Wall clock time and date at job start Wed Apr 1 2020 04:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47077 * 2 1 4 4 N 1.46508 * 109.47426 * 180.02562 * 3 2 1 5 5 C 1.34768 * 119.99927 * 275.45465 * 4 3 2 6 6 O 1.21498 * 119.99765 * 184.72790 * 5 4 3 7 7 C 1.48334 * 120.00327 * 4.72817 * 5 4 3 8 8 C 1.42265 * 126.94152 * 174.95811 * 7 5 4 9 9 C 1.35310 * 103.92329 * 179.88817 * 8 7 5 10 10 C 1.50701 * 126.67012 * 180.08141 * 9 8 7 11 11 C 1.52993 * 117.50362 * 189.06906 * 10 9 8 12 12 C 1.52999 * 117.50323 * 120.40235 * 10 9 8 13 13 O 1.34014 * 106.66780 * 0.37067 * 9 8 7 14 14 N 1.20898 * 111.84798 * 359.74486 * 13 9 8 15 15 C 1.46500 * 119.99841 * 95.45292 * 4 3 2 16 16 C 1.53067 * 109.45449 * 119.78909 * 15 4 3 17 17 C 1.53195 * 109.29819 * 181.24053 * 16 15 4 18 18 N 1.46930 * 108.89113 * 305.58082 * 17 16 15 19 19 C 1.36932 * 120.62814 * 233.51377 * 18 17 16 20 20 H 1.08005 * 120.00103 * 139.06473 * 19 18 17 21 21 C 1.38814 * 120.00186 * 319.05823 * 19 18 17 22 22 N 1.31618 * 120.00180 * 174.80923 * 21 19 18 23 23 Si 1.86799 * 119.99972 * 354.81499 * 21 19 18 24 24 H 1.48496 * 109.47447 * 87.21432 * 23 21 19 25 25 H 1.48497 * 109.47221 * 207.22004 * 23 21 19 26 26 H 1.48499 * 109.46886 * 327.21492 * 23 21 19 27 27 C 1.46928 * 118.73736 * 53.53615 * 18 17 16 28 28 C 1.53038 * 109.45723 * 240.00374 * 15 4 3 29 29 H 1.09007 * 109.47061 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47212 * 299.99587 * 1 2 3 31 31 H 1.08996 * 109.47430 * 60.00152 * 1 2 3 32 32 H 1.09012 * 109.46987 * 240.00407 * 2 1 3 33 33 H 1.08998 * 109.47570 * 120.00612 * 2 1 3 34 34 H 1.08999 * 109.47213 * 60.00307 * 3 2 1 35 35 H 1.09006 * 109.47376 * 300.00044 * 3 2 1 36 36 H 1.08003 * 128.03884 * 0.02562 * 8 7 5 37 37 H 1.09012 * 115.54664 * 334.73911 * 10 9 8 38 38 H 1.09004 * 117.49967 * 359.97438 * 11 10 9 39 39 H 1.09004 * 117.49989 * 145.02258 * 11 10 9 40 40 H 1.08991 * 117.50648 * 214.98228 * 12 10 9 41 41 H 1.09007 * 117.49628 * 359.97438 * 12 10 9 42 42 H 1.09001 * 109.46209 * 359.97305 * 15 4 3 43 43 H 1.09009 * 109.38936 * 61.36775 * 16 15 4 44 44 H 1.09001 * 109.62637 * 301.26306 * 16 15 4 45 45 H 1.09002 * 109.58666 * 185.72171 * 17 16 15 46 46 H 1.08992 * 109.58354 * 65.43667 * 17 16 15 47 47 H 0.97000 * 120.00017 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.58492 * 66.18136 * 27 18 17 49 49 H 1.09004 * 109.58318 * 186.46016 * 27 18 17 50 50 H 1.08999 * 109.50382 * 58.66647 * 28 15 4 51 51 H 1.09004 * 109.49847 * 298.56344 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1794 1.3314 1.1609 6 8 5.3912 1.4177 1.1704 7 6 3.4421 1.1039 2.4278 8 6 4.0037 0.8665 3.7131 9 6 2.9257 0.7274 4.5189 10 6 2.9390 0.4596 6.0019 11 6 1.6040 0.1291 6.6722 12 6 2.2654 1.4887 6.9118 13 8 1.8436 0.8677 3.7408 14 7 2.1423 1.0753 2.5879 15 6 4.2370 1.5633 -1.2639 16 6 5.1128 2.8181 -1.2277 17 6 5.8527 2.9578 -2.5618 18 7 6.5867 1.7138 -2.8312 19 6 7.9281 1.7406 -3.1050 20 1 8.5807 0.9910 -2.6822 21 6 8.4493 2.7312 -3.9260 22 7 9.7500 2.8188 -4.1074 23 14 7.3046 3.9399 -4.7735 24 1 7.0430 5.0898 -3.8711 25 1 7.9379 4.4270 -6.0252 26 1 6.0230 3.2636 -5.0979 27 6 5.8539 0.4407 -2.8017 28 6 5.1166 0.3270 -1.4637 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 5.0480 0.8124 3.9834 37 1 3.8302 -0.0407 6.3812 38 1 0.7159 0.1058 6.0407 39 1 1.6169 -0.5882 7.4928 40 1 2.7128 1.6653 7.8898 41 1 1.8128 2.3598 6.4378 42 1 3.5281 1.6416 -2.0883 43 1 5.8369 2.7308 -0.4175 44 1 4.4878 3.6962 -1.0646 45 1 6.5535 3.7908 -2.5055 46 1 5.1340 3.1383 -3.3610 47 1 10.1142 3.5112 -4.6808 48 1 5.1336 0.4147 -3.6193 49 1 6.5554 -0.3871 -2.9063 50 1 4.4928 -0.5668 -1.4669 51 1 5.8422 0.2619 -0.6528 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690135110.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:45 Heat of formation + Delta-G solvation = 87.737728 kcal Electronic energy + Delta-G solvation = -31846.802838 eV Core-core repulsion = 27751.760652 eV Total energy + Delta-G solvation = -4095.042187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.28784 -40.23800 -37.84873 -37.33305 -36.20247 -34.21235 -33.33977 -32.09948 -31.67947 -30.30841 -30.14328 -26.38699 -25.84890 -24.44985 -23.83687 -22.94684 -22.80413 -22.46043 -21.79211 -21.54622 -19.82073 -18.61130 -17.95481 -17.71505 -17.10205 -16.55379 -16.35891 -15.70561 -15.12338 -14.89746 -14.84421 -14.64720 -14.07083 -14.01634 -13.76336 -13.64530 -13.40755 -13.04387 -13.00560 -12.79436 -12.52362 -12.45855 -12.12944 -12.09493 -11.82673 -11.73418 -11.63770 -11.54125 -11.38186 -11.15610 -10.98258 -10.90025 -10.76177 -10.57373 -10.32487 -10.23696 -10.05569 -9.72283 -9.52909 -9.48118 -9.45057 -8.57062 -8.47526 -6.69358 -5.87790 -3.40586 0.91700 1.45187 2.57435 2.84656 3.15742 3.32467 3.36090 3.48577 3.52161 3.76349 3.90994 4.24950 4.39268 4.53536 4.57112 4.74925 4.87791 4.89975 4.97547 5.06660 5.10060 5.13008 5.19643 5.26427 5.32335 5.35146 5.36764 5.48820 5.50097 5.57549 5.58934 5.64439 5.67114 5.70138 5.86965 5.93810 5.97386 6.13747 6.15665 6.19479 6.25692 6.34836 6.47577 6.68778 6.72657 6.79776 6.91840 7.06578 7.43942 7.79029 8.16293 8.18182 8.46991 9.02687 9.77100 10.21271 11.27660 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017221 B = 0.002735 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.488512 B =10234.311651 C =11142.591658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.103 3.897 4 N -0.595 5.595 5 C 0.591 3.409 6 O -0.501 6.501 7 C -0.015 4.015 8 C -0.175 4.175 9 C -0.005 4.005 10 C -0.086 4.086 11 C -0.166 4.166 12 C -0.162 4.162 13 O 0.111 5.889 14 N -0.325 5.325 15 C 0.160 3.840 16 C -0.150 4.150 17 C 0.128 3.872 18 N -0.605 5.605 19 C -0.260 4.260 20 H 0.080 0.920 21 C 0.029 3.971 22 N -0.915 5.915 23 Si 0.896 3.104 24 H -0.287 1.287 25 H -0.304 1.304 26 H -0.268 1.268 27 C 0.155 3.845 28 C -0.148 4.148 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.180 0.820 37 H 0.140 0.860 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.071 0.929 46 H 0.024 0.976 47 H 0.262 0.738 48 H 0.021 0.979 49 H 0.066 0.934 50 H 0.051 0.949 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.036 -5.298 20.296 30.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C -0.021 4.021 4 N -0.328 5.328 5 C 0.375 3.625 6 O -0.374 6.374 7 C -0.174 4.174 8 C -0.197 4.197 9 C -0.068 4.068 10 C -0.105 4.105 11 C -0.203 4.203 12 C -0.199 4.199 13 O 0.039 5.961 14 N -0.028 5.028 15 C 0.059 3.941 16 C -0.190 4.190 17 C 0.002 3.998 18 N -0.329 5.329 19 C -0.389 4.389 20 H 0.097 0.903 21 C -0.171 4.171 22 N -0.557 5.557 23 Si 0.727 3.273 24 H -0.214 1.214 25 H -0.232 1.232 26 H -0.193 1.193 27 C 0.028 3.972 28 C -0.188 4.188 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.198 0.802 37 H 0.158 0.842 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.042 0.958 47 H 0.072 0.928 48 H 0.039 0.961 49 H 0.085 0.915 50 H 0.070 0.930 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.208 -5.000 19.287 29.836 hybrid contribution 0.150 0.699 -0.158 0.732 sum -22.058 -4.301 19.129 29.512 Atomic orbital electron populations 1.21641 0.95084 1.01650 1.01853 1.21854 0.96224 0.96962 1.02167 1.21939 0.78948 0.97563 1.03601 1.48159 1.06841 1.71310 1.06451 1.16961 0.86324 0.77883 0.81314 1.90840 1.12415 1.48813 1.85357 1.23663 0.89972 1.06406 0.97349 1.22357 1.01509 1.05778 0.90092 1.23363 0.85549 1.03429 0.94489 1.20449 0.99766 1.06543 0.83748 1.23098 0.95188 0.99102 1.02913 1.23137 1.02783 0.93639 1.00348 1.84752 1.33413 1.64671 1.13297 1.74371 1.15798 1.16108 0.96567 1.21170 0.93265 0.97027 0.82665 1.22514 0.99392 0.95047 1.02079 1.21390 0.94774 0.90999 0.92652 1.44252 1.06431 1.00267 1.81963 1.18851 0.81545 1.14801 1.23706 0.90256 1.25584 0.95616 0.99235 0.96621 1.69753 1.10748 1.34791 1.40453 0.86753 0.81047 0.81020 0.78505 1.21428 1.23245 1.19276 1.20888 0.94220 0.89722 0.92335 1.22446 0.99214 0.95213 1.01919 0.92769 0.92354 0.92772 0.91868 0.92090 0.89059 0.90294 0.80219 0.84201 0.87748 0.87524 0.87405 0.88110 0.90021 0.89193 0.93219 0.91082 0.95785 0.92771 0.96138 0.91525 0.93024 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.13 -1.45 5.71 -26.73 -0.15 -1.60 16 3 C 0.10 1.22 4.97 -4.04 -0.02 1.20 16 4 N -0.60 -8.96 2.43 -166.97 -0.41 -9.37 16 5 C 0.59 9.70 7.07 -12.11 -0.09 9.62 16 6 O -0.50 -9.97 13.23 5.37 0.07 -9.90 16 7 C -0.01 -0.20 6.53 -82.53 -0.54 -0.74 16 8 C -0.18 -1.98 10.93 -39.08 -0.43 -2.41 16 9 C -0.01 -0.05 6.93 -35.35 -0.24 -0.29 16 10 C -0.09 -0.50 6.26 -91.78 -0.57 -1.07 16 11 C -0.17 -0.74 10.18 -26.70 -0.27 -1.01 16 12 C -0.16 -0.75 10.24 -26.69 -0.27 -1.02 16 13 O 0.11 1.14 10.96 17.25 0.19 1.33 16 14 N -0.32 -3.87 7.32 33.29 0.24 -3.62 16 15 C 0.16 2.72 2.50 -67.88 -0.17 2.55 16 16 C -0.15 -2.95 5.28 -26.60 -0.14 -3.10 16 17 C 0.13 2.92 4.16 -3.71 -0.02 2.90 16 18 N -0.61 -15.10 2.64 -172.31 -0.46 -15.56 16 19 C -0.26 -7.61 9.99 -15.06 -0.15 -7.76 16 20 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 21 C 0.03 0.86 5.41 -17.43 -0.09 0.77 16 22 N -0.91 -28.93 13.97 55.49 0.78 -28.16 16 23 Si 0.90 23.18 24.36 -169.99 -4.14 19.04 16 24 H -0.29 -7.20 6.70 56.52 0.38 -6.82 16 25 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 26 H -0.27 -6.69 6.26 56.52 0.35 -6.34 16 27 C 0.15 3.24 6.52 -3.71 -0.02 3.21 16 28 C -0.15 -2.71 5.27 -26.61 -0.14 -2.85 16 29 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 33 H 0.06 0.74 6.64 -51.93 -0.34 0.39 16 34 H 0.09 1.09 5.63 -51.93 -0.29 0.79 16 35 H 0.08 0.85 7.81 -51.93 -0.41 0.44 16 36 H 0.18 1.86 8.06 -52.48 -0.42 1.44 16 37 H 0.14 0.60 8.14 -51.92 -0.42 0.17 16 38 H 0.10 0.50 8.01 -51.93 -0.42 0.09 16 39 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 1.27 7.72 -51.93 -0.40 0.87 16 43 H 0.09 2.01 6.06 -51.92 -0.31 1.70 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 1.76 5.17 -51.93 -0.27 1.49 16 46 H 0.02 0.53 6.62 -51.93 -0.34 0.19 16 47 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 1.41 7.93 -51.93 -0.41 0.99 16 50 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.08 1.73 6.37 -51.93 -0.33 1.40 16 LS Contribution 394.80 15.07 5.95 5.95 Total: -1.00 -33.80 394.80 -8.96 -42.76 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -8.23 Total: 0.03 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -2.95 Total: -2.50 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.16 Total: -56.71 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.26 Total: -8.57 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.14 Total: 19.04 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.80 -8.96 -42.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690135110.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.500 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds