Wall clock time and date at job start Wed Apr 1 2020 04:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.47060 * 2 1 4 4 N 1.46492 * 109.46977 * 180.02562 * 3 2 1 5 5 C 1.34780 * 120.00069 * 94.95789 * 4 3 2 6 6 O 1.21615 * 120.00183 * 185.66163 * 5 4 3 7 7 C 1.47284 * 119.99624 * 5.66236 * 5 4 3 8 8 C 1.37987 * 120.88368 * 54.98222 * 7 5 4 9 9 N 1.34353 * 120.36912 * 180.02562 * 8 7 5 10 10 H 0.97004 * 118.79848 * 179.97438 * 9 8 7 11 11 C 1.35581 * 122.39396 * 0.02562 * 9 8 7 12 12 C 1.50699 * 119.10216 * 179.97438 * 11 9 8 13 13 C 1.34875 * 121.79737 * 359.71942 * 11 9 8 14 14 C 1.41665 * 119.33626 * 0.53213 * 13 11 9 15 15 O 1.22083 * 121.06563 * 179.76502 * 14 13 11 16 16 C 1.46505 * 120.00035 * 274.95421 * 4 3 2 17 17 C 1.53043 * 109.45912 * 240.06557 * 16 4 3 18 18 C 1.53188 * 109.30983 * 178.61452 * 17 16 4 19 19 N 1.46926 * 108.77500 * 54.63973 * 18 17 16 20 20 C 1.36944 * 120.62847 * 126.41277 * 19 18 17 21 21 H 1.07997 * 119.99725 * 324.78219 * 20 19 18 22 22 C 1.38810 * 119.99976 * 144.78309 * 20 19 18 23 23 N 1.31625 * 119.99849 * 4.60044 * 22 20 19 24 24 Si 1.86803 * 120.00213 * 184.60196 * 22 20 19 25 25 H 1.48498 * 109.46662 * 59.99719 * 24 22 20 26 26 H 1.48496 * 109.47294 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.46697 * 299.99981 * 24 22 20 28 28 C 1.46920 * 118.73839 * 306.38697 * 19 18 17 29 29 C 1.53044 * 109.45868 * 120.00627 * 16 4 3 30 30 H 1.08996 * 109.46883 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47174 * 299.99597 * 1 2 3 32 32 H 1.09004 * 109.47491 * 59.99805 * 1 2 3 33 33 H 1.08999 * 109.47174 * 240.00403 * 2 1 3 34 34 H 1.08995 * 109.47634 * 120.00383 * 2 1 3 35 35 H 1.08999 * 109.46798 * 60.00173 * 3 2 1 36 36 H 1.08995 * 109.47210 * 300.00643 * 3 2 1 37 37 H 1.07994 * 119.81610 * 359.97438 * 8 7 5 38 38 H 1.09000 * 109.46622 * 89.99796 * 12 11 9 39 39 H 1.08999 * 109.47393 * 209.99632 * 12 11 9 40 40 H 1.08999 * 109.46817 * 329.99800 * 12 11 9 41 41 H 1.07993 * 120.32797 * 180.27542 * 13 11 9 42 42 H 1.08997 * 109.46106 * 0.03025 * 16 4 3 43 43 H 1.08996 * 109.50298 * 298.56920 * 17 16 4 44 44 H 1.08999 * 109.49085 * 58.66910 * 17 16 4 45 45 H 1.09005 * 109.59203 * 294.85098 * 18 17 16 46 46 H 1.09003 * 109.70308 * 174.49545 * 18 17 16 47 47 H 0.97006 * 119.99756 * 180.02562 * 23 22 20 48 48 H 1.09001 * 109.59035 * 293.81926 * 28 19 18 49 49 H 1.09009 * 109.70248 * 173.46647 * 28 19 18 50 50 H 1.09003 * 109.49532 * 301.33618 * 29 16 4 51 51 H 1.08994 * 109.49909 * 61.39624 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1784 1.5436 -1.1637 6 8 5.3900 1.4403 -1.1758 7 6 3.4467 1.7792 -2.4201 8 6 2.5909 2.8537 -2.5506 9 7 1.9283 3.0585 -3.7013 10 1 1.3322 3.8208 -3.7680 11 6 2.0618 2.2378 -4.7723 12 6 1.2822 2.5372 -6.0267 13 6 2.8771 1.1637 -4.7474 14 6 3.6079 0.8743 -3.5687 15 8 4.3516 -0.0921 -3.5100 16 6 4.2380 1.3328 1.2631 17 6 5.1166 2.5716 1.4521 18 6 5.8550 2.4695 2.7903 19 7 6.5891 1.1974 2.8296 20 6 7.9309 1.1743 3.1026 21 1 8.5674 1.9724 2.7503 22 6 8.4727 0.1250 3.8321 23 7 7.7152 -0.8924 4.1837 24 14 10.2770 0.1567 4.3150 25 1 10.5438 1.3526 5.1540 26 1 10.6055 -1.0709 5.0831 27 1 11.1159 0.2136 3.0910 28 6 5.8562 -0.0494 2.5708 29 6 5.1178 0.0809 1.2350 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9564 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 2.4524 3.5334 -1.7230 38 1 1.8714 3.1864 -6.6744 39 1 1.0622 1.6060 -6.5488 40 1 0.3491 3.0358 -5.7643 41 1 2.9688 0.5284 -5.6158 42 1 3.5299 1.2606 2.0886 43 1 5.8414 2.6309 0.6402 44 1 4.4917 3.4646 1.4486 45 1 5.1352 2.5013 3.6083 46 1 6.5556 3.2988 2.8877 47 1 8.0938 -1.6255 4.6938 48 1 5.1365 -0.2230 3.3709 49 1 6.5561 -0.8837 2.5216 50 1 4.4939 -0.7988 1.0769 51 1 5.8422 0.1634 0.4248 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713102021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:04 Heat of formation + Delta-G solvation = -13.864639 kcal Electronic energy + Delta-G solvation = -32168.839277 eV Core-core repulsion = 28069.391282 eV Total energy + Delta-G solvation = -4099.447996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.27839 -39.65689 -37.81253 -36.72325 -35.85546 -33.69796 -33.22809 -32.04351 -31.38378 -29.91604 -29.37382 -28.29053 -26.19728 -25.07222 -24.02403 -22.69960 -22.12171 -21.99578 -21.56252 -20.16782 -19.22599 -17.95813 -17.62869 -16.80957 -16.51322 -16.03781 -15.88534 -15.29593 -14.79779 -14.65965 -14.54014 -14.32241 -13.82567 -13.72026 -13.57500 -13.45955 -13.32871 -13.23497 -13.05959 -12.92699 -12.80929 -12.59134 -12.44102 -12.30871 -12.14583 -11.77348 -11.42167 -11.29899 -10.93163 -10.81625 -10.72314 -10.63791 -10.23791 -9.98079 -9.86566 -9.71760 -9.59178 -9.55905 -9.38542 -8.97686 -8.34868 -8.22367 -8.07287 -6.39014 -5.62557 -3.14804 0.78430 1.07786 2.35989 2.97737 3.27161 3.49815 3.53403 3.55367 3.67645 3.90883 4.24333 4.38706 4.57251 4.61869 4.78998 4.81703 4.83081 4.92996 5.05368 5.20345 5.23247 5.30018 5.41188 5.46923 5.52817 5.56168 5.61791 5.63904 5.78335 5.83054 5.91127 6.01174 6.02700 6.11443 6.24903 6.30512 6.43313 6.49776 6.52707 6.56109 6.71081 6.80531 6.92235 7.04878 7.19375 7.29153 7.64879 7.84798 7.93529 8.02149 8.05539 8.64169 8.70532 9.40655 10.00080 10.59404 11.43081 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016361 B = 0.002892 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.022554 B = 9678.934666 C =10302.287245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.106 3.894 4 N -0.611 5.611 5 C 0.577 3.423 6 O -0.498 6.498 7 C -0.280 4.280 8 C 0.155 3.845 9 N -0.581 5.581 10 H 0.419 0.581 11 C 0.156 3.844 12 C -0.125 4.125 13 C -0.272 4.272 14 C 0.409 3.591 15 O -0.490 6.490 16 C 0.163 3.837 17 C -0.146 4.146 18 C 0.152 3.848 19 N -0.591 5.591 20 C -0.247 4.247 21 H 0.062 0.938 22 C 0.007 3.993 23 N -0.907 5.907 24 Si 0.903 3.097 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.171 3.829 29 C -0.156 4.156 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.171 0.829 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.151 0.849 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.043 0.957 45 H 0.014 0.986 46 H 0.054 0.946 47 H 0.253 0.747 48 H 0.010 0.990 49 H 0.102 0.898 50 H 0.042 0.958 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.659 10.987 -17.795 31.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C -0.017 4.017 4 N -0.344 5.344 5 C 0.363 3.637 6 O -0.372 6.372 7 C -0.291 4.291 8 C 0.025 3.975 9 N -0.188 5.188 10 H 0.255 0.745 11 C 0.049 3.951 12 C -0.182 4.182 13 C -0.297 4.297 14 C 0.295 3.705 15 O -0.372 6.372 16 C 0.062 3.938 17 C -0.186 4.186 18 C 0.025 3.975 19 N -0.314 5.314 20 C -0.377 4.377 21 H 0.079 0.921 22 C -0.191 4.191 23 N -0.551 5.551 24 Si 0.733 3.267 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.209 1.209 28 C 0.045 3.955 29 C -0.196 4.196 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.188 0.812 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.168 0.832 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.062 0.938 45 H 0.032 0.968 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.028 0.972 49 H 0.120 0.880 50 H 0.060 0.940 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.492 10.224 -17.661 30.370 hybrid contribution 0.382 0.360 0.259 0.586 sum -22.110 10.584 -17.402 30.061 Atomic orbital electron populations 1.21682 0.95491 1.01880 1.01326 1.21966 0.95561 0.97467 1.03349 1.21733 0.80635 0.97134 1.02218 1.48272 1.05779 1.73466 1.06875 1.17464 0.86917 0.77293 0.82025 1.90832 1.13436 1.47309 1.85576 1.22623 1.05387 1.01547 0.99525 1.22025 0.90178 0.97050 0.88222 1.40647 1.40521 1.26907 1.10679 0.74506 1.20243 0.95777 0.90751 0.88363 1.21087 0.99248 1.04612 0.93243 1.22204 1.04191 1.01066 1.02229 1.18190 0.81719 0.84722 0.85848 1.90833 1.34737 1.27722 1.83859 1.21101 0.92972 0.97260 0.82507 1.22442 0.99143 0.95113 1.01923 1.20834 0.94066 0.90351 0.92260 1.43975 1.05566 1.00298 1.81576 1.19115 0.83692 1.08189 1.26742 0.92055 1.25293 0.98118 0.97968 0.97752 1.69889 1.34837 1.09093 1.41316 0.86351 0.85082 0.76827 0.78431 1.20974 1.21655 1.20934 1.20951 0.94221 0.91242 0.89058 1.22706 0.99159 0.94184 1.03580 0.92528 0.92608 0.93171 0.91745 0.91051 0.90647 0.91070 0.81222 0.89282 0.88802 0.90532 0.83177 0.90728 0.90416 0.93827 0.96768 0.92764 0.93619 0.97167 0.87982 0.93975 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.14 -1.65 6.26 -26.73 -0.17 -1.82 16 3 C 0.11 1.15 5.18 -4.04 -0.02 1.13 16 4 N -0.61 -9.59 2.42 -167.37 -0.41 -10.00 16 5 C 0.58 10.45 6.34 -12.58 -0.08 10.37 16 6 O -0.50 -11.76 13.28 5.26 0.07 -11.69 16 7 C -0.28 -3.91 5.07 -102.71 -0.52 -4.43 16 8 C 0.15 1.19 8.69 -16.54 -0.14 1.05 16 9 N -0.58 -2.50 5.16 -9.00 -0.05 -2.55 16 10 H 0.42 0.00 8.70 -40.82 -0.35 -0.35 16 11 C 0.16 0.90 6.79 -82.13 -0.56 0.34 16 12 C -0.12 -0.21 10.02 36.01 0.36 0.15 16 13 C -0.27 -2.81 9.57 -39.47 -0.38 -3.19 16 14 C 0.41 6.49 6.96 -34.68 -0.24 6.25 16 15 O -0.49 -10.49 17.47 4.84 0.08 -10.40 16 16 C 0.16 3.05 2.51 -67.88 -0.17 2.88 16 17 C -0.15 -2.86 5.27 -26.61 -0.14 -3.00 16 18 C 0.15 3.42 6.52 -3.71 -0.02 3.39 16 19 N -0.59 -16.06 3.00 -172.32 -0.52 -16.58 16 20 C -0.25 -7.30 9.56 -15.06 -0.14 -7.44 16 21 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 22 C 0.01 0.20 5.33 -17.43 -0.09 0.10 16 23 N -0.91 -27.55 10.59 55.49 0.59 -26.97 16 24 Si 0.90 22.98 29.56 -169.99 -5.02 17.96 16 25 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 28 C 0.17 4.50 5.27 -3.72 -0.02 4.48 16 29 C -0.16 -3.58 5.26 -26.61 -0.14 -3.72 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.70 8.03 -51.93 -0.42 0.28 16 36 H 0.07 0.58 4.44 -51.93 -0.23 0.35 16 37 H 0.17 0.84 7.56 -52.49 -0.40 0.44 16 38 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.09 0.14 8.06 -51.93 -0.42 -0.28 16 40 H 0.08 -0.03 8.12 -51.93 -0.42 -0.45 16 41 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.07 1.30 7.86 -51.93 -0.41 0.89 16 43 H 0.08 1.76 6.41 -51.93 -0.33 1.43 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 47 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.10 3.04 5.89 -51.92 -0.31 2.74 16 50 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 51 H 0.08 2.18 6.03 -51.93 -0.31 1.87 16 LS Contribution 401.94 15.07 6.06 6.06 Total: -1.00 -41.13 401.94 -9.51 -50.64 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -8.21 Total: -2.19 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -2.11 Total: 5.71 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.38 Total: -56.09 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: 0.15 Total: -22.09 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -41.13 -9.51 -50.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713102021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.778 kcal (2) G-P(sol) polarization free energy of solvation -41.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds