Wall clock time and date at job start Wed Apr 1 2020 05:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35672 * 116.99860 * 2 1 4 4 C 1.38921 * 119.68185 * 179.97438 * 3 2 1 5 5 C 1.38377 * 119.11101 * 179.97438 * 4 3 2 6 6 C 1.38834 * 118.48589 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.35344 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47070 * 90.00250 * 7 6 5 9 9 C 1.50697 * 109.47059 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00397 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99935 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00315 * 175.57135 * 11 9 8 13 13 C 1.53000 * 109.47451 * 174.06199 * 12 11 9 14 14 C 1.53002 * 109.46956 * 54.06233 * 12 11 9 15 15 N 1.46498 * 109.47443 * 59.99903 * 14 12 11 16 16 C 1.36937 * 120.00424 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99690 * 0.02562 * 16 15 14 18 18 C 1.38805 * 119.99872 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99667 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00464 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47115 * 89.99681 * 20 18 16 22 22 H 1.48498 * 109.47398 * 210.00124 * 20 18 16 23 23 H 1.48504 * 109.46970 * 330.00037 * 20 18 16 24 24 C 1.52998 * 109.47166 * 294.06484 * 12 11 9 25 25 C 1.53000 * 117.50241 * 2.15349 * 24 12 11 26 26 C 1.53002 * 117.49852 * 293.49393 * 24 12 11 27 27 C 1.38042 * 119.28820 * 0.25776 * 6 5 4 28 28 N 1.31969 * 120.83470 * 359.44862 * 27 6 5 29 29 H 1.09003 * 109.47687 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47016 * 300.00291 * 1 2 3 31 31 H 1.08998 * 109.47095 * 60.00352 * 1 2 3 32 32 H 1.08002 * 120.44624 * 0.02562 * 4 3 2 33 33 H 1.08005 * 120.75828 * 180.02562 * 5 4 3 34 34 H 1.09007 * 109.46871 * 209.99874 * 7 6 5 35 35 H 1.08997 * 109.47719 * 330.00233 * 7 6 5 36 36 H 1.08995 * 109.47196 * 299.99901 * 8 7 6 37 37 H 1.09000 * 109.47269 * 60.00091 * 8 7 6 38 38 H 0.96995 * 120.00212 * 355.57984 * 11 9 8 39 39 H 1.08991 * 109.46909 * 60.00174 * 13 12 11 40 40 H 1.09002 * 109.47088 * 180.02562 * 13 12 11 41 41 H 1.09000 * 109.46520 * 299.99866 * 13 12 11 42 42 H 1.09002 * 109.47589 * 180.02562 * 14 12 11 43 43 H 1.09007 * 109.47019 * 300.00127 * 14 12 11 44 44 H 0.97004 * 119.99596 * 359.97438 * 15 14 12 45 45 H 0.97004 * 119.99723 * 179.97438 * 19 18 16 46 46 H 1.09002 * 115.55306 * 147.82794 * 24 12 11 47 47 H 1.08997 * 117.49573 * 0.02562 * 25 24 12 48 48 H 1.08998 * 117.50269 * 145.01829 * 25 24 12 49 49 H 1.09000 * 117.49728 * 214.98456 * 26 24 12 50 50 H 1.08998 * 117.49822 * 359.97438 * 26 24 12 51 51 H 1.07998 * 119.58468 * 179.72700 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2739 0.0005 5 6 4.0485 2.5131 0.0000 6 6 3.2504 3.6491 -0.0016 7 6 3.8768 5.0197 -0.0017 8 6 4.0904 5.4828 -1.4442 9 6 4.7162 6.8537 -1.4443 10 8 4.9671 7.4058 -0.3941 11 7 4.9980 7.4657 -2.6116 12 6 5.5159 8.8361 -2.6138 13 6 5.8893 9.2380 -4.0421 14 6 6.7563 8.9140 -1.7214 15 7 7.7835 8.0029 -2.2322 16 6 8.9891 7.9015 -1.5908 17 1 9.1825 8.4929 -0.7081 18 6 9.9625 7.0387 -2.0752 19 7 11.1215 6.9416 -1.4589 20 14 9.6282 6.0163 -3.6024 21 1 10.0525 6.7733 -4.8075 22 1 10.3903 4.7442 -3.5232 23 1 8.1760 5.7186 -3.6908 24 6 4.4432 9.7876 -2.0802 25 6 3.1208 9.1730 -1.6169 26 6 3.1789 9.9704 -2.9223 27 6 1.8771 3.5097 0.0028 28 7 1.3186 2.3140 -0.0024 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0228 0.3694 0.0005 33 1 5.1254 2.5946 0.0000 34 1 3.2177 5.7204 0.5110 35 1 4.8367 4.9807 0.5132 36 1 4.7494 4.7821 -1.9569 37 1 3.1305 5.5219 -1.9592 38 1 4.8578 6.9990 -3.4502 39 1 5.0057 9.1825 -4.6778 40 1 6.2750 10.2575 -4.0436 41 1 6.6536 8.5601 -4.4221 42 1 7.1414 9.9337 -1.7226 43 1 6.4903 8.6277 -0.7037 44 1 7.6093 7.4710 -3.0244 45 1 11.8016 6.3383 -1.7973 46 1 4.8137 10.6550 -1.5338 47 1 3.0153 8.0908 -1.6920 48 1 2.6212 9.6362 -0.7661 49 1 2.7176 10.9580 -2.9296 50 1 3.1116 9.4132 -3.8566 51 1 1.2517 4.3902 0.0060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666012206.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:55 Heat of formation + Delta-G solvation = 9.118394 kcal Electronic energy + Delta-G solvation = -31021.219842 eV Core-core repulsion = 26922.768465 eV Total energy + Delta-G solvation = -4098.451377 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.89822 -40.39089 -38.36194 -37.38019 -35.13065 -34.18269 -33.39652 -32.40927 -31.57353 -30.22616 -29.43943 -27.52999 -26.33341 -24.89285 -23.66401 -23.50539 -22.21234 -21.91681 -21.13657 -20.31335 -19.14240 -18.63299 -17.75554 -17.34971 -17.06647 -16.24320 -16.16766 -15.44782 -15.18756 -15.03174 -14.71541 -14.49136 -14.44770 -13.98257 -13.80830 -13.63251 -13.48014 -13.23360 -13.03765 -12.84342 -12.45924 -12.23257 -12.22088 -12.14271 -11.96621 -11.74327 -11.56791 -11.32252 -11.26540 -11.11883 -11.01787 -10.87095 -10.82260 -10.19863 -10.18735 -10.07183 -9.93002 -9.82553 -9.54534 -9.32735 -8.75526 -8.66345 -8.55522 -7.09606 -5.70760 -3.03690 0.92305 1.05482 2.85021 2.99161 3.33439 3.34403 3.36713 3.43766 3.57524 3.93000 4.08490 4.57482 4.61453 4.71844 4.74021 4.77637 4.86347 4.96944 4.99796 5.01982 5.04602 5.06890 5.12435 5.23451 5.30631 5.34775 5.44023 5.45640 5.54214 5.58201 5.62039 5.68063 5.72275 5.72762 5.82050 5.90592 6.05229 6.06725 6.11561 6.18690 6.22382 6.26787 6.27476 6.40477 6.53828 6.87692 6.98202 7.13406 7.60971 7.82537 8.08032 8.48279 8.60206 9.28565 10.00653 10.21782 11.48459 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009490 B = 0.003018 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.673038 B = 9275.701643 C =11402.662680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.311 6.311 3 C 0.310 3.690 4 C -0.186 4.186 5 C -0.036 4.036 6 C -0.165 4.165 7 C -0.055 4.055 8 C -0.138 4.138 9 C 0.519 3.481 10 O -0.516 6.516 11 N -0.724 5.724 12 C 0.196 3.804 13 C -0.149 4.149 14 C 0.143 3.857 15 N -0.749 5.749 16 C -0.230 4.230 17 H 0.089 0.911 18 C -0.001 4.001 19 N -0.937 5.937 20 Si 0.883 3.117 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.281 1.281 24 C -0.143 4.143 25 C -0.163 4.163 26 C -0.183 4.183 27 C 0.140 3.860 28 N -0.540 5.540 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.393 0.607 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.027 0.973 43 H 0.067 0.933 44 H 0.357 0.643 45 H 0.257 0.743 46 H 0.109 0.891 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.089 0.911 51 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.767 -6.322 -2.180 24.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.218 6.218 3 C 0.131 3.869 4 C -0.207 4.207 5 C -0.061 4.061 6 C -0.167 4.167 7 C -0.093 4.093 8 C -0.178 4.178 9 C 0.306 3.694 10 O -0.391 6.391 11 N -0.375 5.375 12 C 0.110 3.890 13 C -0.206 4.206 14 C 0.015 3.985 15 N -0.395 5.395 16 C -0.360 4.360 17 H 0.107 0.893 18 C -0.195 4.195 19 N -0.587 5.587 20 Si 0.714 3.286 21 H -0.213 1.213 22 H -0.219 1.219 23 H -0.207 1.207 24 C -0.162 4.162 25 C -0.200 4.200 26 C -0.220 4.220 27 C -0.015 4.015 28 N -0.263 5.263 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.226 0.774 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.085 0.915 44 H 0.190 0.810 45 H 0.068 0.932 46 H 0.127 0.873 47 H 0.110 0.890 48 H 0.106 0.894 49 H 0.107 0.893 50 H 0.108 0.892 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -24.224 -6.230 -1.241 25.043 hybrid contribution 0.540 -0.922 -1.607 1.930 sum -23.684 -7.153 -2.848 24.904 Atomic orbital electron populations 1.22831 0.77370 1.02794 1.02414 1.86232 1.22816 1.24718 1.88018 1.19846 0.89455 0.84664 0.92938 1.21093 0.91953 0.99660 1.07950 1.21471 1.01007 0.90690 0.92971 1.20810 0.94646 0.96660 1.04594 1.20184 1.02367 0.91156 0.95638 1.21702 1.01996 0.95159 0.98966 1.20271 0.78155 0.87002 0.84008 1.90682 1.51195 1.66133 1.31119 1.46070 1.67449 1.15595 1.08433 1.20107 0.92710 0.79918 0.96271 1.22001 1.01178 1.03105 0.94355 1.21185 0.85812 0.93783 0.97678 1.42596 1.14237 1.49836 1.32850 1.19072 0.88821 1.19759 1.08329 0.89342 1.24640 0.96152 0.99957 0.98792 1.69702 1.05711 1.41583 1.41660 0.86568 0.76959 0.80551 0.84513 1.21276 1.21891 1.20733 1.22544 0.89094 1.01262 1.03321 1.22915 1.00368 0.99530 0.97170 1.22963 1.02227 1.01428 0.95413 1.22310 0.92283 0.93495 0.93437 1.67305 1.40907 0.98799 1.19274 0.88764 0.92365 0.92369 0.84114 0.83724 0.89887 0.89454 0.89040 0.89397 0.77371 0.92677 0.90677 0.91650 0.95528 0.91506 0.81021 0.93244 0.87254 0.89023 0.89430 0.89304 0.89215 0.82432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.37 16 2 O -0.31 -3.36 10.48 -18.72 -0.20 -3.55 16 3 C 0.31 3.57 7.49 -17.12 -0.13 3.44 16 4 C -0.19 -1.95 10.04 -39.28 -0.39 -2.35 16 5 C -0.04 -0.37 9.85 -39.31 -0.39 -0.76 16 6 C -0.16 -1.69 5.15 -104.48 -0.54 -2.23 16 7 C -0.06 -0.60 4.66 -27.88 -0.13 -0.73 16 8 C -0.14 -1.50 5.68 -27.88 -0.16 -1.66 16 9 C 0.52 7.49 4.86 -10.99 -0.05 7.44 16 10 O -0.52 -9.30 12.32 5.56 0.07 -9.23 16 11 N -0.72 -9.77 4.17 -47.61 -0.20 -9.97 16 12 C 0.20 2.91 0.55 -131.82 -0.07 2.83 16 13 C -0.15 -1.97 8.18 37.16 0.30 -1.67 16 14 C 0.14 2.87 4.81 -4.04 -0.02 2.85 16 15 N -0.75 -17.73 4.98 -59.91 -0.30 -18.03 16 16 C -0.23 -6.61 10.47 -15.06 -0.16 -6.77 16 17 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 18 C 0.00 -0.02 5.50 -17.43 -0.10 -0.11 16 19 N -0.94 -29.87 13.97 55.49 0.78 -29.09 16 20 Si 0.88 22.04 27.74 -169.99 -4.71 17.32 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 24 C -0.14 -1.87 4.89 -90.62 -0.44 -2.31 16 25 C -0.16 -1.95 8.62 -26.69 -0.23 -2.18 16 26 C -0.18 -1.92 9.68 -26.69 -0.26 -2.18 16 27 C 0.14 1.41 10.85 -17.56 -0.19 1.22 16 28 N -0.54 -6.17 9.22 -13.33 -0.12 -6.29 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 31 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 32 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.08 0.88 8.05 -51.92 -0.42 0.47 16 35 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.39 4.36 8.48 -40.82 -0.35 4.01 16 39 H 0.05 0.58 6.91 -51.93 -0.36 0.22 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.97 6.86 -51.93 -0.36 0.62 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 1.51 5.63 -51.92 -0.29 1.22 16 44 H 0.36 8.09 4.21 -40.82 -0.17 7.92 16 45 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 46 H 0.11 1.48 8.06 -51.93 -0.42 1.06 16 47 H 0.09 1.11 5.21 -51.93 -0.27 0.83 16 48 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 49 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.09 0.87 7.20 -51.93 -0.37 0.50 16 51 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 407.69 15.07 6.14 6.14 Total: -1.00 -35.11 407.69 -8.53 -43.64 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -8.09 Total: 12.85 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.90 Total: -3.78 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: 0.16 Total: -63.39 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.13 Total: -12.78 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.11 -8.53 -43.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666012206.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.758 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds