Wall clock time and date at job start Wed Apr 1 2020 04:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47193 * 2 1 4 4 N 1.46490 * 109.47029 * 180.02562 * 3 2 1 5 5 C 1.34778 * 119.99987 * 264.38337 * 4 3 2 6 6 O 1.21577 * 119.99725 * 43.07918 * 5 4 3 7 7 C 1.47620 * 120.00198 * 223.07123 * 5 4 3 8 8 C 1.40278 * 120.49675 * 150.95152 * 7 5 4 9 9 C 1.37954 * 118.36154 * 180.02562 * 8 7 5 10 10 C 1.39170 * 119.25655 * 359.97438 * 9 8 7 11 11 O 1.35497 * 119.52203 * 179.97438 * 10 9 8 12 12 C 1.42901 * 116.99838 * 180.02562 * 11 10 9 13 13 N 1.32399 * 120.95408 * 0.02562 * 10 9 8 14 14 C 1.31669 * 121.79539 * 359.70151 * 13 10 9 15 15 C 1.46504 * 120.00445 * 84.38966 * 4 3 2 16 16 C 1.53034 * 109.45077 * 92.01665 * 15 4 3 17 17 C 1.53193 * 109.31179 * 181.38344 * 16 15 4 18 18 N 1.46921 * 108.77596 * 305.36262 * 17 16 15 19 19 C 1.36938 * 120.63375 * 233.63019 * 18 17 16 20 20 H 1.07996 * 120.00068 * 26.65710 * 19 18 17 21 21 C 1.38819 * 119.99968 * 206.65475 * 19 18 17 22 22 N 1.31617 * 119.99772 * 19.81710 * 21 19 18 23 23 Si 1.86798 * 119.99810 * 199.82085 * 21 19 18 24 24 H 1.48496 * 109.47263 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47210 * 120.00026 * 23 21 19 26 26 H 1.48494 * 109.47004 * 240.00038 * 23 21 19 27 27 C 1.46929 * 118.73661 * 53.61170 * 18 17 16 28 28 C 1.53040 * 109.46238 * 212.08381 * 15 4 3 29 29 H 1.09001 * 109.46638 * 299.99923 * 1 2 3 30 30 H 1.09003 * 109.46825 * 59.99884 * 1 2 3 31 31 H 1.08994 * 109.46938 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46638 * 240.00076 * 2 1 3 33 33 H 1.09003 * 109.46825 * 120.00116 * 2 1 3 34 34 H 1.08996 * 109.47195 * 59.99727 * 3 2 1 35 35 H 1.08997 * 109.46995 * 300.00118 * 3 2 1 36 36 H 1.08007 * 120.82163 * 359.97438 * 8 7 5 37 37 H 1.08001 * 120.37185 * 179.97438 * 9 8 7 38 38 H 1.08999 * 109.47231 * 299.99084 * 12 11 10 39 39 H 1.08994 * 109.47345 * 59.99854 * 12 11 10 40 40 H 1.09004 * 109.47068 * 180.02562 * 12 11 10 41 41 H 1.08000 * 119.68729 * 180.28848 * 14 13 10 42 42 H 1.09004 * 109.45051 * 332.05373 * 15 4 3 43 43 H 1.09005 * 109.49914 * 301.33325 * 16 15 4 44 44 H 1.09003 * 109.49684 * 61.43310 * 16 15 4 45 45 H 1.09005 * 109.58787 * 185.57955 * 17 16 15 46 46 H 1.09001 * 109.70552 * 65.22100 * 17 16 15 47 47 H 0.96998 * 119.99522 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.58923 * 186.60578 * 27 18 17 49 49 H 1.09001 * 109.70172 * 66.24700 * 27 18 17 50 50 H 1.08994 * 109.49347 * 298.57689 * 28 15 4 51 51 H 1.08998 * 109.49748 * 58.67140 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1794 1.5565 1.1607 6 8 3.8177 0.9298 2.1377 7 6 5.3573 2.4422 1.2464 8 6 5.7020 3.0527 2.4614 9 6 6.8112 3.8724 2.4914 10 6 7.5463 4.0651 1.3254 11 8 8.6364 4.8695 1.3487 12 6 9.3508 5.0295 0.1214 13 7 7.1953 3.4744 0.1937 14 6 6.1475 2.6803 0.1215 15 6 4.2371 1.3186 -1.2636 16 6 4.5357 2.7132 -1.8184 17 6 5.2707 2.5797 -3.1558 18 7 6.4608 1.7408 -2.9597 19 6 7.6989 2.1865 -3.3388 20 1 7.9036 3.2463 -3.3747 21 6 8.6908 1.2761 -3.6770 22 7 8.3675 0.0455 -4.0137 23 14 10.4843 1.7977 -3.6541 24 1 10.5805 3.2219 -3.2449 25 1 11.2331 0.9532 -2.6890 26 1 11.0651 1.6327 -5.0107 27 6 6.2974 0.4146 -2.3487 28 6 5.5509 0.5723 -1.0203 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 5.1131 2.8859 3.3512 37 1 7.1058 4.3593 3.4093 38 1 9.7107 4.0585 -0.2188 39 1 8.6882 5.4558 -0.6318 40 1 10.1989 5.6960 0.2789 41 1 5.8947 2.2124 -0.8185 42 1 3.6320 0.7642 -1.9810 43 1 3.6006 3.2526 -1.9694 44 1 5.1614 3.2593 -1.1124 45 1 5.5730 3.5664 -3.5068 46 1 4.6137 2.1156 -3.8915 47 1 9.0606 -0.5905 -4.2503 48 1 7.2771 -0.0273 -2.1670 49 1 5.7241 -0.2292 -3.0158 50 1 6.1669 1.1386 -0.3218 51 1 5.3383 -0.4120 -0.6033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690135349.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:15 Heat of formation + Delta-G solvation = 85.888985 kcal Electronic energy + Delta-G solvation = -33404.903322 eV Core-core repulsion = 29309.780968 eV Total energy + Delta-G solvation = -4095.122354 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.71171 -39.69825 -38.17350 -37.41553 -35.65149 -33.90056 -32.41482 -31.94515 -30.98440 -30.21959 -29.58383 -27.36165 -26.25962 -25.20228 -23.92340 -23.35254 -22.52731 -22.18040 -21.46582 -20.14965 -19.12507 -18.07324 -17.35774 -17.09483 -16.31227 -15.95775 -15.78539 -15.49863 -15.06370 -14.80600 -14.59380 -14.31811 -14.06902 -13.91104 -13.56381 -13.33372 -13.22656 -13.02536 -12.96917 -12.73264 -12.57127 -12.19903 -12.01559 -11.95593 -11.68112 -11.63663 -11.40868 -11.23999 -11.08409 -10.79106 -10.76120 -10.67132 -10.44876 -10.13838 -10.07298 -9.95465 -9.78270 -9.64033 -9.50618 -8.91993 -8.47578 -8.36943 -8.09702 -6.80867 -5.85245 -3.25034 0.92855 1.39086 2.71239 3.11994 3.23668 3.35115 3.43553 3.44909 3.94445 4.45051 4.51638 4.67583 4.89846 4.96348 5.01187 5.08584 5.15881 5.19804 5.22233 5.28053 5.31592 5.40062 5.43079 5.49601 5.55673 5.59862 5.60727 5.74311 5.78460 5.80223 5.90427 5.96144 5.97980 6.00919 6.06988 6.16211 6.22066 6.31325 6.33377 6.37604 6.44458 6.57848 6.63380 6.77121 6.92026 7.14155 7.33812 7.48387 7.55635 7.79323 8.06442 8.17166 8.35403 9.12442 9.75917 10.29500 11.24409 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009420 B = 0.005177 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.786596 B = 5406.935871 C = 7630.535035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.131 3.869 4 N -0.645 5.645 5 C 0.598 3.402 6 O -0.519 6.519 7 C -0.264 4.264 8 C 0.010 3.990 9 C -0.219 4.219 10 C 0.336 3.664 11 O -0.309 6.309 12 C 0.037 3.963 13 N -0.524 5.524 14 C 0.123 3.877 15 C 0.151 3.849 16 C -0.202 4.202 17 C 0.145 3.855 18 N -0.590 5.590 19 C -0.242 4.242 20 H 0.070 0.930 21 C 0.004 3.996 22 N -0.902 5.902 23 Si 0.895 3.105 24 H -0.276 1.276 25 H -0.290 1.290 26 H -0.292 1.292 27 C 0.173 3.827 28 C -0.223 4.223 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.276 0.724 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.062 0.938 46 H 0.025 0.975 47 H 0.253 0.747 48 H 0.096 0.904 49 H 0.027 0.973 50 H 0.108 0.892 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.509 5.900 8.525 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.008 3.992 4 N -0.379 5.379 5 C 0.388 3.612 6 O -0.395 6.395 7 C -0.270 4.270 8 C -0.015 4.015 9 C -0.240 4.240 10 C 0.157 3.843 11 O -0.216 6.216 12 C -0.058 4.058 13 N -0.247 5.247 14 C -0.030 4.030 15 C 0.048 3.952 16 C -0.242 4.242 17 C 0.018 3.982 18 N -0.313 5.313 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.194 4.194 22 N -0.547 5.547 23 Si 0.725 3.275 24 H -0.200 1.200 25 H -0.216 1.216 26 H -0.219 1.219 27 C 0.046 3.954 28 C -0.262 4.262 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.289 0.711 42 H 0.111 0.889 43 H 0.082 0.918 44 H 0.118 0.882 45 H 0.081 0.919 46 H 0.043 0.957 47 H 0.063 0.937 48 H 0.114 0.886 49 H 0.046 0.954 50 H 0.125 0.875 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.933 5.775 8.485 13.606 hybrid contribution 0.535 -0.052 0.495 0.731 sum -8.398 5.723 8.980 13.562 Atomic orbital electron populations 1.21701 0.95643 1.01708 1.01567 1.21984 0.95543 0.97719 1.03096 1.21395 0.78831 0.96738 1.02193 1.47723 1.05918 1.78060 1.06239 1.17883 0.81800 0.79042 0.82444 1.90700 1.67982 1.41950 1.38845 1.21067 1.02070 1.07469 0.96415 1.21317 0.93248 0.90462 0.96521 1.20863 0.98472 1.06390 0.98230 1.20403 0.86214 0.87192 0.90450 1.86142 1.37228 1.61546 1.36662 1.22942 0.95422 1.02953 0.84511 1.67885 1.19132 1.12274 1.25426 1.26725 0.86189 0.87953 1.02164 1.21181 0.93316 0.96463 0.84198 1.23637 1.01755 0.97054 1.01723 1.20924 0.89200 0.96105 0.92009 1.44195 1.02657 1.15221 1.69198 1.19151 0.86786 0.92095 1.39113 0.91252 1.24955 0.98671 0.96574 0.99227 1.70042 1.31730 1.04918 1.47967 0.86328 0.85719 0.78211 0.77205 1.20049 1.21648 1.21879 1.20796 0.99909 0.87304 0.87364 1.24081 0.96551 1.00935 1.04649 0.92843 0.92746 0.92682 0.91695 0.91090 0.91148 0.90678 0.83894 0.84108 0.91449 0.91730 0.88930 0.71068 0.88922 0.91754 0.88216 0.91921 0.95741 0.93666 0.88635 0.95446 0.87481 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.14 -1.67 6.25 -26.73 -0.17 -1.84 16 3 C 0.13 1.58 5.40 -4.05 -0.02 1.55 16 4 N -0.64 -9.55 2.42 -167.26 -0.41 -9.95 16 5 C 0.60 10.05 5.90 -12.43 -0.07 9.97 16 6 O -0.52 -9.65 17.20 5.30 0.09 -9.56 16 7 C -0.26 -4.43 5.58 -104.82 -0.58 -5.01 16 8 C 0.01 0.15 9.72 -38.92 -0.38 -0.23 16 9 C -0.22 -3.15 10.02 -39.34 -0.39 -3.55 16 10 C 0.34 5.64 7.49 -16.96 -0.13 5.51 16 11 O -0.31 -4.83 10.46 -18.18 -0.19 -5.03 16 12 C 0.04 0.53 10.37 101.05 1.05 1.57 16 13 N -0.52 -9.80 9.18 -53.31 -0.49 -10.29 16 14 C 0.12 2.23 5.21 -17.14 -0.09 2.14 16 15 C 0.15 2.36 2.41 -67.89 -0.16 2.20 16 16 C -0.20 -3.20 5.11 -26.61 -0.14 -3.33 16 17 C 0.14 2.69 6.51 -3.71 -0.02 2.67 16 18 N -0.59 -13.24 2.47 -172.32 -0.43 -13.67 16 19 C -0.24 -6.12 9.58 -15.06 -0.14 -6.26 16 20 H 0.07 1.75 7.90 -52.49 -0.41 1.34 16 21 C 0.00 0.11 4.85 -17.43 -0.08 0.02 16 22 N -0.90 -24.88 11.28 55.49 0.63 -24.25 16 23 Si 0.90 20.91 29.60 -169.99 -5.03 15.88 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.17 3.78 5.32 -3.71 -0.02 3.76 16 28 C -0.22 -4.10 4.30 -26.61 -0.11 -4.21 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.07 0.83 7.99 -51.93 -0.41 0.42 16 35 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 36 H 0.14 1.81 7.97 -52.48 -0.42 1.39 16 37 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 39 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.28 5.05 0.57 -83.54 -0.05 5.01 16 42 H 0.09 1.38 8.06 -51.93 -0.42 0.96 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.10 1.74 3.63 -78.84 -0.29 1.45 16 45 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 48 H 0.10 2.40 6.04 -51.93 -0.31 2.09 16 49 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.11 2.11 3.00 -99.39 -0.30 1.81 16 51 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -29.23 393.02 -9.08 -38.31 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -8.07 Total: 8.65 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.11 Total: 3.98 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.69 Total: -58.16 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.10 Total: -14.58 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.23 -9.08 -38.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690135349.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.197 kcal (2) G-P(sol) polarization free energy of solvation -29.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds