Wall clock time and date at job start Wed Apr 1 2020 04:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47077 * 2 1 4 4 N 1.46508 * 109.47426 * 180.02562 * 3 2 1 5 5 C 1.34768 * 119.99927 * 275.45465 * 4 3 2 6 6 O 1.21498 * 119.99765 * 184.72790 * 5 4 3 7 7 C 1.48334 * 120.00327 * 4.72817 * 5 4 3 8 8 C 1.42265 * 126.94152 * 174.95811 * 7 5 4 9 9 C 1.35310 * 103.92329 * 179.88817 * 8 7 5 10 10 C 1.50701 * 126.67012 * 180.08141 * 9 8 7 11 11 C 1.52993 * 117.50362 * 189.06906 * 10 9 8 12 12 C 1.52999 * 117.50323 * 120.40235 * 10 9 8 13 13 O 1.34014 * 106.66780 * 0.37067 * 9 8 7 14 14 N 1.20898 * 111.84798 * 359.74486 * 13 9 8 15 15 C 1.46500 * 119.99841 * 95.45292 * 4 3 2 16 16 C 1.53067 * 109.45449 * 119.78909 * 15 4 3 17 17 C 1.53195 * 109.29819 * 181.24053 * 16 15 4 18 18 N 1.46930 * 108.89113 * 305.58082 * 17 16 15 19 19 C 1.36932 * 120.62814 * 233.51377 * 18 17 16 20 20 H 1.08005 * 120.00103 * 139.06473 * 19 18 17 21 21 C 1.38814 * 120.00186 * 319.05823 * 19 18 17 22 22 N 1.31618 * 120.00180 * 174.80923 * 21 19 18 23 23 Si 1.86799 * 119.99972 * 354.81499 * 21 19 18 24 24 H 1.48496 * 109.47447 * 87.21432 * 23 21 19 25 25 H 1.48497 * 109.47221 * 207.22004 * 23 21 19 26 26 H 1.48499 * 109.46886 * 327.21492 * 23 21 19 27 27 C 1.46928 * 118.73736 * 53.53615 * 18 17 16 28 28 C 1.53038 * 109.45723 * 240.00374 * 15 4 3 29 29 H 1.09007 * 109.47061 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47212 * 299.99587 * 1 2 3 31 31 H 1.08996 * 109.47430 * 60.00152 * 1 2 3 32 32 H 1.09012 * 109.46987 * 240.00407 * 2 1 3 33 33 H 1.08998 * 109.47570 * 120.00612 * 2 1 3 34 34 H 1.08999 * 109.47213 * 60.00307 * 3 2 1 35 35 H 1.09006 * 109.47376 * 300.00044 * 3 2 1 36 36 H 1.08003 * 128.03884 * 0.02562 * 8 7 5 37 37 H 1.09012 * 115.54664 * 334.73911 * 10 9 8 38 38 H 1.09004 * 117.49967 * 359.97438 * 11 10 9 39 39 H 1.09004 * 117.49989 * 145.02258 * 11 10 9 40 40 H 1.08991 * 117.50648 * 214.98228 * 12 10 9 41 41 H 1.09007 * 117.49628 * 359.97438 * 12 10 9 42 42 H 1.09001 * 109.46209 * 359.97305 * 15 4 3 43 43 H 1.09009 * 109.38936 * 61.36775 * 16 15 4 44 44 H 1.09001 * 109.62637 * 301.26306 * 16 15 4 45 45 H 1.09002 * 109.58666 * 185.72171 * 17 16 15 46 46 H 1.08992 * 109.58354 * 65.43667 * 17 16 15 47 47 H 0.97000 * 120.00017 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.58492 * 66.18136 * 27 18 17 49 49 H 1.09004 * 109.58318 * 186.46016 * 27 18 17 50 50 H 1.08999 * 109.50382 * 58.66647 * 28 15 4 51 51 H 1.09004 * 109.49847 * 298.56344 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1794 1.3314 1.1609 6 8 5.3912 1.4177 1.1704 7 6 3.4421 1.1039 2.4278 8 6 4.0037 0.8665 3.7131 9 6 2.9257 0.7274 4.5189 10 6 2.9390 0.4596 6.0019 11 6 1.6040 0.1291 6.6722 12 6 2.2654 1.4887 6.9118 13 8 1.8436 0.8677 3.7408 14 7 2.1423 1.0753 2.5879 15 6 4.2370 1.5633 -1.2639 16 6 5.1128 2.8181 -1.2277 17 6 5.8527 2.9578 -2.5618 18 7 6.5867 1.7138 -2.8312 19 6 7.9281 1.7406 -3.1050 20 1 8.5807 0.9910 -2.6822 21 6 8.4493 2.7312 -3.9260 22 7 9.7500 2.8188 -4.1074 23 14 7.3046 3.9399 -4.7735 24 1 7.0430 5.0898 -3.8711 25 1 7.9379 4.4270 -6.0252 26 1 6.0230 3.2636 -5.0979 27 6 5.8539 0.4407 -2.8017 28 6 5.1166 0.3270 -1.4637 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 5.0480 0.8124 3.9834 37 1 3.8302 -0.0407 6.3812 38 1 0.7159 0.1058 6.0407 39 1 1.6169 -0.5882 7.4928 40 1 2.7128 1.6653 7.8898 41 1 1.8128 2.3598 6.4378 42 1 3.5281 1.6416 -2.0883 43 1 5.8369 2.7308 -0.4175 44 1 4.4878 3.6962 -1.0646 45 1 6.5535 3.7908 -2.5055 46 1 5.1340 3.1383 -3.3610 47 1 10.1142 3.5112 -4.6808 48 1 5.1336 0.4147 -3.6193 49 1 6.5554 -0.3871 -2.9063 50 1 4.4928 -0.5668 -1.4669 51 1 5.8422 0.2619 -0.6528 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690135110.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:43 Heat of formation + Delta-G solvation = 68.126409 kcal Electronic energy + Delta-G solvation = -31847.653249 eV Core-core repulsion = 27751.760652 eV Total energy + Delta-G solvation = -4095.892597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -46.18811 -41.53479 -38.97578 -38.28555 -37.41445 -35.40129 -34.66308 -33.69785 -32.63620 -31.99234 -31.77044 -27.46559 -27.32909 -25.59846 -24.81496 -24.38274 -23.83982 -23.20834 -23.00488 -22.51241 -21.38568 -19.76313 -18.88947 -18.82598 -18.56752 -17.79067 -17.55535 -16.95495 -16.43383 -16.25055 -15.83451 -15.77394 -15.56190 -15.35794 -15.06977 -14.82188 -14.75390 -14.50381 -14.26213 -14.23276 -13.82235 -13.49837 -13.43814 -13.25596 -12.85671 -12.73277 -12.64970 -12.46247 -12.40723 -12.33140 -12.20672 -12.14640 -12.11018 -11.80933 -11.69981 -11.54704 -11.47440 -11.37559 -11.28851 -10.95549 -10.76024 -10.16528 -9.77216 -8.74690 -8.18201 -5.70093 -0.01208 0.56152 1.30620 1.38294 1.49703 1.61331 1.89591 1.99367 2.40394 2.73016 2.90901 3.09974 3.24173 3.29431 3.63657 3.77363 3.88469 3.90614 3.93405 3.99617 4.03486 4.12262 4.18120 4.30004 4.31912 4.35010 4.44874 4.46661 4.48104 4.60324 4.71143 4.72219 4.74426 4.81037 4.83111 4.90011 4.92597 4.97534 5.01851 5.05282 5.14061 5.17600 5.19698 5.26997 5.27457 5.36383 5.43023 5.60348 5.93676 6.13694 6.21488 6.82781 6.93254 7.02000 7.56418 8.02965 9.00741 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017221 B = 0.002735 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.488512 B =10234.311651 C =11142.591658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.101 3.899 4 N -0.591 5.591 5 C 0.586 3.414 6 O -0.548 6.548 7 C -0.039 4.039 8 C -0.197 4.197 9 C 0.018 3.982 10 C -0.103 4.103 11 C -0.156 4.156 12 C -0.156 4.156 13 O 0.122 5.878 14 N -0.322 5.322 15 C 0.166 3.834 16 C -0.141 4.141 17 C 0.125 3.875 18 N -0.620 5.620 19 C -0.256 4.256 20 H 0.033 0.967 21 C -0.032 4.032 22 N -0.964 5.964 23 Si 0.964 3.036 24 H -0.275 1.275 25 H -0.308 1.308 26 H -0.245 1.245 27 C 0.152 3.848 28 C -0.135 4.135 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.181 0.819 37 H 0.157 0.843 38 H 0.101 0.899 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.046 0.954 46 H 0.048 0.952 47 H 0.263 0.737 48 H 0.049 0.951 49 H 0.051 0.949 50 H 0.079 0.921 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.555 -5.102 21.215 34.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C -0.021 4.021 4 N -0.322 5.322 5 C 0.372 3.628 6 O -0.425 6.425 7 C -0.196 4.196 8 C -0.220 4.220 9 C -0.045 4.045 10 C -0.122 4.122 11 C -0.193 4.193 12 C -0.194 4.194 13 O 0.047 5.953 14 N -0.023 5.023 15 C 0.064 3.936 16 C -0.181 4.181 17 C 0.000 4.000 18 N -0.345 5.345 19 C -0.386 4.386 20 H 0.051 0.949 21 C -0.227 4.227 22 N -0.609 5.609 23 Si 0.792 3.208 24 H -0.201 1.201 25 H -0.236 1.236 26 H -0.169 1.169 27 C 0.026 3.974 28 C -0.175 4.175 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.199 0.801 37 H 0.174 0.826 38 H 0.119 0.881 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.112 0.888 42 H 0.130 0.870 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.070 0.930 50 H 0.097 0.903 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -26.805 -4.824 20.213 33.916 hybrid contribution 1.542 0.544 -0.261 1.656 sum -25.262 -4.280 19.952 32.474 Atomic orbital electron populations 1.21598 0.93189 1.02326 1.02510 1.21790 0.97740 0.95854 1.01256 1.22172 0.76638 0.98617 1.04683 1.48143 1.08120 1.70556 1.05352 1.17346 0.85978 0.76985 0.82475 1.90824 1.14493 1.50938 1.86219 1.23391 0.90761 1.08588 0.96889 1.22475 1.02349 1.07309 0.89876 1.23831 0.84200 1.00900 0.95587 1.20717 1.01557 1.08309 0.81587 1.23217 0.93889 0.99330 1.02854 1.23238 1.02170 0.93400 1.00545 1.84728 1.33693 1.63899 1.12976 1.74343 1.14791 1.15872 0.97315 1.21021 0.93415 0.94677 0.84535 1.22331 0.99194 0.97637 0.98939 1.21430 0.94571 0.89091 0.94934 1.44364 1.05223 1.02500 1.82455 1.18682 0.83439 1.13558 1.22957 0.94940 1.26359 0.97126 1.01603 0.97563 1.69918 1.12946 1.36200 1.41808 0.85649 0.79499 0.78784 0.76901 1.20118 1.23631 1.16882 1.21028 0.94280 0.87461 0.94592 1.22243 0.98837 0.97398 0.98994 0.92131 0.92227 0.91568 0.92092 0.93709 0.88969 0.88181 0.80126 0.82554 0.88075 0.85540 0.85581 0.88807 0.86959 0.92647 0.90827 0.93576 0.93458 0.92783 0.93319 0.93006 0.90291 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.91 71.98 0.71 -1.25 16 2 C -0.13 -2.44 5.71 30.59 0.17 -2.26 16 3 C 0.10 2.11 4.97 86.38 0.43 2.54 16 4 N -0.59 -16.92 2.43 -800.47 -1.95 -18.87 16 5 C 0.59 19.45 7.07 86.93 0.61 20.06 16 6 O -0.55 -22.92 13.23 -3.71 -0.05 -22.97 16 7 C -0.04 -1.05 6.53 42.96 0.28 -0.77 16 8 C -0.20 -4.48 10.93 22.60 0.25 -4.23 16 9 C 0.02 0.30 6.93 25.01 0.17 0.47 16 10 C -0.10 -0.96 6.26 -11.54 -0.07 -1.03 16 11 C -0.16 -0.93 10.18 30.62 0.31 -0.61 16 12 C -0.16 -1.04 10.24 30.62 0.31 -0.72 16 13 O 0.12 2.30 10.96 71.91 0.79 3.09 16 14 N -0.32 -7.26 7.32 -49.52 -0.36 -7.62 16 15 C 0.17 5.30 2.50 45.03 0.11 5.42 16 16 C -0.14 -5.41 5.28 30.68 0.16 -5.25 16 17 C 0.12 5.54 4.16 86.36 0.36 5.90 16 18 N -0.62 -31.16 2.64 -699.07 -1.85 -33.01 16 19 C -0.26 -15.63 9.99 84.03 0.84 -14.79 16 20 H 0.03 2.24 8.06 -2.91 -0.02 2.21 16 21 C -0.03 -1.94 5.41 84.86 0.46 -1.48 16 22 N -0.96 -63.41 13.97 21.65 0.30 -63.11 16 23 Si 0.96 48.02 24.36 68.60 1.67 49.69 16 24 H -0.27 -13.05 6.70 99.48 0.67 -12.38 16 25 H -0.31 -15.40 7.11 99.48 0.71 -14.69 16 26 H -0.25 -11.20 6.26 99.48 0.62 -10.58 16 27 C 0.15 6.26 6.52 86.36 0.56 6.82 16 28 C -0.13 -4.86 5.27 30.67 0.16 -4.70 16 29 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.04 1.01 6.64 -2.39 -0.02 0.99 16 34 H 0.09 1.97 5.63 -2.39 -0.01 1.96 16 35 H 0.10 1.72 7.81 -2.38 -0.02 1.70 16 36 H 0.18 3.92 8.06 -2.91 -0.02 3.90 16 37 H 0.16 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.10 0.70 8.01 -2.39 -0.02 0.68 16 39 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.11 2.99 7.72 -2.39 -0.02 2.97 16 43 H 0.05 2.54 6.06 -2.38 -0.01 2.53 16 44 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.05 2.26 5.17 -2.39 -0.01 2.25 16 46 H 0.05 1.91 6.62 -2.39 -0.02 1.89 16 47 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 48 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.05 2.24 7.93 -2.38 -0.02 2.22 16 50 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 51 H 0.05 2.05 6.37 -2.39 -0.02 2.04 16 Total: -1.00 -78.19 394.80 5.20 -72.99 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.80 Total: 15.70 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 5.84 Total: 4.11 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -3.86 Total: -122.61 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.74 Total: -19.88 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 1.67 Total: 49.69 kcal Total: -78.19 5.20 -72.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690135110.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.118 kcal (2) G-P(sol) polarization free energy of solvation -78.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds