Wall clock time and date at job start Wed Apr 1 2020 04:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47220 * 2 1 4 4 N 1.46495 * 109.47214 * 179.97438 * 3 2 1 5 5 C 1.36938 * 119.99918 * 270.00003 * 4 3 2 6 6 H 1.07995 * 120.00129 * 39.61807 * 5 4 3 7 7 C 1.38810 * 119.99771 * 219.61445 * 5 4 3 8 8 N 1.31618 * 120.00343 * 19.36214 * 7 5 4 9 9 Si 1.86804 * 120.00068 * 199.35696 * 7 5 4 10 10 H 1.48504 * 109.46905 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47034 * 120.00205 * 9 7 5 12 12 H 1.48497 * 109.47237 * 240.00114 * 9 7 5 13 13 C 1.46499 * 119.99740 * 89.99915 * 4 3 2 14 14 C 1.53002 * 109.47342 * 265.06082 * 13 4 3 15 15 N 1.46499 * 109.47342 * 180.02562 * 14 13 4 16 16 C 1.34774 * 119.99971 * 179.97438 * 15 14 13 17 17 O 1.21547 * 119.99919 * 0.02562 * 16 15 14 18 18 C 1.47859 * 119.99892 * 180.02562 * 16 15 14 19 19 C 1.39702 * 120.07533 * 359.72847 * 18 16 15 20 20 C 1.38058 * 120.14613 * 179.74290 * 19 18 16 21 21 C 1.38098 * 120.29290 * 0.50797 * 20 19 18 22 22 C 1.39654 * 120.14741 * 359.76968 * 21 20 19 23 23 C 1.47864 * 120.07711 * 179.97438 * 22 21 20 24 24 O 1.21549 * 120.00048 * 140.68105 * 23 22 21 25 25 N 1.34776 * 119.99735 * 320.68557 * 23 22 21 26 26 C 1.46506 * 119.99959 * 184.69912 * 25 23 22 27 27 C 1.46498 * 120.00313 * 4.69839 * 25 23 22 28 28 C 1.39292 * 120.07509 * 180.02562 * 18 16 15 29 29 H 1.08997 * 109.47410 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47007 * 300.00558 * 1 2 3 31 31 H 1.09002 * 109.47196 * 59.99794 * 1 2 3 32 32 H 1.08993 * 109.47314 * 240.00262 * 2 1 3 33 33 H 1.08995 * 109.46998 * 119.99546 * 2 1 3 34 34 H 1.09002 * 109.47158 * 59.99496 * 3 2 1 35 35 H 1.09002 * 109.47205 * 300.00201 * 3 2 1 36 36 H 0.96999 * 120.00676 * 180.02562 * 8 7 5 37 37 H 1.09005 * 109.47113 * 145.06609 * 13 4 3 38 38 H 1.08997 * 109.47434 * 25.06574 * 13 4 3 39 39 H 1.09005 * 109.46586 * 60.00204 * 14 13 4 40 40 H 1.08997 * 109.47258 * 300.00600 * 14 13 4 41 41 H 0.96996 * 119.99661 * 0.02562 * 15 14 13 42 42 H 1.08006 * 119.92655 * 359.97438 * 19 18 16 43 43 H 1.08000 * 119.84964 * 180.26038 * 20 19 18 44 44 H 1.08002 * 119.92206 * 179.74543 * 21 20 19 45 45 H 1.08995 * 109.47188 * 89.99889 * 26 25 23 46 46 H 1.09003 * 109.46778 * 210.00009 * 26 25 23 47 47 H 1.08993 * 109.47015 * 329.99522 * 26 25 23 48 48 H 1.08997 * 109.47679 * 86.80806 * 27 25 23 49 49 H 1.09000 * 109.47222 * 206.82017 * 27 25 23 50 50 H 1.09006 * 109.46923 * 326.81457 * 27 25 23 51 51 H 1.08007 * 120.14243 * 359.97438 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4427 1.1868 6 1 3.8349 0.8465 2.0146 7 6 5.3381 2.2093 1.3252 8 7 5.5677 3.2065 0.4974 9 14 6.5586 1.8256 2.6864 10 1 6.0723 0.6647 3.4745 11 1 7.8791 1.5001 2.0900 12 1 6.6950 3.0065 3.5763 13 6 4.2380 1.4423 -1.2678 14 6 4.6007 0.0051 -1.6471 15 7 5.3342 0.0050 -2.9152 16 6 5.7589 -1.1579 -3.4479 17 8 5.5330 -2.2066 -2.8764 18 6 6.4997 -1.1580 -4.7275 19 6 6.7553 0.0459 -5.3886 20 6 7.4515 0.0480 -6.5808 21 6 7.8906 -1.1391 -7.1331 22 6 7.6368 -2.3502 -6.4857 23 6 8.1072 -3.6204 -7.0788 24 8 8.5545 -4.4959 -6.3641 25 7 8.0399 -3.8072 -8.4118 26 6 8.4089 -5.1020 -8.9896 27 6 7.5977 -2.7157 -9.2832 28 6 6.9389 -2.3590 -5.2797 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9564 -0.8900 36 1 6.3707 3.7419 0.5939 37 1 5.1493 2.0308 -1.1610 38 1 3.6138 1.8776 -2.0482 39 1 3.6894 -0.5834 -1.7539 40 1 5.2249 -0.4301 -0.8667 41 1 5.5148 0.8419 -3.3711 42 1 6.4108 0.9774 -4.9641 43 1 7.6501 0.9819 -7.0856 44 1 8.4311 -1.1308 -8.0681 45 1 7.5281 -5.7421 -9.0390 46 1 8.8059 -4.9519 -9.9936 47 1 9.1674 -5.5751 -8.3660 48 1 8.4522 -2.0926 -9.5473 49 1 7.1563 -3.1303 -10.1894 50 1 6.8555 -2.1118 -8.7609 51 1 6.7401 -3.2929 -4.7749 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691196610.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:33 Heat of formation + Delta-G solvation = -18.851003 kcal Electronic energy + Delta-G solvation = -30030.924601 eV Core-core repulsion = 25931.260380 eV Total energy + Delta-G solvation = -4099.664221 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.79575 -39.60092 -37.96240 -36.47417 -35.98079 -34.34981 -32.91837 -32.03379 -31.33591 -30.73623 -28.63992 -27.91107 -26.78837 -25.57649 -24.35914 -23.47957 -22.75225 -21.08367 -20.81564 -20.21351 -19.65887 -18.06084 -16.98338 -16.75559 -16.47132 -16.24290 -16.10873 -15.48512 -15.20584 -14.74314 -14.59734 -14.43720 -14.27986 -13.93016 -13.84617 -13.57094 -13.44826 -13.18005 -13.10888 -12.96247 -12.85328 -12.73524 -12.49732 -12.30139 -11.93480 -11.60820 -11.58063 -11.49058 -11.18223 -10.95138 -10.75945 -10.45135 -10.36013 -10.26421 -10.10151 -9.89590 -9.81002 -9.58723 -9.31571 -9.23304 -9.09106 -8.58881 -8.48100 -6.61482 -5.83484 -3.47620 0.48348 0.88297 2.34283 2.56009 2.99812 3.33191 3.42991 3.45261 3.48091 3.75645 4.07513 4.42205 4.45662 4.57504 4.64670 4.78949 4.81686 4.92681 4.94984 5.13676 5.15289 5.22017 5.27360 5.35658 5.44112 5.46607 5.63622 5.65531 5.75087 5.91768 5.98249 6.00022 6.02799 6.05830 6.10997 6.21877 6.28241 6.40721 6.48226 6.52630 6.61069 6.65652 6.82911 6.88541 6.96513 7.00853 7.16287 7.52101 7.78350 7.79630 7.85777 8.47103 8.50847 9.13282 9.73953 10.32627 11.14644 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.002235 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.025285 B =12525.245919 C =13355.284528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.260 4.260 6 H 0.061 0.939 7 C 0.015 3.985 8 N -0.888 5.888 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.289 1.289 13 C 0.136 3.864 14 C 0.098 3.902 15 N -0.712 5.712 16 C 0.549 3.451 17 O -0.539 6.539 18 C -0.129 4.129 19 C -0.063 4.063 20 C -0.132 4.132 21 C -0.077 4.077 22 C -0.143 4.143 23 C 0.561 3.439 24 O -0.527 6.527 25 N -0.620 5.620 26 C 0.084 3.916 27 C 0.070 3.930 28 C -0.009 4.009 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.032 0.968 36 H 0.254 0.746 37 H 0.098 0.902 38 H 0.030 0.970 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.396 0.604 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.057 0.943 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.061 0.939 49 H 0.074 0.926 50 H 0.081 0.919 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.308 -5.895 -23.161 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.022 3.978 4 N -0.299 5.299 5 C -0.390 4.390 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.530 5.530 9 Si 0.726 3.274 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.008 3.992 14 C -0.027 4.027 15 N -0.363 5.363 16 C 0.334 3.666 17 O -0.417 6.417 18 C -0.132 4.132 19 C -0.082 4.082 20 C -0.150 4.150 21 C -0.096 4.096 22 C -0.146 4.146 23 C 0.350 3.650 24 O -0.403 6.403 25 N -0.354 5.354 26 C -0.058 4.058 27 C -0.072 4.072 28 C -0.028 4.028 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.230 0.770 42 H 0.153 0.847 43 H 0.154 0.846 44 H 0.155 0.845 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.079 0.921 49 H 0.092 0.908 50 H 0.100 0.900 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.483 -6.964 -22.319 23.511 hybrid contribution 0.827 0.256 0.316 0.922 sum 3.311 -6.707 -22.003 23.240 Atomic orbital electron populations 1.21720 0.97319 1.00404 1.01005 1.22210 0.93860 1.00998 1.01536 1.20954 0.85026 0.92843 0.98996 1.43580 0.99412 1.85121 1.01769 1.19052 1.07185 1.21180 0.91564 0.92110 1.25243 1.00843 0.94597 0.97871 1.69951 1.26711 1.17123 1.39220 0.86332 0.81369 0.77984 0.81764 1.19932 1.21352 1.21551 1.21075 0.99658 0.91516 0.86935 1.22497 0.94952 1.02609 0.82667 1.46058 1.56874 1.08037 1.25334 1.18171 0.79487 0.84480 0.84442 1.90779 1.57208 1.31376 1.62345 1.20096 1.02550 0.93909 0.96695 1.21625 0.94860 0.97465 0.94233 1.21063 0.99459 0.98221 0.96215 1.21750 0.97180 0.91531 0.99141 1.19726 1.04247 0.93304 0.97309 1.18372 0.78094 0.86898 0.81651 1.90814 1.44796 1.44463 1.60242 1.47615 1.67247 1.14242 1.06270 1.21681 1.01233 0.84148 0.98727 1.22193 1.00050 0.90171 0.94816 1.21290 0.91172 0.98717 0.91656 0.93816 0.93194 0.93464 0.92992 0.92367 0.93251 0.94987 0.93569 0.88475 0.95203 0.92756 0.91453 0.76967 0.84703 0.84559 0.84514 0.92481 0.91050 0.90221 0.92092 0.90759 0.90009 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.15 -2.65 6.26 -26.73 -0.17 -2.82 16 3 C 0.15 3.04 5.71 -4.04 -0.02 3.01 16 4 N -0.58 -13.80 2.42 -173.24 -0.42 -14.22 16 5 C -0.26 -6.90 9.42 -15.06 -0.14 -7.05 16 6 H 0.06 1.64 7.90 -52.49 -0.41 1.23 16 7 C 0.01 0.40 5.03 -17.43 -0.09 0.31 16 8 N -0.89 -24.42 11.43 55.49 0.63 -23.79 16 9 Si 0.90 21.43 29.60 -169.99 -5.03 16.40 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 13 C 0.14 2.94 5.49 -4.04 -0.02 2.92 16 14 C 0.10 1.98 5.97 -4.04 -0.02 1.95 16 15 N -0.71 -11.92 5.51 -61.25 -0.34 -12.26 16 16 C 0.55 9.59 7.77 -12.32 -0.10 9.49 16 17 O -0.54 -11.58 16.34 5.32 0.09 -11.49 16 18 C -0.13 -1.78 5.87 -105.02 -0.62 -2.40 16 19 C -0.06 -0.64 9.54 -39.10 -0.37 -1.02 16 20 C -0.13 -1.04 10.02 -39.70 -0.40 -1.44 16 21 C -0.08 -0.64 7.54 -39.10 -0.29 -0.93 16 22 C -0.14 -1.64 5.23 -105.02 -0.55 -2.19 16 23 C 0.56 6.91 7.35 -12.32 -0.09 6.82 16 24 O -0.53 -8.58 16.47 5.32 0.09 -8.49 16 25 N -0.62 -5.29 3.27 -190.64 -0.62 -5.91 16 26 C 0.08 0.58 10.46 59.85 0.63 1.20 16 27 C 0.07 0.33 8.88 59.85 0.53 0.87 16 28 C -0.01 -0.12 9.17 -38.78 -0.36 -0.48 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.96 6.61 -51.93 -0.34 0.62 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.05 1.04 8.04 -51.93 -0.42 0.63 16 35 H 0.03 0.62 7.86 -51.93 -0.41 0.21 16 36 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.10 2.37 5.56 -51.93 -0.29 2.08 16 38 H 0.03 0.59 7.84 -51.93 -0.41 0.18 16 39 H 0.05 1.12 6.61 -51.93 -0.34 0.78 16 40 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 41 H 0.40 5.41 6.50 -40.82 -0.27 5.15 16 42 H 0.14 1.14 6.39 -52.48 -0.34 0.80 16 43 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.14 0.73 5.34 -52.49 -0.28 0.45 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.28 8.07 -51.93 -0.42 -0.13 16 47 H 0.08 0.67 7.36 -51.93 -0.38 0.29 16 48 H 0.06 0.19 6.97 -51.93 -0.36 -0.17 16 49 H 0.07 0.22 8.05 -51.93 -0.42 -0.20 16 50 H 0.08 0.41 5.73 -51.93 -0.30 0.11 16 51 H 0.14 2.28 7.64 -52.48 -0.40 1.88 16 LS Contribution 413.65 15.07 6.23 6.23 Total: -1.00 -34.23 413.65 -8.96 -43.19 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.88 Total: 3.86 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -1.71 Total: 6.47 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.75 Total: -56.17 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.17 Total: -19.98 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.23 -8.96 -43.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691196610.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.335 kcal (2) G-P(sol) polarization free energy of solvation -34.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds