Wall clock time and date at job start Wed Apr 1 2020 05:33:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35672 * 116.99860 * 2 1
4 4 C 1.38921 * 119.68185 * 179.97438 * 3 2 1
5 5 C 1.38377 * 119.11101 * 179.97438 * 4 3 2
6 6 C 1.38834 * 118.48589 * 359.97438 * 5 4 3
7 7 C 1.50696 * 120.35344 * 179.97438 * 6 5 4
8 8 C 1.53001 * 109.47070 * 90.00250 * 7 6 5
9 9 C 1.50697 * 109.47059 * 179.97438 * 8 7 6
10 10 O 1.21277 * 120.00397 * 0.02562 * 9 8 7
11 11 N 1.34779 * 119.99935 * 179.97438 * 9 8 7
12 12 C 1.46498 * 120.00315 * 175.57135 * 11 9 8
13 13 C 1.53000 * 109.47451 * 174.06199 * 12 11 9
14 14 C 1.53002 * 109.46956 * 54.06233 * 12 11 9
15 15 N 1.46498 * 109.47443 * 59.99903 * 14 12 11
16 16 C 1.36937 * 120.00424 * 180.02562 * 15 14 12
17 17 H 1.07996 * 119.99690 * 0.02562 * 16 15 14
18 18 C 1.38805 * 119.99872 * 180.02562 * 16 15 14
19 19 N 1.31624 * 119.99667 * 179.97438 * 18 16 15
20 20 Si 1.86799 * 120.00464 * 0.02562 * 18 16 15
21 21 H 1.48498 * 109.47115 * 89.99681 * 20 18 16
22 22 H 1.48498 * 109.47398 * 210.00124 * 20 18 16
23 23 H 1.48504 * 109.46970 * 330.00037 * 20 18 16
24 24 C 1.52998 * 109.47166 * 294.06484 * 12 11 9
25 25 C 1.53000 * 117.50241 * 2.15349 * 24 12 11
26 26 C 1.53002 * 117.49852 * 293.49393 * 24 12 11
27 27 C 1.38042 * 119.28820 * 0.25776 * 6 5 4
28 28 N 1.31969 * 120.83470 * 359.44862 * 27 6 5
29 29 H 1.09003 * 109.47687 * 180.02562 * 1 2 3
30 30 H 1.09004 * 109.47016 * 300.00291 * 1 2 3
31 31 H 1.08998 * 109.47095 * 60.00352 * 1 2 3
32 32 H 1.08002 * 120.44624 * 0.02562 * 4 3 2
33 33 H 1.08005 * 120.75828 * 180.02562 * 5 4 3
34 34 H 1.09007 * 109.46871 * 209.99874 * 7 6 5
35 35 H 1.08997 * 109.47719 * 330.00233 * 7 6 5
36 36 H 1.08995 * 109.47196 * 299.99901 * 8 7 6
37 37 H 1.09000 * 109.47269 * 60.00091 * 8 7 6
38 38 H 0.96995 * 120.00212 * 355.57984 * 11 9 8
39 39 H 1.08991 * 109.46909 * 60.00174 * 13 12 11
40 40 H 1.09002 * 109.47088 * 180.02562 * 13 12 11
41 41 H 1.09000 * 109.46520 * 299.99866 * 13 12 11
42 42 H 1.09002 * 109.47589 * 180.02562 * 14 12 11
43 43 H 1.09007 * 109.47019 * 300.00127 * 14 12 11
44 44 H 0.97004 * 119.99596 * 359.97438 * 15 14 12
45 45 H 0.97004 * 119.99723 * 179.97438 * 19 18 16
46 46 H 1.09002 * 115.55306 * 147.82794 * 24 12 11
47 47 H 1.08997 * 117.49573 * 0.02562 * 25 24 12
48 48 H 1.08998 * 117.50269 * 145.01829 * 25 24 12
49 49 H 1.09000 * 117.49728 * 214.98456 * 26 24 12
50 50 H 1.08998 * 117.49822 * 359.97438 * 26 24 12
51 51 H 1.07998 * 119.58468 * 179.72700 * 27 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2089 0.0000
4 6 3.4326 1.2739 0.0005
5 6 4.0485 2.5131 0.0000
6 6 3.2504 3.6491 -0.0016
7 6 3.8768 5.0197 -0.0017
8 6 4.0904 5.4828 -1.4442
9 6 4.7162 6.8537 -1.4443
10 8 4.9671 7.4058 -0.3941
11 7 4.9980 7.4657 -2.6116
12 6 5.5159 8.8361 -2.6138
13 6 5.8893 9.2380 -4.0421
14 6 6.7563 8.9140 -1.7214
15 7 7.7835 8.0029 -2.2322
16 6 8.9891 7.9015 -1.5908
17 1 9.1825 8.4929 -0.7081
18 6 9.9625 7.0387 -2.0752
19 7 11.1215 6.9416 -1.4589
20 14 9.6282 6.0163 -3.6024
21 1 10.0525 6.7733 -4.8075
22 1 10.3903 4.7442 -3.5232
23 1 8.1760 5.7186 -3.6908
24 6 4.4432 9.7876 -2.0802
25 6 3.1208 9.1730 -1.6169
26 6 3.1789 9.9704 -2.9223
27 6 1.8771 3.5097 0.0028
28 7 1.3186 2.3140 -0.0024
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 4.0228 0.3694 0.0005
33 1 5.1254 2.5946 0.0000
34 1 3.2177 5.7204 0.5110
35 1 4.8367 4.9807 0.5132
36 1 4.7494 4.7821 -1.9569
37 1 3.1305 5.5219 -1.9592
38 1 4.8578 6.9990 -3.4502
39 1 5.0057 9.1825 -4.6778
40 1 6.2750 10.2575 -4.0436
41 1 6.6536 8.5601 -4.4221
42 1 7.1414 9.9337 -1.7226
43 1 6.4903 8.6277 -0.7037
44 1 7.6093 7.4710 -3.0244
45 1 11.8016 6.3383 -1.7973
46 1 4.8137 10.6550 -1.5338
47 1 3.0153 8.0908 -1.6920
48 1 2.6212 9.6362 -0.7661
49 1 2.7176 10.9580 -2.9296
50 1 3.1116 9.4132 -3.8566
51 1 1.2517 4.3902 0.0060
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001666012206.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:33:55
Heat of formation + Delta-G solvation = 9.118394 kcal
Electronic energy + Delta-G solvation = -31021.219842 eV
Core-core repulsion = 26922.768465 eV
Total energy + Delta-G solvation = -4098.451377 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-40.89822 -40.39089 -38.36194 -37.38019 -35.13065 -34.18269 -33.39652 -32.40927
-31.57353 -30.22616 -29.43943 -27.52999 -26.33341 -24.89285 -23.66401 -23.50539
-22.21234 -21.91681 -21.13657 -20.31335 -19.14240 -18.63299 -17.75554 -17.34971
-17.06647 -16.24320 -16.16766 -15.44782 -15.18756 -15.03174 -14.71541 -14.49136
-14.44770 -13.98257 -13.80830 -13.63251 -13.48014 -13.23360 -13.03765 -12.84342
-12.45924 -12.23257 -12.22088 -12.14271 -11.96621 -11.74327 -11.56791 -11.32252
-11.26540 -11.11883 -11.01787 -10.87095 -10.82260 -10.19863 -10.18735 -10.07183
-9.93002 -9.82553 -9.54534 -9.32735 -8.75526 -8.66345 -8.55522 -7.09606
-5.70760 -3.03690 0.92305 1.05482 2.85021 2.99161 3.33439 3.34403
3.36713 3.43766 3.57524 3.93000 4.08490 4.57482 4.61453 4.71844
4.74021 4.77637 4.86347 4.96944 4.99796 5.01982 5.04602 5.06890
5.12435 5.23451 5.30631 5.34775 5.44023 5.45640 5.54214 5.58201
5.62039 5.68063 5.72275 5.72762 5.82050 5.90592 6.05229 6.06725
6.11561 6.18690 6.22382 6.26787 6.27476 6.40477 6.53828 6.87692
6.98202 7.13406 7.60971 7.82537 8.08032 8.48279 8.60206 9.28565
10.00653 10.21782 11.48459
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.009490 B = 0.003018 C = 0.002455
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2949.673038 B = 9275.701643 C =11402.662680
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.041 3.959
2 O -0.311 6.311
3 C 0.310 3.690
4 C -0.186 4.186
5 C -0.036 4.036
6 C -0.165 4.165
7 C -0.055 4.055
8 C -0.138 4.138
9 C 0.519 3.481
10 O -0.516 6.516
11 N -0.724 5.724
12 C 0.196 3.804
13 C -0.149 4.149
14 C 0.143 3.857
15 N -0.749 5.749
16 C -0.230 4.230
17 H 0.089 0.911
18 C -0.001 4.001
19 N -0.937 5.937
20 Si 0.883 3.117
21 H -0.286 1.286
22 H -0.292 1.292
23 H -0.281 1.281
24 C -0.143 4.143
25 C -0.163 4.163
26 C -0.183 4.183
27 C 0.140 3.860
28 N -0.540 5.540
29 H 0.094 0.906
30 H 0.058 0.942
31 H 0.058 0.942
32 H 0.141 0.859
33 H 0.145 0.855
34 H 0.083 0.917
35 H 0.087 0.913
36 H 0.091 0.909
37 H 0.088 0.912
38 H 0.393 0.607
39 H 0.054 0.946
40 H 0.074 0.926
41 H 0.065 0.935
42 H 0.027 0.973
43 H 0.067 0.933
44 H 0.357 0.643
45 H 0.257 0.743
46 H 0.109 0.891
47 H 0.092 0.908
48 H 0.087 0.913
49 H 0.088 0.912
50 H 0.089 0.911
51 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.767 -6.322 -2.180 24.690
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 O -0.218 6.218
3 C 0.131 3.869
4 C -0.207 4.207
5 C -0.061 4.061
6 C -0.167 4.167
7 C -0.093 4.093
8 C -0.178 4.178
9 C 0.306 3.694
10 O -0.391 6.391
11 N -0.375 5.375
12 C 0.110 3.890
13 C -0.206 4.206
14 C 0.015 3.985
15 N -0.395 5.395
16 C -0.360 4.360
17 H 0.107 0.893
18 C -0.195 4.195
19 N -0.587 5.587
20 Si 0.714 3.286
21 H -0.213 1.213
22 H -0.219 1.219
23 H -0.207 1.207
24 C -0.162 4.162
25 C -0.200 4.200
26 C -0.220 4.220
27 C -0.015 4.015
28 N -0.263 5.263
29 H 0.112 0.888
30 H 0.076 0.924
31 H 0.076 0.924
32 H 0.159 0.841
33 H 0.163 0.837
34 H 0.101 0.899
35 H 0.105 0.895
36 H 0.110 0.890
37 H 0.106 0.894
38 H 0.226 0.774
39 H 0.073 0.927
40 H 0.093 0.907
41 H 0.084 0.916
42 H 0.045 0.955
43 H 0.085 0.915
44 H 0.190 0.810
45 H 0.068 0.932
46 H 0.127 0.873
47 H 0.110 0.890
48 H 0.106 0.894
49 H 0.107 0.893
50 H 0.108 0.892
51 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -24.224 -6.230 -1.241 25.043
hybrid contribution 0.540 -0.922 -1.607 1.930
sum -23.684 -7.153 -2.848 24.904
Atomic orbital electron populations
1.22831 0.77370 1.02794 1.02414 1.86232 1.22816 1.24718 1.88018
1.19846 0.89455 0.84664 0.92938 1.21093 0.91953 0.99660 1.07950
1.21471 1.01007 0.90690 0.92971 1.20810 0.94646 0.96660 1.04594
1.20184 1.02367 0.91156 0.95638 1.21702 1.01996 0.95159 0.98966
1.20271 0.78155 0.87002 0.84008 1.90682 1.51195 1.66133 1.31119
1.46070 1.67449 1.15595 1.08433 1.20107 0.92710 0.79918 0.96271
1.22001 1.01178 1.03105 0.94355 1.21185 0.85812 0.93783 0.97678
1.42596 1.14237 1.49836 1.32850 1.19072 0.88821 1.19759 1.08329
0.89342 1.24640 0.96152 0.99957 0.98792 1.69702 1.05711 1.41583
1.41660 0.86568 0.76959 0.80551 0.84513 1.21276 1.21891 1.20733
1.22544 0.89094 1.01262 1.03321 1.22915 1.00368 0.99530 0.97170
1.22963 1.02227 1.01428 0.95413 1.22310 0.92283 0.93495 0.93437
1.67305 1.40907 0.98799 1.19274 0.88764 0.92365 0.92369 0.84114
0.83724 0.89887 0.89454 0.89040 0.89397 0.77371 0.92677 0.90677
0.91650 0.95528 0.91506 0.81021 0.93244 0.87254 0.89023 0.89430
0.89304 0.89215 0.82432
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.32 10.38 101.05 1.05 1.37 16
2 O -0.31 -3.36 10.48 -18.72 -0.20 -3.55 16
3 C 0.31 3.57 7.49 -17.12 -0.13 3.44 16
4 C -0.19 -1.95 10.04 -39.28 -0.39 -2.35 16
5 C -0.04 -0.37 9.85 -39.31 -0.39 -0.76 16
6 C -0.16 -1.69 5.15 -104.48 -0.54 -2.23 16
7 C -0.06 -0.60 4.66 -27.88 -0.13 -0.73 16
8 C -0.14 -1.50 5.68 -27.88 -0.16 -1.66 16
9 C 0.52 7.49 4.86 -10.99 -0.05 7.44 16
10 O -0.52 -9.30 12.32 5.56 0.07 -9.23 16
11 N -0.72 -9.77 4.17 -47.61 -0.20 -9.97 16
12 C 0.20 2.91 0.55 -131.82 -0.07 2.83 16
13 C -0.15 -1.97 8.18 37.16 0.30 -1.67 16
14 C 0.14 2.87 4.81 -4.04 -0.02 2.85 16
15 N -0.75 -17.73 4.98 -59.91 -0.30 -18.03 16
16 C -0.23 -6.61 10.47 -15.06 -0.16 -6.77 16
17 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16
18 C 0.00 -0.02 5.50 -17.43 -0.10 -0.11 16
19 N -0.94 -29.87 13.97 55.49 0.78 -29.09 16
20 Si 0.88 22.04 27.74 -169.99 -4.71 17.32 16
21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
22 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16
23 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16
24 C -0.14 -1.87 4.89 -90.62 -0.44 -2.31 16
25 C -0.16 -1.95 8.62 -26.69 -0.23 -2.18 16
26 C -0.18 -1.92 9.68 -26.69 -0.26 -2.18 16
27 C 0.14 1.41 10.85 -17.56 -0.19 1.22 16
28 N -0.54 -6.17 9.22 -13.33 -0.12 -6.29 16
29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16
30 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16
31 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16
32 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16
33 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16
34 H 0.08 0.88 8.05 -51.92 -0.42 0.47 16
35 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16
36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16
37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16
38 H 0.39 4.36 8.48 -40.82 -0.35 4.01 16
39 H 0.05 0.58 6.91 -51.93 -0.36 0.22 16
40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16
41 H 0.06 0.97 6.86 -51.93 -0.36 0.62 16
42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
43 H 0.07 1.51 5.63 -51.92 -0.29 1.22 16
44 H 0.36 8.09 4.21 -40.82 -0.17 7.92 16
45 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16
46 H 0.11 1.48 8.06 -51.93 -0.42 1.06 16
47 H 0.09 1.11 5.21 -51.93 -0.27 0.83 16
48 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16
49 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16
50 H 0.09 0.87 7.20 -51.93 -0.37 0.50 16
51 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16
LS Contribution 407.69 15.07 6.14 6.14
Total: -1.00 -35.11 407.69 -8.53 -43.64
By element:
Atomic # 1 Polarization: 20.93 SS G_CDS: -8.09 Total: 12.85 kcal
Atomic # 6 Polarization: -1.88 SS G_CDS: -1.90 Total: -3.78 kcal
Atomic # 7 Polarization: -63.54 SS G_CDS: 0.16 Total: -63.39 kcal
Atomic # 8 Polarization: -12.66 SS G_CDS: -0.13 Total: -12.78 kcal
Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.32 kcal
Total LS contribution 6.14 Total: 6.14 kcal
Total: -35.11 -8.53 -43.64 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001666012206.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.758 kcal
(2) G-P(sol) polarization free energy of solvation -35.106 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.652 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.639 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.118 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds