Wall clock time and date at job start Wed Apr 1 2020 04:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.47060 * 2 1 4 4 N 1.46492 * 109.46977 * 180.02562 * 3 2 1 5 5 C 1.34780 * 120.00069 * 94.95789 * 4 3 2 6 6 O 1.21615 * 120.00183 * 185.66163 * 5 4 3 7 7 C 1.47284 * 119.99624 * 5.66236 * 5 4 3 8 8 C 1.37987 * 120.88368 * 54.98222 * 7 5 4 9 9 N 1.34353 * 120.36912 * 180.02562 * 8 7 5 10 10 H 0.97004 * 118.79848 * 179.97438 * 9 8 7 11 11 C 1.35581 * 122.39396 * 0.02562 * 9 8 7 12 12 C 1.50699 * 119.10216 * 179.97438 * 11 9 8 13 13 C 1.34875 * 121.79737 * 359.71942 * 11 9 8 14 14 C 1.41665 * 119.33626 * 0.53213 * 13 11 9 15 15 O 1.22083 * 121.06563 * 179.76502 * 14 13 11 16 16 C 1.46505 * 120.00035 * 274.95421 * 4 3 2 17 17 C 1.53043 * 109.45912 * 240.06557 * 16 4 3 18 18 C 1.53188 * 109.30983 * 178.61452 * 17 16 4 19 19 N 1.46926 * 108.77500 * 54.63973 * 18 17 16 20 20 C 1.36944 * 120.62847 * 126.41277 * 19 18 17 21 21 H 1.07997 * 119.99725 * 324.78219 * 20 19 18 22 22 C 1.38810 * 119.99976 * 144.78309 * 20 19 18 23 23 N 1.31625 * 119.99849 * 4.60044 * 22 20 19 24 24 Si 1.86803 * 120.00213 * 184.60196 * 22 20 19 25 25 H 1.48498 * 109.46662 * 59.99719 * 24 22 20 26 26 H 1.48496 * 109.47294 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.46697 * 299.99981 * 24 22 20 28 28 C 1.46920 * 118.73839 * 306.38697 * 19 18 17 29 29 C 1.53044 * 109.45868 * 120.00627 * 16 4 3 30 30 H 1.08996 * 109.46883 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47174 * 299.99597 * 1 2 3 32 32 H 1.09004 * 109.47491 * 59.99805 * 1 2 3 33 33 H 1.08999 * 109.47174 * 240.00403 * 2 1 3 34 34 H 1.08995 * 109.47634 * 120.00383 * 2 1 3 35 35 H 1.08999 * 109.46798 * 60.00173 * 3 2 1 36 36 H 1.08995 * 109.47210 * 300.00643 * 3 2 1 37 37 H 1.07994 * 119.81610 * 359.97438 * 8 7 5 38 38 H 1.09000 * 109.46622 * 89.99796 * 12 11 9 39 39 H 1.08999 * 109.47393 * 209.99632 * 12 11 9 40 40 H 1.08999 * 109.46817 * 329.99800 * 12 11 9 41 41 H 1.07993 * 120.32797 * 180.27542 * 13 11 9 42 42 H 1.08997 * 109.46106 * 0.03025 * 16 4 3 43 43 H 1.08996 * 109.50298 * 298.56920 * 17 16 4 44 44 H 1.08999 * 109.49085 * 58.66910 * 17 16 4 45 45 H 1.09005 * 109.59203 * 294.85098 * 18 17 16 46 46 H 1.09003 * 109.70308 * 174.49545 * 18 17 16 47 47 H 0.97006 * 119.99756 * 180.02562 * 23 22 20 48 48 H 1.09001 * 109.59035 * 293.81926 * 28 19 18 49 49 H 1.09009 * 109.70248 * 173.46647 * 28 19 18 50 50 H 1.09003 * 109.49532 * 301.33618 * 29 16 4 51 51 H 1.08994 * 109.49909 * 61.39624 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1784 1.5436 -1.1637 6 8 5.3900 1.4403 -1.1758 7 6 3.4467 1.7792 -2.4201 8 6 2.5909 2.8537 -2.5506 9 7 1.9283 3.0585 -3.7013 10 1 1.3322 3.8208 -3.7680 11 6 2.0618 2.2378 -4.7723 12 6 1.2822 2.5372 -6.0267 13 6 2.8771 1.1637 -4.7474 14 6 3.6079 0.8743 -3.5687 15 8 4.3516 -0.0921 -3.5100 16 6 4.2380 1.3328 1.2631 17 6 5.1166 2.5716 1.4521 18 6 5.8550 2.4695 2.7903 19 7 6.5891 1.1974 2.8296 20 6 7.9309 1.1743 3.1026 21 1 8.5674 1.9724 2.7503 22 6 8.4727 0.1250 3.8321 23 7 7.7152 -0.8924 4.1837 24 14 10.2770 0.1567 4.3150 25 1 10.5438 1.3526 5.1540 26 1 10.6055 -1.0709 5.0831 27 1 11.1159 0.2136 3.0910 28 6 5.8562 -0.0494 2.5708 29 6 5.1178 0.0809 1.2350 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9564 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 2.4524 3.5334 -1.7230 38 1 1.8714 3.1864 -6.6744 39 1 1.0622 1.6060 -6.5488 40 1 0.3491 3.0358 -5.7643 41 1 2.9688 0.5284 -5.6158 42 1 3.5299 1.2606 2.0886 43 1 5.8414 2.6309 0.6402 44 1 4.4917 3.4646 1.4486 45 1 5.1352 2.5013 3.6083 46 1 6.5556 3.2988 2.8877 47 1 8.0938 -1.6255 4.6938 48 1 5.1365 -0.2230 3.3709 49 1 6.5561 -0.8837 2.5216 50 1 4.4939 -0.7988 1.0769 51 1 5.8422 0.1634 0.4248 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713102021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:03 Heat of formation + Delta-G solvation = -44.513060 kcal Electronic energy + Delta-G solvation = -32170.168293 eV Core-core repulsion = 28069.391282 eV Total energy + Delta-G solvation = -4100.777011 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.16833 -40.91360 -38.94497 -38.45978 -37.12625 -35.03655 -34.20274 -33.43685 -32.58984 -31.69042 -31.12949 -28.97285 -27.34971 -26.69666 -25.02755 -24.11835 -23.82064 -23.08330 -22.63173 -21.44723 -20.82494 -19.11454 -18.73409 -18.37840 -17.48848 -17.29258 -17.04776 -16.84021 -16.11576 -15.74548 -15.61691 -15.54156 -15.45145 -15.26115 -14.87055 -14.71723 -14.51713 -14.36551 -14.22588 -13.95955 -13.84291 -13.69300 -13.42563 -13.28088 -13.09136 -12.99883 -12.89939 -12.78462 -12.64017 -12.61637 -12.26373 -12.20404 -11.97230 -11.80862 -11.67986 -11.40321 -11.31357 -10.84044 -10.54815 -10.40681 -10.28272 -9.56300 -9.14885 -8.56414 -7.86800 -5.43255 -0.04712 0.32431 1.41949 1.46124 1.52355 1.65788 1.79652 2.13037 2.48431 2.67069 3.26333 3.39449 3.51563 3.66476 3.70733 3.94422 3.97046 4.00567 4.03833 4.16019 4.27905 4.36348 4.39123 4.45883 4.54034 4.57135 4.63864 4.70685 4.76604 4.80362 4.83385 4.85549 4.89096 4.94059 4.98925 5.09206 5.16850 5.21636 5.21870 5.24545 5.32275 5.42912 5.47146 5.57595 5.64197 5.70768 5.73260 5.84643 6.15121 6.45150 6.56355 7.06808 7.16118 7.35295 7.85251 8.38513 9.16397 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016361 B = 0.002892 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.022554 B = 9678.934666 C =10302.287245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.103 3.897 4 N -0.604 5.604 5 C 0.573 3.427 6 O -0.572 6.572 7 C -0.340 4.340 8 C 0.212 3.788 9 N -0.545 5.545 10 H 0.452 0.548 11 C 0.201 3.799 12 C -0.123 4.123 13 C -0.311 4.311 14 C 0.383 3.617 15 O -0.589 6.589 16 C 0.172 3.828 17 C -0.131 4.131 18 C 0.148 3.852 19 N -0.613 5.613 20 C -0.268 4.268 21 H 0.057 0.943 22 C -0.048 4.048 23 N -0.934 5.934 24 Si 0.972 3.028 25 H -0.268 1.268 26 H -0.288 1.288 27 H -0.284 1.284 28 C 0.183 3.817 29 C -0.142 4.142 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.046 0.954 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.219 0.781 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.150 0.850 42 H 0.100 0.900 43 H 0.041 0.959 44 H 0.092 0.908 45 H 0.033 0.967 46 H 0.054 0.946 47 H 0.251 0.749 48 H 0.006 0.994 49 H 0.057 0.943 50 H 0.039 0.961 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.637 15.779 -18.844 37.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C -0.018 4.018 4 N -0.336 5.336 5 C 0.362 3.638 6 O -0.451 6.451 7 C -0.350 4.350 8 C 0.078 3.922 9 N -0.152 5.152 10 H 0.295 0.705 11 C 0.091 3.909 12 C -0.180 4.180 13 C -0.334 4.334 14 C 0.278 3.722 15 O -0.480 6.480 16 C 0.069 3.931 17 C -0.170 4.170 18 C 0.022 3.978 19 N -0.337 5.337 20 C -0.398 4.398 21 H 0.075 0.925 22 C -0.243 4.243 23 N -0.579 5.579 24 Si 0.799 3.201 25 H -0.194 1.194 26 H -0.214 1.214 27 H -0.210 1.210 28 C 0.057 3.943 29 C -0.182 4.182 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.235 0.765 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.133 0.867 41 H 0.168 0.832 42 H 0.118 0.882 43 H 0.059 0.941 44 H 0.111 0.889 45 H 0.051 0.949 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.024 0.976 49 H 0.075 0.925 50 H 0.058 0.942 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -27.609 15.116 -18.745 36.635 hybrid contribution 1.739 -0.996 0.443 2.053 sum -25.870 14.120 -18.302 34.692 Atomic orbital electron populations 1.21626 0.92269 1.02286 1.03283 1.21940 0.98285 0.97587 1.00572 1.22129 0.77119 0.97162 1.05406 1.48221 1.07808 1.72446 1.05107 1.18152 0.86323 0.75672 0.83667 1.90791 1.16927 1.50621 1.86750 1.22104 1.10030 1.05252 0.97632 1.22447 0.85962 0.93925 0.89819 1.40917 1.38573 1.26714 1.09025 0.70509 1.20744 0.92564 0.87892 0.89713 1.21306 1.00259 1.05709 0.90738 1.22022 1.06521 1.04145 1.00702 1.19024 0.81135 0.83981 0.88034 1.90775 1.39703 1.31868 1.85624 1.20804 0.92977 0.94343 0.84955 1.22236 0.98818 0.97373 0.98614 1.21024 0.94305 0.88023 0.94409 1.44225 1.05395 1.01968 1.82071 1.19411 0.85247 1.08291 1.26868 0.92488 1.26087 1.02680 0.97567 0.97964 1.70094 1.36570 1.09455 1.41799 0.85289 0.79663 0.77209 0.77944 1.19380 1.21411 1.21012 1.20605 0.93184 0.90174 0.90382 1.22417 0.98789 0.97102 0.99896 0.93100 0.90758 0.90914 0.95090 0.93550 0.87256 0.87646 0.76511 0.87471 0.88384 0.86657 0.83206 0.88164 0.94051 0.88919 0.94894 0.92755 0.93996 0.97631 0.92455 0.94184 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.91 71.98 0.71 -1.09 16 2 C -0.14 -3.18 6.26 30.60 0.19 -2.99 16 3 C 0.10 1.89 5.18 86.38 0.45 2.33 16 4 N -0.60 -18.71 2.42 -801.68 -1.94 -20.65 16 5 C 0.57 21.71 6.34 86.62 0.55 22.26 16 6 O -0.57 -29.71 13.28 -4.08 -0.05 -29.76 16 7 C -0.34 -9.46 5.07 -18.63 -0.09 -9.56 16 8 C 0.21 2.22 8.69 84.25 0.73 2.95 16 9 N -0.54 -1.12 5.16 -182.38 -0.94 -2.06 16 10 H 0.45 -4.09 8.70 -92.70 -0.81 -4.90 16 11 C 0.20 1.41 6.79 41.21 0.28 1.69 16 12 C -0.12 0.35 10.02 71.24 0.71 1.06 16 13 C -0.31 -6.36 9.57 22.34 0.21 -6.15 16 14 C 0.38 13.19 6.96 25.45 0.18 13.36 16 15 O -0.59 -28.95 17.47 -5.59 -0.10 -29.05 16 16 C 0.17 6.47 2.51 45.02 0.11 6.59 16 17 C -0.13 -5.05 5.27 30.67 0.16 -4.89 16 18 C 0.15 6.66 6.52 86.36 0.56 7.22 16 19 N -0.61 -34.79 3.00 -699.10 -2.10 -36.89 16 20 C -0.27 -16.52 9.56 84.03 0.80 -15.71 16 21 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 22 C -0.05 -2.93 5.33 84.86 0.45 -2.48 16 23 N -0.93 -59.53 10.59 21.65 0.23 -59.30 16 24 Si 0.97 48.97 29.56 68.60 2.03 51.00 16 25 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 27 H -0.28 -14.22 7.11 99.48 0.71 -13.52 16 28 C 0.18 10.28 5.27 86.36 0.45 10.74 16 29 C -0.14 -7.04 5.26 30.67 0.16 -6.88 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.11 1.37 8.03 -2.39 -0.02 1.35 16 36 H 0.11 1.15 4.44 -2.39 -0.01 1.14 16 37 H 0.22 0.41 7.56 -2.91 -0.02 0.38 16 38 H 0.11 -0.46 8.14 -2.39 -0.02 -0.48 16 39 H 0.10 -0.18 8.06 -2.39 -0.02 -0.20 16 40 H 0.11 -1.07 8.12 -2.39 -0.02 -1.09 16 41 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 42 H 0.10 3.29 7.86 -2.39 -0.02 3.27 16 43 H 0.04 1.94 6.41 -2.39 -0.02 1.92 16 44 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 46 H 0.05 2.40 7.93 -2.39 -0.02 2.38 16 47 H 0.25 15.39 8.31 -92.70 -0.77 14.62 16 48 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.06 3.72 5.89 -2.38 -0.01 3.70 16 50 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 51 H 0.04 2.24 6.03 -2.39 -0.01 2.22 16 Total: -1.00 -110.31 401.94 3.89 -106.43 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: 0.13 Total: 1.82 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 6.63 Total: 18.46 kcal Atomic # 7 Polarization: -114.15 SS G_CDS: -4.75 Total: -118.90 kcal Atomic # 8 Polarization: -58.66 SS G_CDS: -0.15 Total: -58.82 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 2.03 Total: 51.00 kcal Total: -110.31 3.89 -106.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713102021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.912 kcal (2) G-P(sol) polarization free energy of solvation -110.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds