Wall clock time and date at job start Wed Apr 1 2020 05:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35672 * 116.99860 * 2 1 4 4 C 1.38921 * 119.68185 * 179.97438 * 3 2 1 5 5 C 1.38377 * 119.11101 * 179.97438 * 4 3 2 6 6 C 1.38834 * 118.48589 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.35344 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47070 * 90.00250 * 7 6 5 9 9 C 1.50697 * 109.47059 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00397 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99935 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00315 * 175.57135 * 11 9 8 13 13 C 1.53000 * 109.47451 * 174.06199 * 12 11 9 14 14 C 1.53002 * 109.46956 * 54.06233 * 12 11 9 15 15 N 1.46498 * 109.47443 * 59.99903 * 14 12 11 16 16 C 1.36937 * 120.00424 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99690 * 0.02562 * 16 15 14 18 18 C 1.38805 * 119.99872 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99667 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00464 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47115 * 89.99681 * 20 18 16 22 22 H 1.48498 * 109.47398 * 210.00124 * 20 18 16 23 23 H 1.48504 * 109.46970 * 330.00037 * 20 18 16 24 24 C 1.52998 * 109.47166 * 294.06484 * 12 11 9 25 25 C 1.53000 * 117.50241 * 2.15349 * 24 12 11 26 26 C 1.53002 * 117.49852 * 293.49393 * 24 12 11 27 27 C 1.38042 * 119.28820 * 0.25776 * 6 5 4 28 28 N 1.31969 * 120.83470 * 359.44862 * 27 6 5 29 29 H 1.09003 * 109.47687 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47016 * 300.00291 * 1 2 3 31 31 H 1.08998 * 109.47095 * 60.00352 * 1 2 3 32 32 H 1.08002 * 120.44624 * 0.02562 * 4 3 2 33 33 H 1.08005 * 120.75828 * 180.02562 * 5 4 3 34 34 H 1.09007 * 109.46871 * 209.99874 * 7 6 5 35 35 H 1.08997 * 109.47719 * 330.00233 * 7 6 5 36 36 H 1.08995 * 109.47196 * 299.99901 * 8 7 6 37 37 H 1.09000 * 109.47269 * 60.00091 * 8 7 6 38 38 H 0.96995 * 120.00212 * 355.57984 * 11 9 8 39 39 H 1.08991 * 109.46909 * 60.00174 * 13 12 11 40 40 H 1.09002 * 109.47088 * 180.02562 * 13 12 11 41 41 H 1.09000 * 109.46520 * 299.99866 * 13 12 11 42 42 H 1.09002 * 109.47589 * 180.02562 * 14 12 11 43 43 H 1.09007 * 109.47019 * 300.00127 * 14 12 11 44 44 H 0.97004 * 119.99596 * 359.97438 * 15 14 12 45 45 H 0.97004 * 119.99723 * 179.97438 * 19 18 16 46 46 H 1.09002 * 115.55306 * 147.82794 * 24 12 11 47 47 H 1.08997 * 117.49573 * 0.02562 * 25 24 12 48 48 H 1.08998 * 117.50269 * 145.01829 * 25 24 12 49 49 H 1.09000 * 117.49728 * 214.98456 * 26 24 12 50 50 H 1.08998 * 117.49822 * 359.97438 * 26 24 12 51 51 H 1.07998 * 119.58468 * 179.72700 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2739 0.0005 5 6 4.0485 2.5131 0.0000 6 6 3.2504 3.6491 -0.0016 7 6 3.8768 5.0197 -0.0017 8 6 4.0904 5.4828 -1.4442 9 6 4.7162 6.8537 -1.4443 10 8 4.9671 7.4058 -0.3941 11 7 4.9980 7.4657 -2.6116 12 6 5.5159 8.8361 -2.6138 13 6 5.8893 9.2380 -4.0421 14 6 6.7563 8.9140 -1.7214 15 7 7.7835 8.0029 -2.2322 16 6 8.9891 7.9015 -1.5908 17 1 9.1825 8.4929 -0.7081 18 6 9.9625 7.0387 -2.0752 19 7 11.1215 6.9416 -1.4589 20 14 9.6282 6.0163 -3.6024 21 1 10.0525 6.7733 -4.8075 22 1 10.3903 4.7442 -3.5232 23 1 8.1760 5.7186 -3.6908 24 6 4.4432 9.7876 -2.0802 25 6 3.1208 9.1730 -1.6169 26 6 3.1789 9.9704 -2.9223 27 6 1.8771 3.5097 0.0028 28 7 1.3186 2.3140 -0.0024 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0228 0.3694 0.0005 33 1 5.1254 2.5946 0.0000 34 1 3.2177 5.7204 0.5110 35 1 4.8367 4.9807 0.5132 36 1 4.7494 4.7821 -1.9569 37 1 3.1305 5.5219 -1.9592 38 1 4.8578 6.9990 -3.4502 39 1 5.0057 9.1825 -4.6778 40 1 6.2750 10.2575 -4.0436 41 1 6.6536 8.5601 -4.4221 42 1 7.1414 9.9337 -1.7226 43 1 6.4903 8.6277 -0.7037 44 1 7.6093 7.4710 -3.0244 45 1 11.8016 6.3383 -1.7973 46 1 4.8137 10.6550 -1.5338 47 1 3.0153 8.0908 -1.6920 48 1 2.6212 9.6362 -0.7661 49 1 2.7176 10.9580 -2.9296 50 1 3.1116 9.4132 -3.8566 51 1 1.2517 4.3902 0.0060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666012206.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:54 Heat of formation + Delta-G solvation = -15.925863 kcal Electronic energy + Delta-G solvation = -31022.305843 eV Core-core repulsion = 26922.768465 eV Total energy + Delta-G solvation = -4099.537377 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.74928 -41.46094 -39.15853 -38.46810 -36.69786 -35.09854 -34.87218 -33.44768 -33.13328 -31.68492 -30.36031 -28.20722 -27.86064 -25.85489 -25.15651 -24.39994 -23.09110 -22.94781 -22.60749 -21.33325 -20.45857 -19.67656 -19.38333 -18.13893 -18.11699 -17.30270 -16.97739 -16.77756 -16.44650 -16.07105 -15.94415 -15.46414 -15.31528 -15.27172 -15.07221 -14.87122 -14.69514 -14.35266 -14.20505 -13.98239 -13.63571 -13.44603 -13.44127 -13.26966 -13.03702 -12.89573 -12.83435 -12.53530 -12.36730 -12.27670 -12.07260 -12.04549 -11.99318 -11.90492 -11.79599 -11.18807 -11.08346 -10.91576 -10.86053 -10.62951 -10.34430 -9.87499 -9.36914 -9.18013 -8.00798 -5.32675 0.13810 0.25139 1.32421 1.40038 1.47189 1.88616 2.14680 2.31754 2.48639 2.75449 2.98611 3.30015 3.35115 3.56500 3.70197 3.92654 3.97179 3.98682 4.00792 4.02544 4.08401 4.20824 4.27583 4.35113 4.38269 4.41989 4.43426 4.47045 4.57828 4.68784 4.70900 4.76205 4.84126 4.91885 4.94596 4.94997 4.97518 5.01061 5.12563 5.20811 5.25331 5.31466 5.34785 5.37064 5.40894 5.48561 5.74684 5.81628 6.22275 6.23174 6.77376 6.81954 7.10129 7.52866 7.85239 8.09414 9.21779 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009490 B = 0.003018 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.673038 B = 9275.701643 C =11402.662680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.295 3.705 4 C -0.192 4.192 5 C -0.042 4.042 6 C -0.164 4.164 7 C -0.047 4.047 8 C -0.129 4.129 9 C 0.512 3.488 10 O -0.559 6.559 11 N -0.717 5.717 12 C 0.206 3.794 13 C -0.145 4.145 14 C 0.141 3.859 15 N -0.742 5.742 16 C -0.227 4.227 17 H 0.042 0.958 18 C -0.070 4.070 19 N -0.989 5.989 20 Si 0.960 3.040 21 H -0.275 1.275 22 H -0.297 1.297 23 H -0.246 1.246 24 C -0.166 4.166 25 C -0.168 4.168 26 C -0.150 4.150 27 C 0.140 3.860 28 N -0.551 5.551 29 H 0.120 0.880 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.122 0.878 38 H 0.409 0.591 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.015 0.985 43 H 0.039 0.961 44 H 0.366 0.634 45 H 0.257 0.743 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.085 0.915 49 H 0.104 0.896 50 H 0.108 0.892 51 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.835 -7.302 -5.178 28.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C 0.117 3.883 4 C -0.213 4.213 5 C -0.067 4.067 6 C -0.166 4.166 7 C -0.085 4.085 8 C -0.169 4.169 9 C 0.301 3.699 10 O -0.437 6.437 11 N -0.370 5.370 12 C 0.120 3.880 13 C -0.203 4.203 14 C 0.014 3.986 15 N -0.388 5.388 16 C -0.359 4.359 17 H 0.060 0.940 18 C -0.260 4.260 19 N -0.640 5.640 20 Si 0.786 3.214 21 H -0.201 1.201 22 H -0.224 1.224 23 H -0.170 1.170 24 C -0.186 4.186 25 C -0.205 4.205 26 C -0.187 4.187 27 C -0.015 4.015 28 N -0.274 5.274 29 H 0.138 0.862 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.171 0.829 33 H 0.168 0.832 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.140 0.860 38 H 0.246 0.754 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.033 0.967 43 H 0.056 0.944 44 H 0.201 0.799 45 H 0.066 0.934 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.103 0.897 49 H 0.122 0.878 50 H 0.126 0.874 51 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -27.354 -7.205 -4.274 28.608 hybrid contribution 1.503 -0.537 -0.519 1.679 sum -25.851 -7.742 -4.792 27.408 Atomic orbital electron populations 1.23031 0.75946 1.04520 1.02208 1.86217 1.24317 1.24562 1.87950 1.20098 0.89974 0.84999 0.93242 1.21266 0.91930 1.00213 1.07850 1.21622 1.01455 0.90803 0.92824 1.20721 0.94822 0.96075 1.04993 1.20038 1.01086 0.91688 0.95721 1.21704 1.03426 0.92642 0.99130 1.20940 0.77485 0.88012 0.83500 1.90681 1.52936 1.67430 1.32690 1.46027 1.66712 1.15156 1.09114 1.19844 0.90723 0.81350 0.96113 1.21992 1.02380 1.02508 0.93389 1.21235 0.87498 0.92057 0.97810 1.42440 1.13240 1.50468 1.32693 1.18974 0.90993 1.18811 1.07092 0.93966 1.25559 0.95702 1.01745 1.03022 1.69919 1.07127 1.42862 1.44100 0.85342 0.78720 0.77902 0.79416 1.20139 1.22382 1.17019 1.22398 0.89594 1.00946 1.05612 1.22946 0.99279 0.99850 0.98399 1.23051 0.98532 1.01993 0.95108 1.22660 0.92438 0.93855 0.92578 1.67350 1.41211 0.99141 1.19746 0.86155 0.92632 0.92446 0.82948 0.83155 0.89751 0.92064 0.88447 0.85999 0.75447 0.88938 0.90893 0.93057 0.96739 0.94354 0.79948 0.93448 0.88669 0.88868 0.89691 0.87797 0.87385 0.80199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.38 113.37 1.18 1.70 16 2 O -0.32 -6.61 10.48 -89.89 -0.94 -7.55 16 3 C 0.30 6.46 7.49 84.79 0.63 7.10 16 4 C -0.19 -3.82 10.04 22.47 0.23 -3.60 16 5 C -0.04 -0.81 9.85 22.45 0.22 -0.59 16 6 C -0.16 -3.11 5.15 -19.77 -0.10 -3.22 16 7 C -0.05 -0.97 4.66 29.85 0.14 -0.83 16 8 C -0.13 -2.48 5.68 29.85 0.17 -2.31 16 9 C 0.51 14.03 4.86 87.66 0.43 14.45 16 10 O -0.56 -20.39 12.32 -3.02 -0.04 -20.43 16 11 N -0.72 -17.54 4.17 -422.93 -1.76 -19.30 16 12 C 0.21 5.81 0.55 3.60 0.00 5.81 16 13 C -0.15 -3.41 8.18 71.98 0.59 -2.82 16 14 C 0.14 5.80 4.81 86.38 0.42 6.22 16 15 N -0.74 -35.28 4.98 -343.45 -1.71 -36.99 16 16 C -0.23 -13.56 10.47 84.03 0.88 -12.68 16 17 H 0.04 2.84 8.06 -2.91 -0.02 2.82 16 18 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 19 N -0.99 -65.09 13.97 21.65 0.30 -64.79 16 20 Si 0.96 45.11 27.74 68.60 1.90 47.02 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 23 H -0.25 -10.01 6.52 99.48 0.65 -9.36 16 24 C -0.17 -4.10 4.89 -10.79 -0.05 -4.15 16 25 C -0.17 -3.65 8.62 30.62 0.26 -3.38 16 26 C -0.15 -2.57 9.68 30.62 0.30 -2.27 16 27 C 0.14 2.55 10.85 84.63 0.92 3.47 16 28 N -0.55 -11.75 9.22 -308.96 -2.85 -14.59 16 29 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 0.79 8.11 -2.38 -0.02 0.78 16 31 H 0.06 0.80 8.10 -2.39 -0.02 0.78 16 32 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.08 1.72 8.05 -2.38 -0.02 1.70 16 35 H 0.06 1.60 8.05 -2.39 -0.02 1.58 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.41 7.37 8.48 -92.71 -0.79 6.59 16 39 H 0.09 1.49 6.91 -2.39 -0.02 1.47 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.05 1.36 6.86 -2.39 -0.02 1.34 16 42 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.04 1.83 5.63 -2.38 -0.01 1.82 16 44 H 0.37 15.94 4.21 -92.71 -0.39 15.55 16 45 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 46 H 0.10 2.59 8.06 -2.39 -0.02 2.57 16 47 H 0.09 2.00 5.21 -2.39 -0.01 1.98 16 48 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.11 1.50 7.20 -2.39 -0.02 1.48 16 51 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -80.24 407.69 1.29 -78.95 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: -0.29 Total: 38.54 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 6.67 Total: -0.85 kcal Atomic # 7 Polarization: -129.66 SS G_CDS: -6.02 Total: -135.68 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.98 Total: -27.97 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.90 Total: 47.02 kcal Total: -80.24 1.29 -78.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666012206.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.026 kcal (2) G-P(sol) polarization free energy of solvation -80.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds