Wall clock time and date at job start Wed Apr 1 2020 04:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47256 * 153.54315 * 3 2 1 5 5 C 1.34778 * 120.00058 * 270.00197 * 4 3 2 6 6 O 1.21273 * 119.99770 * 179.97438 * 5 4 3 7 7 C 1.50697 * 119.99918 * 359.97438 * 5 4 3 8 8 C 1.52999 * 109.47270 * 179.97438 * 7 5 4 9 9 C 1.52992 * 117.50153 * 243.62321 * 8 7 5 10 10 C 1.52995 * 60.00190 * 252.50897 * 9 8 7 11 11 C 1.46493 * 119.99811 * 89.99767 * 4 3 2 12 12 C 1.53116 * 109.52720 * 59.87687 * 11 4 3 13 13 C 1.53042 * 109.28235 * 182.49999 * 12 11 4 14 14 N 1.46850 * 109.57057 * 59.08410 * 13 12 11 15 15 C 1.46900 * 110.99836 * 174.19318 * 14 13 12 16 16 C 1.50697 * 109.47213 * 294.20890 * 15 14 13 17 17 O 1.21290 * 120.00242 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00068 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99894 * 180.02562 * 18 16 15 20 20 H 1.07992 * 120.00133 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99595 * 180.02562 * 19 18 16 22 22 N 1.31421 * 120.00303 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99982 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46953 * 59.99587 * 23 21 19 25 25 H 1.48495 * 109.47458 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46929 * 299.99912 * 23 21 19 27 27 C 1.46843 * 111.19708 * 298.29086 * 14 13 12 28 28 C 1.53030 * 109.52556 * 61.74574 * 27 14 13 29 29 H 4.40642 * 5.51373 * 180.02562 * 4 1 2 30 30 H 1.09001 * 109.47410 * 33.54134 * 3 2 1 31 31 H 1.09004 * 109.47173 * 273.54369 * 3 2 1 32 32 H 1.08998 * 109.47545 * 300.00776 * 7 5 4 33 33 H 1.09008 * 109.47188 * 60.00003 * 7 5 4 34 34 H 1.08998 * 115.54251 * 29.33385 * 8 7 5 35 35 H 1.09004 * 117.50266 * 0.02562 * 9 8 7 36 36 H 1.09007 * 117.49871 * 145.01776 * 9 8 7 37 37 H 1.08998 * 117.50503 * 252.51040 * 10 9 8 38 38 H 1.09003 * 117.49594 * 107.48552 * 10 9 8 39 39 H 1.08999 * 109.52113 * 180.02562 * 11 4 3 40 40 H 1.09001 * 109.50439 * 302.38436 * 12 11 4 41 41 H 1.09008 * 109.50072 * 62.49347 * 12 11 4 42 42 H 1.09000 * 109.41024 * 299.07317 * 13 12 11 43 43 H 1.08998 * 109.45685 * 179.12477 * 13 12 11 44 44 H 1.09004 * 109.47152 * 54.21091 * 15 14 13 45 45 H 1.08997 * 109.46929 * 174.21007 * 15 14 13 46 46 H 0.97004 * 119.99663 * 0.02562 * 18 16 15 47 47 H 0.96997 * 119.99872 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.46549 * 301.72704 * 27 14 13 49 49 H 1.09004 * 109.45325 * 181.75118 * 27 14 13 50 50 H 1.09000 * 109.50777 * 180.87745 * 28 27 14 51 51 H 1.09007 * 109.50693 * 60.76089 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2375 -0.6154 5 6 3.3584 1.2864 -1.9434 6 8 3.7618 2.3104 -2.4528 7 6 3.1083 0.0687 -2.7952 8 6 3.4388 0.3901 -4.2541 9 6 2.2925 0.3386 -5.2661 10 6 3.3617 -0.7558 -5.2650 11 6 3.3774 2.4210 0.2128 12 6 4.4306 2.0944 1.2752 13 6 4.6352 3.3147 2.1759 14 7 3.3625 3.6734 2.8148 15 6 3.5502 4.7544 3.7916 16 6 4.4027 4.2592 4.9313 17 8 4.8139 3.1181 4.9298 18 7 4.7091 5.0846 5.9518 19 6 5.4851 4.6341 6.9885 20 1 5.8512 3.6181 6.9871 21 6 5.8004 5.4849 8.0408 22 7 5.3553 6.7214 8.0422 23 14 6.8583 4.8715 9.4529 24 1 8.1803 4.4415 8.9305 25 1 7.0484 5.9644 10.4401 26 1 6.1878 3.7210 10.1103 27 6 2.3506 4.0374 1.8149 28 6 2.0766 2.8383 0.9045 29 1 -1.0501 -0.0003 0.0003 30 1 3.0098 -0.8557 -0.5678 31 1 3.0094 -0.0627 1.0257 32 1 3.7391 -0.7511 -2.4515 33 1 2.0605 -0.2213 -2.7159 34 1 4.2112 1.1441 -4.4059 35 1 1.3027 0.0761 -4.8925 36 1 2.3105 1.0589 -6.0840 37 1 4.0831 -0.7555 -6.0821 38 1 3.0754 -1.7387 -4.8906 39 1 3.7339 3.2377 -0.4149 40 1 4.0909 1.2516 1.8772 41 1 5.3716 1.8385 0.7881 42 1 4.9891 4.1528 1.5755 43 1 5.3732 3.0801 2.9430 44 1 4.0432 5.5985 3.3092 45 1 2.5799 5.0707 4.1743 46 1 4.3805 5.9973 5.9528 47 1 5.5758 7.3154 8.7766 48 1 2.7152 4.8722 1.2162 49 1 1.4293 4.3278 2.3200 50 1 1.3369 3.1136 0.1527 51 1 1.6987 2.0075 1.5005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699775112.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:40 Heat of formation + Delta-G solvation = -3.061499 kcal Electronic energy + Delta-G solvation = -30528.354698 eV Core-core repulsion = 26429.375162 eV Total energy + Delta-G solvation = -4098.979537 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.55952 -40.48159 -39.22378 -37.97040 -37.10890 -35.89616 -34.25496 -33.28905 -32.95463 -31.84302 -30.48015 -28.76937 -27.96768 -26.32078 -24.28065 -24.07368 -23.22532 -21.94390 -21.03043 -20.79873 -20.57565 -19.85578 -18.95613 -18.14973 -17.82468 -17.53968 -16.83437 -16.71911 -16.45024 -16.29527 -15.95401 -15.54600 -15.38988 -15.11175 -15.06277 -14.79655 -14.58735 -14.55465 -14.19225 -14.07693 -13.81737 -13.49372 -13.44180 -13.18118 -12.97853 -12.77942 -12.48615 -12.41140 -12.36901 -12.30169 -12.24273 -12.11678 -11.79146 -11.63884 -11.41450 -11.33702 -11.28953 -11.09818 -10.98440 -10.66727 -10.25238 -9.99052 -9.86682 -9.22054 -8.44607 -5.93071 1.40546 1.42148 1.42503 1.53050 1.59397 1.94358 2.07435 2.29113 2.31980 2.74310 2.91524 3.22130 3.38512 3.46689 3.53916 3.74453 3.77003 3.86543 3.99915 4.03807 4.14567 4.17042 4.21115 4.27286 4.35719 4.40839 4.46332 4.52117 4.54270 4.56740 4.61076 4.63002 4.70744 4.77377 4.80299 4.89037 4.93525 5.04272 5.07024 5.10536 5.13166 5.26807 5.28502 5.34654 5.42393 5.46643 5.88970 6.08110 6.21346 6.31330 6.62662 6.72629 7.09697 7.14797 7.58706 8.14267 8.72556 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023136 B = 0.001919 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.945141 B =14583.729636 C =14761.772740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.233 4.233 3 C 0.210 3.790 4 N -0.600 5.600 5 C 0.515 3.485 6 O -0.580 6.580 7 C -0.100 4.100 8 C -0.161 4.161 9 C -0.184 4.184 10 C -0.162 4.162 11 C 0.144 3.856 12 C -0.108 4.108 13 C 0.058 3.942 14 N -0.528 5.528 15 C 0.057 3.943 16 C 0.443 3.557 17 O -0.611 6.611 18 N -0.575 5.575 19 C -0.331 4.331 20 H 0.080 0.920 21 C -0.015 4.015 22 N -0.922 5.922 23 Si 0.993 3.007 24 H -0.272 1.272 25 H -0.272 1.272 26 H -0.271 1.271 27 C 0.058 3.942 28 C -0.106 4.106 29 H 0.240 0.760 30 H 0.132 0.868 31 H 0.108 0.892 32 H 0.124 0.876 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.026 0.974 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.111 0.889 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.037 0.963 49 H 0.092 0.908 50 H 0.072 0.928 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.176 -13.534 -22.722 28.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.234 4.234 3 C 0.088 3.912 4 N -0.331 5.331 5 C 0.306 3.694 6 O -0.459 6.459 7 C -0.140 4.140 8 C -0.180 4.180 9 C -0.221 4.221 10 C -0.198 4.198 11 C 0.040 3.960 12 C -0.146 4.146 13 C -0.070 4.070 14 N -0.253 5.253 15 C -0.074 4.074 16 C 0.230 3.770 17 O -0.497 6.497 18 N -0.213 5.213 19 C -0.460 4.460 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.563 5.563 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.197 1.197 27 C -0.070 4.070 28 C -0.145 4.145 29 H 0.256 0.744 30 H 0.150 0.850 31 H 0.126 0.874 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.131 0.869 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.044 0.956 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.129 0.871 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.055 0.945 49 H 0.110 0.890 50 H 0.091 0.909 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.807 -14.007 -22.616 28.352 hybrid contribution 0.549 1.462 0.604 1.674 sum -9.258 -12.545 -22.012 26.974 Atomic orbital electron populations 1.25658 0.96763 0.97863 0.99250 1.23698 0.95310 1.02461 1.01973 1.18679 0.83917 0.86942 1.01622 1.48072 1.64991 1.13026 1.06964 1.21280 0.75558 0.90550 0.82024 1.90666 1.47603 1.34796 1.72882 1.21301 1.04937 0.95414 0.92310 1.21999 1.02662 1.02808 0.90524 1.23109 0.94724 1.02588 1.01671 1.23080 1.01670 0.94286 1.00800 1.21038 0.95570 0.88029 0.91324 1.21773 0.98812 0.98278 0.95764 1.22068 0.91758 0.96688 0.96480 1.61516 1.09330 1.38784 1.15671 1.21723 1.00672 0.92883 0.92159 1.20706 0.84912 0.86250 0.85113 1.90451 1.58500 1.20522 1.80178 1.41940 1.46440 1.13775 1.19125 1.19620 1.28111 0.98746 0.99542 0.90184 1.26037 0.99122 0.95278 1.00976 1.69675 1.46246 1.06095 1.34249 0.84994 0.78282 0.77848 0.77243 1.19757 1.19638 1.19666 1.22146 0.95750 0.96452 0.92624 1.21782 0.96494 0.98462 0.97769 0.74385 0.85030 0.87416 0.85856 0.87227 0.89085 0.87997 0.89188 0.88233 0.86917 0.90236 0.90623 0.91005 0.95572 0.91208 0.91887 0.87053 0.77119 0.91397 0.94479 0.89015 0.90934 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 19.25 74.32 1.43 -0.99 16 2 C -0.23 -3.64 11.82 31.13 0.37 -3.27 16 3 C 0.21 3.02 5.14 84.57 0.43 3.45 16 4 N -0.60 -11.90 2.38 -807.87 -1.92 -13.82 16 5 C 0.52 11.28 7.67 87.66 0.67 11.95 16 6 O -0.58 -17.82 14.89 -3.01 -0.04 -17.86 16 7 C -0.10 -1.38 4.53 29.85 0.14 -1.24 16 8 C -0.16 -2.58 5.41 -10.80 -0.06 -2.63 16 9 C -0.18 -2.46 10.18 30.59 0.31 -2.15 16 10 C -0.16 -1.74 10.25 30.59 0.31 -1.42 16 11 C 0.14 3.47 2.59 45.07 0.12 3.59 16 12 C -0.11 -2.87 5.40 30.65 0.17 -2.70 16 13 C 0.06 1.93 5.10 86.33 0.44 2.37 16 14 N -0.53 -17.16 4.40 -900.93 -3.96 -21.12 16 15 C 0.06 1.99 5.45 85.56 0.47 2.46 16 16 C 0.44 21.04 7.46 87.66 0.65 21.69 16 17 O -0.61 -33.13 13.90 -3.06 -0.04 -33.17 16 18 N -0.58 -29.60 5.29 -306.99 -1.62 -31.22 16 19 C -0.33 -18.76 9.68 84.04 0.81 -17.94 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.78 5.50 84.92 0.47 -0.32 16 22 N -0.92 -50.01 13.05 21.66 0.28 -49.73 16 23 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 C 0.06 1.46 5.46 86.32 0.47 1.93 16 28 C -0.11 -2.43 4.88 30.65 0.15 -2.28 16 29 H 0.24 1.73 7.80 -4.41 -0.03 1.69 16 30 H 0.13 1.05 6.44 -2.39 -0.02 1.03 16 31 H 0.11 1.64 6.38 -2.38 -0.02 1.63 16 32 H 0.12 1.05 7.40 -2.39 -0.02 1.03 16 33 H 0.11 1.20 7.69 -2.38 -0.02 1.18 16 34 H 0.09 1.97 7.30 -2.39 -0.02 1.95 16 35 H 0.10 1.16 8.03 -2.38 -0.02 1.14 16 36 H 0.09 1.24 8.14 -2.38 -0.02 1.23 16 37 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 2.28 6.90 -2.39 -0.02 2.26 16 40 H 0.08 2.03 6.57 -2.39 -0.02 2.02 16 41 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 2.86 5.78 -2.39 -0.01 2.85 16 44 H 0.06 2.04 8.12 -2.38 -0.02 2.02 16 45 H 0.11 3.42 7.99 -2.39 -0.02 3.40 16 46 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 47 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 48 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.09 2.04 8.02 -2.38 -0.02 2.02 16 50 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.07 1.77 6.76 -2.38 -0.02 1.76 16 Total: -1.00 -73.08 412.10 2.27 -70.81 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: 0.20 Total: 38.55 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 7.35 Total: 12.49 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -7.22 Total: -115.89 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -0.09 Total: -51.04 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -73.08 2.27 -70.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699775112.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.748 kcal (2) G-P(sol) polarization free energy of solvation -73.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds