Wall clock time and date at job start Wed Apr 1 2020 04:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47220 * 2 1 4 4 N 1.46495 * 109.47214 * 179.97438 * 3 2 1 5 5 C 1.36938 * 119.99918 * 270.00003 * 4 3 2 6 6 H 1.07995 * 120.00129 * 39.61807 * 5 4 3 7 7 C 1.38810 * 119.99771 * 219.61445 * 5 4 3 8 8 N 1.31618 * 120.00343 * 19.36214 * 7 5 4 9 9 Si 1.86804 * 120.00068 * 199.35696 * 7 5 4 10 10 H 1.48504 * 109.46905 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47034 * 120.00205 * 9 7 5 12 12 H 1.48497 * 109.47237 * 240.00114 * 9 7 5 13 13 C 1.46499 * 119.99740 * 89.99915 * 4 3 2 14 14 C 1.53002 * 109.47342 * 265.06082 * 13 4 3 15 15 N 1.46499 * 109.47342 * 180.02562 * 14 13 4 16 16 C 1.34774 * 119.99971 * 179.97438 * 15 14 13 17 17 O 1.21547 * 119.99919 * 0.02562 * 16 15 14 18 18 C 1.47859 * 119.99892 * 180.02562 * 16 15 14 19 19 C 1.39702 * 120.07533 * 359.72847 * 18 16 15 20 20 C 1.38058 * 120.14613 * 179.74290 * 19 18 16 21 21 C 1.38098 * 120.29290 * 0.50797 * 20 19 18 22 22 C 1.39654 * 120.14741 * 359.76968 * 21 20 19 23 23 C 1.47864 * 120.07711 * 179.97438 * 22 21 20 24 24 O 1.21549 * 120.00048 * 140.68105 * 23 22 21 25 25 N 1.34776 * 119.99735 * 320.68557 * 23 22 21 26 26 C 1.46506 * 119.99959 * 184.69912 * 25 23 22 27 27 C 1.46498 * 120.00313 * 4.69839 * 25 23 22 28 28 C 1.39292 * 120.07509 * 180.02562 * 18 16 15 29 29 H 1.08997 * 109.47410 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47007 * 300.00558 * 1 2 3 31 31 H 1.09002 * 109.47196 * 59.99794 * 1 2 3 32 32 H 1.08993 * 109.47314 * 240.00262 * 2 1 3 33 33 H 1.08995 * 109.46998 * 119.99546 * 2 1 3 34 34 H 1.09002 * 109.47158 * 59.99496 * 3 2 1 35 35 H 1.09002 * 109.47205 * 300.00201 * 3 2 1 36 36 H 0.96999 * 120.00676 * 180.02562 * 8 7 5 37 37 H 1.09005 * 109.47113 * 145.06609 * 13 4 3 38 38 H 1.08997 * 109.47434 * 25.06574 * 13 4 3 39 39 H 1.09005 * 109.46586 * 60.00204 * 14 13 4 40 40 H 1.08997 * 109.47258 * 300.00600 * 14 13 4 41 41 H 0.96996 * 119.99661 * 0.02562 * 15 14 13 42 42 H 1.08006 * 119.92655 * 359.97438 * 19 18 16 43 43 H 1.08000 * 119.84964 * 180.26038 * 20 19 18 44 44 H 1.08002 * 119.92206 * 179.74543 * 21 20 19 45 45 H 1.08995 * 109.47188 * 89.99889 * 26 25 23 46 46 H 1.09003 * 109.46778 * 210.00009 * 26 25 23 47 47 H 1.08993 * 109.47015 * 329.99522 * 26 25 23 48 48 H 1.08997 * 109.47679 * 86.80806 * 27 25 23 49 49 H 1.09000 * 109.47222 * 206.82017 * 27 25 23 50 50 H 1.09006 * 109.46923 * 326.81457 * 27 25 23 51 51 H 1.08007 * 120.14243 * 359.97438 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4427 1.1868 6 1 3.8349 0.8465 2.0146 7 6 5.3381 2.2093 1.3252 8 7 5.5677 3.2065 0.4974 9 14 6.5586 1.8256 2.6864 10 1 6.0723 0.6647 3.4745 11 1 7.8791 1.5001 2.0900 12 1 6.6950 3.0065 3.5763 13 6 4.2380 1.4423 -1.2678 14 6 4.6007 0.0051 -1.6471 15 7 5.3342 0.0050 -2.9152 16 6 5.7589 -1.1579 -3.4479 17 8 5.5330 -2.2066 -2.8764 18 6 6.4997 -1.1580 -4.7275 19 6 6.7553 0.0459 -5.3886 20 6 7.4515 0.0480 -6.5808 21 6 7.8906 -1.1391 -7.1331 22 6 7.6368 -2.3502 -6.4857 23 6 8.1072 -3.6204 -7.0788 24 8 8.5545 -4.4959 -6.3641 25 7 8.0399 -3.8072 -8.4118 26 6 8.4089 -5.1020 -8.9896 27 6 7.5977 -2.7157 -9.2832 28 6 6.9389 -2.3590 -5.2797 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9564 -0.8900 36 1 6.3707 3.7419 0.5939 37 1 5.1493 2.0308 -1.1610 38 1 3.6138 1.8776 -2.0482 39 1 3.6894 -0.5834 -1.7539 40 1 5.2249 -0.4301 -0.8667 41 1 5.5148 0.8419 -3.3711 42 1 6.4108 0.9774 -4.9641 43 1 7.6501 0.9819 -7.0856 44 1 8.4311 -1.1308 -8.0681 45 1 7.5281 -5.7421 -9.0390 46 1 8.8059 -4.9519 -9.9936 47 1 9.1674 -5.5751 -8.3660 48 1 8.4522 -2.0926 -9.5473 49 1 7.1563 -3.1303 -10.1894 50 1 6.8555 -2.1118 -8.7609 51 1 6.7401 -3.2929 -4.7749 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691196610.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:32 Heat of formation + Delta-G solvation = -41.310006 kcal Electronic energy + Delta-G solvation = -30031.898497 eV Core-core repulsion = 25931.260380 eV Total energy + Delta-G solvation = -4100.638116 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.72021 -40.81849 -39.01750 -38.20941 -36.76064 -35.89278 -34.62096 -33.12691 -32.40231 -32.19918 -29.88266 -28.79789 -27.47323 -27.34721 -25.71282 -24.53990 -23.87646 -22.60356 -22.07998 -21.74107 -20.75729 -19.16993 -18.50244 -17.83393 -17.42717 -17.17893 -17.10558 -16.96503 -16.62906 -16.40717 -15.92838 -15.67888 -15.46401 -15.25602 -14.87063 -14.68362 -14.52449 -14.47402 -14.28689 -14.25699 -13.70781 -13.64041 -13.37569 -13.32153 -13.08982 -12.97633 -12.91393 -12.67885 -12.66263 -12.50737 -12.41102 -12.23343 -12.04043 -11.88035 -11.68799 -11.37191 -11.23447 -11.04491 -10.56695 -10.27111 -10.16135 -9.93973 -9.75452 -8.57548 -7.84651 -5.52994 -0.38570 -0.03446 1.40360 1.44063 1.45878 1.54267 1.75502 1.97004 2.11939 2.48309 2.73863 3.21107 3.34522 3.53316 3.78208 3.79724 3.95488 4.04685 4.20639 4.25025 4.29031 4.32270 4.37626 4.38652 4.46752 4.49405 4.60541 4.67272 4.72236 4.75030 4.82497 4.85894 4.89529 4.91603 4.99499 5.11374 5.15682 5.17947 5.21107 5.22547 5.26059 5.34905 5.41628 5.43126 5.61706 5.64258 5.70367 5.75426 6.17408 6.44304 6.52064 6.94972 7.11807 7.17114 7.81403 8.33983 9.08619 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.002235 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.025285 B =12525.245919 C =13355.284528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.146 3.854 4 N -0.596 5.596 5 C -0.269 4.269 6 H 0.048 0.952 7 C -0.025 4.025 8 N -0.907 5.907 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.144 3.856 14 C 0.119 3.881 15 N -0.702 5.702 16 C 0.546 3.454 17 O -0.592 6.592 18 C -0.150 4.150 19 C -0.056 4.056 20 C -0.113 4.113 21 C -0.053 4.053 22 C -0.151 4.151 23 C 0.551 3.449 24 O -0.585 6.585 25 N -0.612 5.612 26 C 0.079 3.921 27 C 0.059 3.941 28 C -0.032 4.032 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.049 0.951 36 H 0.254 0.746 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.027 0.973 41 H 0.413 0.587 42 H 0.156 0.844 43 H 0.185 0.815 44 H 0.178 0.822 45 H 0.059 0.941 46 H 0.109 0.891 47 H 0.056 0.944 48 H 0.089 0.911 49 H 0.098 0.902 50 H 0.081 0.919 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.475 -3.819 -26.981 27.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.021 3.979 4 N -0.317 5.317 5 C -0.400 4.400 6 H 0.065 0.935 7 C -0.223 4.223 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.210 1.210 13 C 0.017 3.983 14 C -0.007 4.007 15 N -0.353 5.353 16 C 0.334 3.666 17 O -0.474 6.474 18 C -0.154 4.154 19 C -0.075 4.075 20 C -0.131 4.131 21 C -0.071 4.071 22 C -0.154 4.154 23 C 0.340 3.660 24 O -0.467 6.467 25 N -0.343 5.343 26 C -0.063 4.063 27 C -0.082 4.082 28 C -0.052 4.052 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.251 0.749 42 H 0.173 0.827 43 H 0.202 0.798 44 H 0.195 0.805 45 H 0.078 0.922 46 H 0.127 0.873 47 H 0.075 0.925 48 H 0.107 0.893 49 H 0.117 0.883 50 H 0.099 0.901 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.625 -4.845 -26.212 26.785 hybrid contribution 0.761 -0.404 1.348 1.600 sum 3.387 -5.249 -24.864 25.636 Atomic orbital electron populations 1.21651 0.94179 1.01719 1.02100 1.22045 0.96528 0.98932 1.00118 1.21062 0.83253 0.94302 0.99275 1.43812 1.00873 1.85357 1.01627 1.19133 1.07822 1.20676 0.92334 0.93456 1.25757 1.02005 0.94755 0.99781 1.70023 1.27022 1.17666 1.40311 0.85546 0.79375 0.77692 0.79851 1.20102 1.21720 1.21019 1.20951 0.98926 0.91600 0.86829 1.21986 0.94153 1.01385 0.83200 1.45817 1.56410 1.08940 1.24152 1.18817 0.78777 0.83553 0.85416 1.90743 1.59283 1.33185 1.64150 1.19748 1.04435 0.95515 0.95669 1.21909 0.94371 0.96409 0.94811 1.21585 0.96936 0.99849 0.94704 1.22216 0.95267 0.89953 0.99668 1.19741 1.04331 0.94635 0.96709 1.18649 0.77853 0.86655 0.82840 1.90778 1.47740 1.46231 1.61903 1.47788 1.65453 1.15718 1.05367 1.21842 1.00926 0.83563 0.99942 1.22545 1.01307 0.89528 0.94836 1.21070 0.93421 0.97502 0.93222 0.92430 0.92563 0.91893 0.93672 0.94564 0.94249 0.93243 0.93614 0.90713 0.92903 0.93338 0.95454 0.74895 0.82656 0.79771 0.80507 0.92217 0.87255 0.92508 0.89256 0.88299 0.90068 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.13 16 2 C -0.14 -4.95 6.26 30.60 0.19 -4.76 16 3 C 0.15 5.98 5.71 86.38 0.49 6.48 16 4 N -0.60 -28.87 2.42 -702.00 -1.70 -30.56 16 5 C -0.27 -14.66 9.42 84.03 0.79 -13.86 16 6 H 0.05 2.65 7.90 -2.91 -0.02 2.63 16 7 C -0.02 -1.34 5.03 84.86 0.43 -0.91 16 8 N -0.91 -50.27 11.43 21.65 0.25 -50.02 16 9 Si 0.95 44.89 29.60 68.60 2.03 46.92 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 C 0.14 6.30 5.49 86.38 0.47 6.78 16 14 C 0.12 5.01 5.97 86.38 0.52 5.52 16 15 N -0.70 -23.94 5.51 -465.96 -2.57 -26.50 16 16 C 0.55 20.08 7.77 86.79 0.67 20.76 16 17 O -0.59 -27.60 16.34 -3.86 -0.06 -27.66 16 18 C -0.15 -4.21 5.87 -20.12 -0.12 -4.33 16 19 C -0.06 -0.99 9.54 22.58 0.22 -0.78 16 20 C -0.11 -1.22 10.02 22.19 0.22 -0.99 16 21 C -0.05 -0.65 7.54 22.58 0.17 -0.48 16 22 C -0.15 -3.39 5.23 -20.12 -0.11 -3.49 16 23 C 0.55 13.71 7.35 86.79 0.64 14.34 16 24 O -0.59 -20.53 16.47 -3.87 -0.06 -20.59 16 25 N -0.61 -9.30 3.27 -875.33 -2.87 -12.17 16 26 C 0.08 0.97 10.46 127.77 1.34 2.31 16 27 C 0.06 0.30 8.88 127.77 1.13 1.43 16 28 C -0.03 -0.95 9.17 22.79 0.21 -0.74 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.04 1.69 6.61 -2.39 -0.02 1.67 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.04 1.67 8.04 -2.39 -0.02 1.65 16 35 H 0.05 1.84 7.86 -2.39 -0.02 1.82 16 36 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 37 H 0.08 3.68 5.56 -2.38 -0.01 3.67 16 38 H 0.05 2.04 7.84 -2.39 -0.02 2.02 16 39 H 0.05 2.09 6.61 -2.38 -0.02 2.07 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.41 10.94 6.50 -92.71 -0.60 10.34 16 42 H 0.16 2.06 6.39 -2.91 -0.02 2.04 16 43 H 0.19 0.39 8.06 -2.91 -0.02 0.37 16 44 H 0.18 0.77 5.34 -2.91 -0.02 0.75 16 45 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.11 0.51 8.07 -2.39 -0.02 0.49 16 47 H 0.06 0.98 7.36 -2.39 -0.02 0.96 16 48 H 0.09 0.02 6.97 -2.39 -0.02 0.00 16 49 H 0.10 0.10 8.05 -2.39 -0.02 0.08 16 50 H 0.08 0.47 5.73 -2.38 -0.01 0.45 16 51 H 0.11 3.86 7.64 -2.91 -0.02 3.84 16 Total: -1.00 -82.15 413.65 3.35 -78.81 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.34 Total: 17.64 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: 7.98 Total: 24.14 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -6.88 Total: -119.25 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -0.13 Total: -48.25 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -82.15 3.35 -78.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691196610.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.498 kcal (2) G-P(sol) polarization free energy of solvation -82.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds