Wall clock time and date at job start Wed Apr 1 2020 04:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47193 * 2 1 4 4 N 1.46490 * 109.47029 * 180.02562 * 3 2 1 5 5 C 1.34778 * 119.99987 * 264.38337 * 4 3 2 6 6 O 1.21577 * 119.99725 * 43.07918 * 5 4 3 7 7 C 1.47620 * 120.00198 * 223.07123 * 5 4 3 8 8 C 1.40278 * 120.49675 * 150.95152 * 7 5 4 9 9 C 1.37954 * 118.36154 * 180.02562 * 8 7 5 10 10 C 1.39170 * 119.25655 * 359.97438 * 9 8 7 11 11 O 1.35497 * 119.52203 * 179.97438 * 10 9 8 12 12 C 1.42901 * 116.99838 * 180.02562 * 11 10 9 13 13 N 1.32399 * 120.95408 * 0.02562 * 10 9 8 14 14 C 1.31669 * 121.79539 * 359.70151 * 13 10 9 15 15 C 1.46504 * 120.00445 * 84.38966 * 4 3 2 16 16 C 1.53034 * 109.45077 * 92.01665 * 15 4 3 17 17 C 1.53193 * 109.31179 * 181.38344 * 16 15 4 18 18 N 1.46921 * 108.77596 * 305.36262 * 17 16 15 19 19 C 1.36938 * 120.63375 * 233.63019 * 18 17 16 20 20 H 1.07996 * 120.00068 * 26.65710 * 19 18 17 21 21 C 1.38819 * 119.99968 * 206.65475 * 19 18 17 22 22 N 1.31617 * 119.99772 * 19.81710 * 21 19 18 23 23 Si 1.86798 * 119.99810 * 199.82085 * 21 19 18 24 24 H 1.48496 * 109.47263 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47210 * 120.00026 * 23 21 19 26 26 H 1.48494 * 109.47004 * 240.00038 * 23 21 19 27 27 C 1.46929 * 118.73661 * 53.61170 * 18 17 16 28 28 C 1.53040 * 109.46238 * 212.08381 * 15 4 3 29 29 H 1.09001 * 109.46638 * 299.99923 * 1 2 3 30 30 H 1.09003 * 109.46825 * 59.99884 * 1 2 3 31 31 H 1.08994 * 109.46938 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46638 * 240.00076 * 2 1 3 33 33 H 1.09003 * 109.46825 * 120.00116 * 2 1 3 34 34 H 1.08996 * 109.47195 * 59.99727 * 3 2 1 35 35 H 1.08997 * 109.46995 * 300.00118 * 3 2 1 36 36 H 1.08007 * 120.82163 * 359.97438 * 8 7 5 37 37 H 1.08001 * 120.37185 * 179.97438 * 9 8 7 38 38 H 1.08999 * 109.47231 * 299.99084 * 12 11 10 39 39 H 1.08994 * 109.47345 * 59.99854 * 12 11 10 40 40 H 1.09004 * 109.47068 * 180.02562 * 12 11 10 41 41 H 1.08000 * 119.68729 * 180.28848 * 14 13 10 42 42 H 1.09004 * 109.45051 * 332.05373 * 15 4 3 43 43 H 1.09005 * 109.49914 * 301.33325 * 16 15 4 44 44 H 1.09003 * 109.49684 * 61.43310 * 16 15 4 45 45 H 1.09005 * 109.58787 * 185.57955 * 17 16 15 46 46 H 1.09001 * 109.70552 * 65.22100 * 17 16 15 47 47 H 0.96998 * 119.99522 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.58923 * 186.60578 * 27 18 17 49 49 H 1.09001 * 109.70172 * 66.24700 * 27 18 17 50 50 H 1.08994 * 109.49347 * 298.57689 * 28 15 4 51 51 H 1.08998 * 109.49748 * 58.67140 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1794 1.5565 1.1607 6 8 3.8177 0.9298 2.1377 7 6 5.3573 2.4422 1.2464 8 6 5.7020 3.0527 2.4614 9 6 6.8112 3.8724 2.4914 10 6 7.5463 4.0651 1.3254 11 8 8.6364 4.8695 1.3487 12 6 9.3508 5.0295 0.1214 13 7 7.1953 3.4744 0.1937 14 6 6.1475 2.6803 0.1215 15 6 4.2371 1.3186 -1.2636 16 6 4.5357 2.7132 -1.8184 17 6 5.2707 2.5797 -3.1558 18 7 6.4608 1.7408 -2.9597 19 6 7.6989 2.1865 -3.3388 20 1 7.9036 3.2463 -3.3747 21 6 8.6908 1.2761 -3.6770 22 7 8.3675 0.0455 -4.0137 23 14 10.4843 1.7977 -3.6541 24 1 10.5805 3.2219 -3.2449 25 1 11.2331 0.9532 -2.6890 26 1 11.0651 1.6327 -5.0107 27 6 6.2974 0.4146 -2.3487 28 6 5.5509 0.5723 -1.0203 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 5.1131 2.8859 3.3512 37 1 7.1058 4.3593 3.4093 38 1 9.7107 4.0585 -0.2188 39 1 8.6882 5.4558 -0.6318 40 1 10.1989 5.6960 0.2789 41 1 5.8947 2.2124 -0.8185 42 1 3.6320 0.7642 -1.9810 43 1 3.6006 3.2526 -1.9694 44 1 5.1614 3.2593 -1.1124 45 1 5.5730 3.5664 -3.5068 46 1 4.6137 2.1156 -3.8915 47 1 9.0606 -0.5905 -4.2503 48 1 7.2771 -0.0273 -2.1670 49 1 5.7241 -0.2292 -3.0158 50 1 6.1669 1.1386 -0.3218 51 1 5.3383 -0.4120 -0.6033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690135349.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:13 Heat of formation + Delta-G solvation = 67.654557 kcal Electronic energy + Delta-G solvation = -33405.694026 eV Core-core repulsion = 29309.780968 eV Total energy + Delta-G solvation = -4095.913058 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.02241 -40.94097 -39.59092 -38.64702 -36.96950 -35.27425 -33.70799 -33.44574 -32.25369 -31.68866 -31.18443 -28.52590 -27.37418 -26.86764 -25.17654 -24.64945 -24.03041 -23.67018 -22.45119 -21.60268 -20.37999 -19.37933 -18.99611 -18.36346 -17.70034 -17.22922 -17.01547 -16.93414 -16.48786 -16.27677 -15.81078 -15.63875 -15.41820 -15.21256 -15.01943 -14.67520 -14.59036 -14.30071 -14.15736 -14.09484 -13.94091 -13.51633 -13.19833 -13.11936 -12.92756 -12.86931 -12.78781 -12.62898 -12.56648 -12.39595 -12.18827 -11.94203 -11.80293 -11.77661 -11.60578 -11.49671 -11.18674 -10.94036 -10.91880 -10.52718 -10.14123 -9.61489 -9.32681 -8.67621 -7.84386 -5.23837 -0.34377 0.18113 1.43244 1.45280 1.49761 1.57874 1.92609 2.06314 2.54432 2.67670 3.23510 3.36063 3.40950 3.57577 3.70210 3.79696 3.87074 3.99971 4.04617 4.10923 4.15535 4.21143 4.33857 4.40679 4.43221 4.43744 4.51133 4.57069 4.63139 4.66193 4.68957 4.77860 4.83849 4.86730 4.92597 4.96275 5.04415 5.07688 5.14830 5.22951 5.23916 5.28694 5.31319 5.43517 5.47605 5.64501 5.74350 5.78700 6.10707 6.29946 6.42457 6.79365 6.90578 7.17791 7.87805 8.37595 9.23495 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009420 B = 0.005177 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.786596 B = 5406.935871 C = 7630.535035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.125 3.875 4 N -0.639 5.639 5 C 0.598 3.402 6 O -0.541 6.541 7 C -0.273 4.273 8 C 0.013 3.987 9 C -0.205 4.205 10 C 0.319 3.681 11 O -0.308 6.308 12 C 0.037 3.963 13 N -0.553 5.553 14 C 0.110 3.890 15 C 0.162 3.838 16 C -0.189 4.189 17 C 0.143 3.857 18 N -0.602 5.602 19 C -0.233 4.233 20 H 0.068 0.932 21 C -0.046 4.046 22 N -0.933 5.933 23 Si 0.944 3.056 24 H -0.261 1.261 25 H -0.299 1.299 26 H -0.296 1.296 27 C 0.184 3.816 28 C -0.213 4.213 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.167 0.833 37 H 0.174 0.826 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.129 0.871 41 H 0.266 0.734 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.062 0.938 46 H 0.034 0.966 47 H 0.247 0.753 48 H 0.057 0.943 49 H 0.015 0.985 50 H 0.100 0.900 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.207 7.660 9.668 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.180 4.180 3 C 0.004 3.996 4 N -0.373 5.373 5 C 0.388 3.612 6 O -0.419 6.419 7 C -0.279 4.279 8 C -0.013 4.013 9 C -0.225 4.225 10 C 0.140 3.860 11 O -0.215 6.215 12 C -0.058 4.058 13 N -0.277 5.277 14 C -0.044 4.044 15 C 0.059 3.941 16 C -0.228 4.228 17 C 0.017 3.983 18 N -0.325 5.325 19 C -0.364 4.364 20 H 0.085 0.915 21 C -0.241 4.241 22 N -0.580 5.580 23 Si 0.774 3.226 24 H -0.185 1.185 25 H -0.227 1.227 26 H -0.223 1.223 27 C 0.057 3.943 28 C -0.251 4.251 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.184 0.816 37 H 0.191 0.809 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.147 0.853 41 H 0.280 0.720 42 H 0.125 0.875 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.080 0.920 46 H 0.052 0.948 47 H 0.056 0.944 48 H 0.075 0.925 49 H 0.033 0.967 50 H 0.117 0.883 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.669 7.567 9.625 16.240 hybrid contribution 1.037 -0.551 0.171 1.186 sum -9.632 7.016 9.796 15.426 Atomic orbital electron populations 1.21662 0.93568 1.02305 1.02541 1.21919 0.97316 0.97085 1.01632 1.21677 0.76837 0.97341 1.03737 1.47689 1.07065 1.77322 1.05175 1.17961 0.81728 0.78799 0.82668 1.90693 1.68639 1.42906 1.39643 1.21182 1.02052 1.07763 0.96896 1.21629 0.93355 0.89700 0.96575 1.21205 0.97397 1.05380 0.98546 1.20751 0.86868 0.87534 0.90832 1.86150 1.36994 1.61303 1.37030 1.23033 0.96220 1.02319 0.84186 1.67776 1.19753 1.13156 1.26968 1.26548 0.86744 0.88630 1.02458 1.21001 0.92124 0.96183 0.84824 1.23455 1.02630 0.97216 0.99533 1.21059 0.88061 0.95297 0.93909 1.44323 1.03202 1.15612 1.69390 1.19348 0.88093 0.91914 1.37018 0.91477 1.25515 1.01536 0.96811 1.00250 1.70161 1.32067 1.05757 1.50011 0.85539 0.82233 0.78377 0.76478 1.18546 1.22689 1.22300 1.20478 0.98099 0.86878 0.88813 1.23871 0.97739 1.01367 1.02158 0.92359 0.91246 0.92358 0.92120 0.93610 0.90650 0.88014 0.81559 0.80871 0.93854 0.92453 0.85282 0.71966 0.87460 0.88428 0.89282 0.91953 0.94815 0.94417 0.92508 0.96709 0.88299 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.91 71.99 0.71 -1.52 16 2 C -0.14 -2.98 6.25 30.60 0.19 -2.79 16 3 C 0.13 2.66 5.40 86.38 0.47 3.13 16 4 N -0.64 -17.65 2.42 -801.35 -1.94 -19.59 16 5 C 0.60 19.23 5.90 86.72 0.51 19.75 16 6 O -0.54 -19.47 17.20 -3.96 -0.07 -19.54 16 7 C -0.27 -8.81 5.58 -20.00 -0.11 -8.92 16 8 C 0.01 0.35 9.72 22.70 0.22 0.57 16 9 C -0.21 -5.42 10.02 22.43 0.22 -5.20 16 10 C 0.32 10.33 7.49 84.83 0.64 10.96 16 11 O -0.31 -9.22 10.46 -87.98 -0.92 -10.14 16 12 C 0.04 1.03 10.37 113.37 1.18 2.21 16 13 N -0.55 -20.57 9.18 -435.46 -4.00 -24.56 16 14 C 0.11 3.92 5.21 85.03 0.44 4.36 16 15 C 0.16 4.80 2.41 45.02 0.11 4.91 16 16 C -0.19 -5.60 5.11 30.67 0.16 -5.44 16 17 C 0.14 5.14 6.51 86.36 0.56 5.71 16 18 N -0.60 -27.30 2.47 -699.09 -1.73 -29.03 16 19 C -0.23 -11.99 9.58 84.03 0.81 -11.18 16 20 H 0.07 3.42 7.90 -2.91 -0.02 3.40 16 21 C -0.05 -2.48 4.85 84.86 0.41 -2.07 16 22 N -0.93 -53.33 11.28 21.65 0.24 -53.08 16 23 Si 0.94 43.99 29.60 68.60 2.03 46.02 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 26 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 27 C 0.18 8.28 5.32 86.36 0.46 8.74 16 28 C -0.21 -7.84 4.30 30.67 0.13 -7.71 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 34 H 0.08 1.56 7.99 -2.39 -0.02 1.55 16 35 H 0.10 1.66 8.11 -2.39 -0.02 1.64 16 36 H 0.17 3.72 7.97 -2.91 -0.02 3.69 16 37 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 38 H 0.04 1.40 8.10 -2.39 -0.02 1.38 16 39 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 40 H 0.13 2.55 8.14 -2.38 -0.02 2.53 16 41 H 0.27 9.69 0.57 -32.08 -0.02 9.67 16 42 H 0.11 2.93 8.06 -2.38 -0.02 2.91 16 43 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 44 H 0.09 2.98 3.63 -27.66 -0.10 2.88 16 45 H 0.06 2.24 7.93 -2.38 -0.02 2.22 16 46 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 48 H 0.06 3.00 6.04 -2.39 -0.01 2.99 16 49 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.10 3.95 3.00 -46.97 -0.14 3.81 16 51 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -65.05 393.02 1.42 -63.62 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.70 Total: 30.81 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 7.11 Total: 15.50 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -7.42 Total: -126.27 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.99 Total: -29.68 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -65.05 1.42 -63.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690135349.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.277 kcal (2) G-P(sol) polarization free energy of solvation -65.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds