116 0.884 49 H 0.124 0.876 50 H 0.128 0.872 51 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -27.650 -6.523 -1.297 28.439 hybrid contribution 1.525 -0.617 -0.842 1.848 sum -26.125 -7.141 -2.139 27.167 Atomic orbital electron populations 1.23028 0.75954 1.04513 1.02202 1.86215 1.24311 1.24600 1.87954 1.20104 0.89995 0.84989 0.93253 1.21273 0.91919 1.00267 1.07880 1.21626 1.01504 0.90750 0.92762 1.20729 0.94807 0.96118 1.04998 1.20047 1.01206 0.91649 0.95614 1.21675 1.03438 0.92362 0.99233 1.21114 0.77467 0.88267 0.83250 1.90648 1.53961 1.67601 1.32737 1.46001 1.66344 1.14868 1.09096 1.19818 0.91888 0.82217 0.93810 1.22181 0.98782 0.99075 1.01181 1.21098 0.88857 0.92875 0.95048 1.42443 1.07760 1.55315 1.33354 1.18987 0.86949 1.21608 1.08641 0.93789 1.25555 0.95579 1.01693 1.03030 1.69910 1.05630 1.44360 1.43916 0.85357 0.78836 0.77855 0.79431 1.20239 1.22278 1.16989 1.22321 0.99248 1.03786 0.94705 1.23197 1.03265 0.90149 1.03844 1.23053 0.94806 1.00881 1.00044 1.22676 0.92491 0.93847 0.92562 1.67350 1.41242 0.99165 1.19765 0.86169 0.92610 0.92477 0.82962 0.83019 0.89666 0.91817 0.88454 0.85935 0.75588 0.92087 0.90908 0.90189 0.96250 0.95857 0.79912 0.93387 0.89215 0.87129 0.88352 0.87557 0.87235 0.80166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.38 113.37 1.18 1.70 16 2 O -0.32 -6.56 10.48 -89.90 -0.94 -7.51 16 3 C 0.29 6.38 7.49 84.79 0.63 7.01 16 4 C -0.19 -3.77 10.04 22.47 0.23 -3.54 16 5 C -0.04 -0.78 9.85 22.44 0.22 -0.55 16 6 C -0.16 -3.02 5.15 -19.77 -0.10 -3.12 16 7 C -0.05 -0.93 4.66 29.85 0.14 -0.79 16 8 C -0.13 -2.41 5.68 29.85 0.17 -2.24 16 9 C 0.51 14.02 7.24 87.65 0.63 14.66 16 10 O -0.57 -20.32 12.22 -3.01 -0.04 -20.36 16 11 N -0.71 -18.17 4.73 -422.93 -2.00 -20.16 16 12 C 0.21 6.02 0.54 3.60 0.00 6.02 16 13 C -0.15 -3.83 6.98 71.98 0.50 -3.33 16 14 C 0.15 6.14 5.03 86.38 0.43 6.58 16 15 N -0.74 -35.38 4.84 -343.45 -1.66 -37.04 16 16 C -0.23 -13.70 10.47 84.03 0.88 -12.82 16 17 H 0.04 2.94 8.06 -2.91 -0.02 2.92 16 18 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 19 N -0.99 -64.71 13.97 21.65 0.30 -64.41 16 20 Si 0.96 45.07 27.73 68.60 1.90 46.97 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 23 H -0.25 -10.03 6.52 99.48 0.65 -9.38 16 24 C -0.18 -4.54 4.84 -10.79 -0.05 -4.59 16 25 C -0.17 -3.27 9.64 30.62 0.30 -2.97 16 26 C -0.15 -2.52 9.82 30.62 0.30 -2.22 16 27 C 0.14 2.48 10.85 84.63 0.92 3.40 16 28 N -0.55 -11.61 9.22 -308.95 -2.85 -14.46 16 29 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.79 8.10 -2.38 -0.02 0.77 16 31 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 32 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 33 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.08 1.65 8.05 -2.39 -0.02 1.63 16 35 H 0.06 1.56 8.05 -2.39 -0.02 1.54 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.41 8.31 8.48 -92.71 -0.79 7.53 16 39 H 0.06 1.82 6.03 -2.39 -0.01 1.80 16 40 H 0.07 1.70 6.78 -2.39 -0.02 1.68 16 41 H 0.08 1.55 6.99 -2.39 -0.02 1.53 16 42 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.02 1.11 6.32 -2.38 -0.02 1.10 16 44 H 0.37 16.07 4.48 -92.71 -0.42 15.65 16 45 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 46 H 0.09 2.74 7.08 -2.38 -0.02 2.72 16 47 H 0.11 1.96 5.88 -2.38 -0.01 1.95 16 48 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.11 1.52 7.35 -2.39 -0.02 1.51 16 51 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -79.36 409.18 1.26 -78.10 By element: Atomic # 1 Polarization: 39.60 SS G_CDS: -0.31 Total: 39.29 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 6.85 Total: -0.42 kcal Atomic # 7 Polarization: -129.87 SS G_CDS: -6.21 Total: -136.08 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.98 Total: -27.86 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.90 Total: 46.97 kcal Total: -79.36 1.26 -78.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666012198.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.038 kcal (2) G-P(sol) polarization free energy of solvation -79.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds