Wall clock time and date at job start Wed Apr 1 2020 04:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47256 * 153.54315 * 3 2 1 5 5 C 1.34778 * 120.00058 * 270.00197 * 4 3 2 6 6 O 1.21273 * 119.99770 * 179.97438 * 5 4 3 7 7 C 1.50697 * 119.99918 * 359.97438 * 5 4 3 8 8 C 1.52999 * 109.47270 * 179.97438 * 7 5 4 9 9 C 1.52992 * 117.50153 * 243.62321 * 8 7 5 10 10 C 1.52995 * 60.00190 * 252.50897 * 9 8 7 11 11 C 1.46493 * 119.99811 * 89.99767 * 4 3 2 12 12 C 1.53116 * 109.52720 * 59.87687 * 11 4 3 13 13 C 1.53042 * 109.28235 * 182.49999 * 12 11 4 14 14 N 1.46850 * 109.57057 * 59.08410 * 13 12 11 15 15 C 1.46900 * 110.99836 * 174.19318 * 14 13 12 16 16 C 1.50697 * 109.47213 * 294.20890 * 15 14 13 17 17 O 1.21290 * 120.00242 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00068 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99894 * 180.02562 * 18 16 15 20 20 H 1.07992 * 120.00133 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99595 * 180.02562 * 19 18 16 22 22 N 1.31421 * 120.00303 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99982 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46953 * 59.99587 * 23 21 19 25 25 H 1.48495 * 109.47458 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46929 * 299.99912 * 23 21 19 27 27 C 1.46843 * 111.19708 * 298.29086 * 14 13 12 28 28 C 1.53030 * 109.52556 * 61.74574 * 27 14 13 29 29 H 4.40642 * 5.51373 * 180.02562 * 4 1 2 30 30 H 1.09001 * 109.47410 * 33.54134 * 3 2 1 31 31 H 1.09004 * 109.47173 * 273.54369 * 3 2 1 32 32 H 1.08998 * 109.47545 * 300.00776 * 7 5 4 33 33 H 1.09008 * 109.47188 * 60.00003 * 7 5 4 34 34 H 1.08998 * 115.54251 * 29.33385 * 8 7 5 35 35 H 1.09004 * 117.50266 * 0.02562 * 9 8 7 36 36 H 1.09007 * 117.49871 * 145.01776 * 9 8 7 37 37 H 1.08998 * 117.50503 * 252.51040 * 10 9 8 38 38 H 1.09003 * 117.49594 * 107.48552 * 10 9 8 39 39 H 1.08999 * 109.52113 * 180.02562 * 11 4 3 40 40 H 1.09001 * 109.50439 * 302.38436 * 12 11 4 41 41 H 1.09008 * 109.50072 * 62.49347 * 12 11 4 42 42 H 1.09000 * 109.41024 * 299.07317 * 13 12 11 43 43 H 1.08998 * 109.45685 * 179.12477 * 13 12 11 44 44 H 1.09004 * 109.47152 * 54.21091 * 15 14 13 45 45 H 1.08997 * 109.46929 * 174.21007 * 15 14 13 46 46 H 0.97004 * 119.99663 * 0.02562 * 18 16 15 47 47 H 0.96997 * 119.99872 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.46549 * 301.72704 * 27 14 13 49 49 H 1.09004 * 109.45325 * 181.75118 * 27 14 13 50 50 H 1.09000 * 109.50777 * 180.87745 * 28 27 14 51 51 H 1.09007 * 109.50693 * 60.76089 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2375 -0.6154 5 6 3.3584 1.2864 -1.9434 6 8 3.7618 2.3104 -2.4528 7 6 3.1083 0.0687 -2.7952 8 6 3.4388 0.3901 -4.2541 9 6 2.2925 0.3386 -5.2661 10 6 3.3617 -0.7558 -5.2650 11 6 3.3774 2.4210 0.2128 12 6 4.4306 2.0944 1.2752 13 6 4.6352 3.3147 2.1759 14 7 3.3625 3.6734 2.8148 15 6 3.5502 4.7544 3.7916 16 6 4.4027 4.2592 4.9313 17 8 4.8139 3.1181 4.9298 18 7 4.7091 5.0846 5.9518 19 6 5.4851 4.6341 6.9885 20 1 5.8512 3.6181 6.9871 21 6 5.8004 5.4849 8.0408 22 7 5.3553 6.7214 8.0422 23 14 6.8583 4.8715 9.4529 24 1 8.1803 4.4415 8.9305 25 1 7.0484 5.9644 10.4401 26 1 6.1878 3.7210 10.1103 27 6 2.3506 4.0374 1.8149 28 6 2.0766 2.8383 0.9045 29 1 -1.0501 -0.0003 0.0003 30 1 3.0098 -0.8557 -0.5678 31 1 3.0094 -0.0627 1.0257 32 1 3.7391 -0.7511 -2.4515 33 1 2.0605 -0.2213 -2.7159 34 1 4.2112 1.1441 -4.4059 35 1 1.3027 0.0761 -4.8925 36 1 2.3105 1.0589 -6.0840 37 1 4.0831 -0.7555 -6.0821 38 1 3.0754 -1.7387 -4.8906 39 1 3.7339 3.2377 -0.4149 40 1 4.0909 1.2516 1.8772 41 1 5.3716 1.8385 0.7881 42 1 4.9891 4.1528 1.5755 43 1 5.3732 3.0801 2.9430 44 1 4.0432 5.5985 3.3092 45 1 2.5799 5.0707 4.1743 46 1 4.3805 5.9973 5.9528 47 1 5.5758 7.3154 8.7766 48 1 2.7152 4.8722 1.2162 49 1 1.4293 4.3278 2.3200 50 1 1.3369 3.1136 0.1527 51 1 1.6987 2.0075 1.5005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699775112.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:42 Heat of formation + Delta-G solvation = 17.484139 kcal Electronic energy + Delta-G solvation = -30527.463773 eV Core-core repulsion = 26429.375162 eV Total energy + Delta-G solvation = -4098.088611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.63570 -39.04645 -37.88915 -37.15660 -36.11706 -33.95084 -33.30601 -32.10783 -31.20622 -30.69524 -29.67943 -27.69928 -26.82747 -24.56701 -23.09017 -22.90915 -22.70458 -21.16134 -19.87515 -19.72929 -19.17354 -18.27388 -17.84195 -17.31491 -16.80809 -16.15109 -15.83765 -15.57795 -15.05006 -14.91863 -14.58070 -14.48461 -14.14548 -13.97765 -13.83981 -13.80080 -13.64148 -13.34208 -13.22730 -13.01954 -12.68784 -12.29970 -11.89156 -11.85220 -11.74961 -11.65861 -11.48343 -11.26600 -11.13294 -11.02882 -10.76854 -10.64402 -10.60344 -10.45838 -10.43830 -10.39928 -10.35457 -10.20360 -9.85362 -9.45622 -8.97085 -8.41827 -7.96352 -7.81821 -6.40461 -3.81271 2.16566 2.42635 2.55457 3.03698 3.20521 3.26284 3.30420 3.47592 3.91688 4.00791 4.07305 4.21709 4.25540 4.33821 4.56838 4.68325 4.79667 4.80592 4.90666 5.04771 5.09505 5.10649 5.13013 5.17019 5.26607 5.29034 5.32145 5.35652 5.47973 5.55299 5.56288 5.64432 5.69580 5.71469 5.76699 5.83257 5.87912 5.96953 6.00997 6.04596 6.15563 6.25687 6.32023 6.40869 6.51320 7.11825 7.31873 7.33279 7.44508 7.56042 7.94790 8.07542 8.63211 9.19190 9.55986 10.07779 10.77187 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023136 B = 0.001919 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.945141 B =14583.729636 C =14761.772740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.207 4.207 3 C 0.213 3.787 4 N -0.604 5.604 5 C 0.520 3.480 6 O -0.535 6.535 7 C -0.111 4.111 8 C -0.141 4.141 9 C -0.178 4.178 10 C -0.180 4.180 11 C 0.137 3.863 12 C -0.119 4.119 13 C 0.056 3.944 14 N -0.515 5.515 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.058 3.942 28 C -0.118 4.118 29 H 0.216 0.784 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.024 0.976 43 H 0.108 0.892 44 H 0.047 0.953 45 H 0.088 0.912 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.031 0.969 49 H 0.076 0.924 50 H 0.064 0.936 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.808 -12.209 -22.032 26.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.208 4.208 3 C 0.090 3.910 4 N -0.335 5.335 5 C 0.309 3.691 6 O -0.411 6.411 7 C -0.150 4.150 8 C -0.160 4.160 9 C -0.215 4.215 10 C -0.217 4.217 11 C 0.034 3.966 12 C -0.157 4.157 13 C -0.072 4.072 14 N -0.240 5.240 15 C -0.085 4.085 16 C 0.230 3.770 17 O -0.462 6.462 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.071 4.071 28 C -0.157 4.157 29 H 0.233 0.767 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.136 0.864 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.126 0.874 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.049 0.951 49 H 0.095 0.905 50 H 0.082 0.918 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.412 -12.671 -21.918 26.678 hybrid contribution 0.158 1.064 0.447 1.165 sum -8.254 -11.607 -21.471 25.765 Atomic orbital electron populations 1.24959 0.95930 0.98974 1.00223 1.23491 0.94849 1.01445 1.01028 1.18468 0.83858 0.87229 1.01421 1.48068 1.65414 1.12843 1.07197 1.20616 0.76631 0.90062 0.81816 1.90684 1.45483 1.32873 1.72042 1.21286 1.03576 0.96642 0.93545 1.22068 1.02476 1.01868 0.89550 1.23025 0.94338 1.02030 1.02145 1.22994 1.02576 0.94198 1.01913 1.21305 0.95849 0.87558 0.91858 1.21903 0.98099 0.99735 0.96012 1.22207 0.92431 0.95344 0.97258 1.61529 1.08764 1.38961 1.14735 1.21832 1.00709 0.92303 0.93659 1.19739 0.85649 0.86952 0.84686 1.90472 1.57418 1.18961 1.79363 1.41870 1.46026 1.13380 1.18819 1.19639 1.26282 0.99150 0.97749 0.87974 1.25260 0.98368 0.95203 0.99134 1.69608 1.45780 1.05468 1.33484 0.85923 0.80079 0.78058 0.80177 1.19946 1.21013 1.19917 1.22057 0.96289 0.95709 0.93058 1.21891 0.96662 0.99084 0.98038 0.76672 0.88055 0.87067 0.88368 0.88770 0.86357 0.88913 0.88751 0.88639 0.88768 0.88295 0.90523 0.91375 0.95820 0.87386 0.93469 0.89357 0.77497 0.91851 0.95073 0.90515 0.91758 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 19.25 29.55 0.57 -0.92 16 2 C -0.21 -1.85 11.82 -37.12 -0.44 -2.29 16 3 C 0.21 1.74 5.14 -6.83 -0.04 1.70 16 4 N -0.60 -6.32 2.38 -169.28 -0.40 -6.72 16 5 C 0.52 5.89 7.67 -10.99 -0.08 5.80 16 6 O -0.53 -8.05 14.89 5.56 0.08 -7.97 16 7 C -0.11 -0.87 4.53 -27.88 -0.13 -1.00 16 8 C -0.14 -1.20 5.41 -90.63 -0.49 -1.69 16 9 C -0.18 -1.32 10.18 -26.74 -0.27 -1.59 16 10 C -0.18 -1.16 10.25 -26.74 -0.27 -1.44 16 11 C 0.14 1.68 2.59 -67.81 -0.18 1.51 16 12 C -0.12 -1.58 5.40 -26.65 -0.14 -1.72 16 13 C 0.06 0.90 5.10 -3.83 -0.02 0.88 16 14 N -0.52 -8.51 4.40 -236.11 -1.04 -9.55 16 15 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 16 C 0.44 10.36 7.46 -10.99 -0.08 10.27 16 17 O -0.58 -15.19 13.90 5.55 0.08 -15.11 16 18 N -0.56 -14.21 5.29 -10.97 -0.06 -14.27 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 20 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 21 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 22 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 23 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.06 0.77 5.46 -3.84 -0.02 0.75 16 28 C -0.12 -1.43 4.88 -26.65 -0.13 -1.56 16 29 H 0.22 1.11 7.80 -54.08 -0.42 0.69 16 30 H 0.10 0.55 6.44 -51.93 -0.33 0.22 16 31 H 0.11 0.93 6.38 -51.93 -0.33 0.59 16 32 H 0.10 0.57 7.40 -51.93 -0.38 0.19 16 33 H 0.09 0.66 7.69 -51.92 -0.40 0.26 16 34 H 0.12 1.23 7.30 -51.93 -0.38 0.85 16 35 H 0.09 0.62 8.03 -51.93 -0.42 0.21 16 36 H 0.09 0.68 8.14 -51.92 -0.42 0.25 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 1.40 6.90 -51.93 -0.36 1.05 16 40 H 0.08 1.03 6.57 -51.93 -0.34 0.69 16 41 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.11 2.12 5.78 -51.93 -0.30 1.82 16 44 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 45 H 0.09 1.43 7.99 -51.93 -0.41 1.02 16 46 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.95 8.02 -51.93 -0.42 0.53 16 50 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.08 0.97 6.76 -51.92 -0.35 0.62 16 LS Contribution 412.10 15.07 6.21 6.21 Total: -1.00 -32.82 412.10 -9.48 -42.30 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -8.06 Total: 11.31 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.99 Total: 1.60 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.77 Total: -54.33 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: 0.16 Total: -23.08 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.82 -9.48 -42.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699775112.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.785 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds