Wall clock time and date at job start Wed Apr 1 2020 04:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46838 * 2 1 4 4 N 1.46497 * 109.46950 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99873 * 264.11162 * 4 3 2 6 6 H 1.08002 * 120.00127 * 188.01619 * 5 4 3 7 7 C 1.38812 * 120.00246 * 8.01617 * 5 4 3 8 8 N 1.31622 * 119.99561 * 25.64763 * 7 5 4 9 9 Si 1.86793 * 120.00347 * 205.64647 * 7 5 4 10 10 H 1.48501 * 109.47173 * 84.99116 * 9 7 5 11 11 H 1.48506 * 109.47246 * 204.98805 * 9 7 5 12 12 H 1.48500 * 109.47404 * 324.98511 * 9 7 5 13 13 C 1.46494 * 120.00444 * 84.11507 * 4 3 2 14 14 C 1.52997 * 109.47322 * 269.99975 * 13 4 3 15 15 N 1.46503 * 109.47514 * 179.97438 * 14 13 4 16 16 C 1.34776 * 120.00092 * 179.97438 * 15 14 13 17 17 O 1.21587 * 120.00222 * 0.02562 * 16 15 14 18 18 C 1.47606 * 119.99862 * 180.02562 * 16 15 14 19 19 C 1.39693 * 120.10038 * 0.02562 * 18 16 15 20 20 C 1.37702 * 119.88611 * 179.77880 * 19 18 16 21 21 C 1.39076 * 120.41519 * 0.29545 * 20 19 18 22 22 C 1.39251 * 120.09437 * 359.82040 * 21 20 19 23 23 C 1.38728 * 119.67551 * 0.24718 * 22 21 20 24 24 N 1.39908 * 121.85001 * 180.36069 * 22 21 20 25 25 C 1.46899 * 111.00244 * 215.08329 * 24 22 21 26 26 C 1.46756 * 112.10776 * 339.85428 * 24 22 21 27 27 C 1.53425 * 108.57817 * 50.27908 * 26 24 22 28 28 O 1.36005 * 118.60282 * 179.50750 * 21 20 19 29 29 H 1.08995 * 109.47425 * 299.99916 * 1 2 3 30 30 H 1.08996 * 109.47277 * 60.00532 * 1 2 3 31 31 H 1.09007 * 109.47293 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47425 * 240.00084 * 2 1 3 33 33 H 1.08996 * 109.47277 * 119.99468 * 2 1 3 34 34 H 1.08995 * 109.47044 * 59.99850 * 3 2 1 35 35 H 1.09003 * 109.47088 * 299.99561 * 3 2 1 36 36 H 0.96999 * 120.00045 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47483 * 149.99634 * 13 4 3 38 38 H 1.09002 * 109.47094 * 30.00031 * 13 4 3 39 39 H 1.08997 * 109.47120 * 59.99437 * 14 13 4 40 40 H 1.09002 * 109.47082 * 300.00064 * 14 13 4 41 41 H 0.96998 * 119.99830 * 0.02562 * 15 14 13 42 42 H 1.08002 * 120.05487 * 0.06270 * 19 18 16 43 43 H 1.08009 * 119.79078 * 180.31354 * 20 19 18 44 44 H 1.08003 * 119.93747 * 179.82090 * 23 22 21 45 45 H 1.09000 * 109.47054 * 60.00275 * 25 24 22 46 46 H 1.09002 * 109.46689 * 180.02562 * 25 24 22 47 47 H 1.08992 * 109.46926 * 299.99847 * 25 24 22 48 48 H 1.08996 * 109.61967 * 170.00353 * 26 24 22 49 49 H 1.09000 * 109.61801 * 290.55221 * 26 24 22 50 50 H 1.08994 * 109.77160 * 56.30744 * 27 26 24 51 51 H 1.08994 * 109.76972 * 177.09478 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1900 1.5641 1.1788 6 1 5.2621 1.6944 1.1696 7 6 3.5067 1.5199 2.3862 8 7 2.3565 0.8852 2.4686 9 14 4.2193 2.3610 3.8942 10 1 3.8323 3.7947 3.8905 11 1 3.6922 1.7092 5.1201 12 1 5.6998 2.2478 3.8709 13 6 4.2369 1.3128 -1.2629 14 6 4.4919 -0.1673 -1.5547 15 7 5.2234 -0.2973 -2.8173 16 6 5.5606 -1.5181 -3.2782 17 8 5.2572 -2.5116 -2.6464 18 6 6.2981 -1.6489 -4.5501 19 6 6.6482 -0.5088 -5.2775 20 6 7.3402 -0.6358 -6.4611 21 6 7.6885 -1.8935 -6.9417 22 6 7.3416 -3.0357 -6.2246 23 6 6.6431 -2.9123 -5.0323 24 7 7.6797 -4.3182 -6.6700 25 6 6.6290 -5.2872 -6.3311 26 6 7.9750 -4.3437 -8.1073 27 6 8.9841 -3.2308 -8.4189 28 8 8.3630 -1.9766 -8.1198 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 1.8788 0.8546 3.3122 37 1 5.1893 1.8373 -1.1863 38 1 3.6475 1.7461 -2.0710 39 1 3.5395 -0.6919 -1.6313 40 1 5.0812 -0.6007 -0.7466 41 1 5.4657 0.4953 -3.3212 42 1 6.3805 0.4707 -4.9097 43 1 7.6145 0.2470 -7.0197 44 1 6.3694 -3.7955 -4.4742 45 1 5.6932 -4.9886 -6.8036 46 1 6.9176 -6.2758 -6.6883 47 1 6.4969 -5.3164 -5.2496 48 1 8.4013 -5.3101 -8.3762 49 1 7.0582 -4.1751 -8.6723 50 1 9.8744 -3.3574 -7.8030 51 1 9.2567 -3.2650 -9.4736 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713547033.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:46 Heat of formation + Delta-G solvation = -5.189919 kcal Electronic energy + Delta-G solvation = -30419.601585 eV Core-core repulsion = 26320.529753 eV Total energy + Delta-G solvation = -4099.071832 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.43679 -39.54293 -37.48650 -36.92829 -36.48600 -34.40522 -31.94903 -31.70162 -31.05231 -30.74216 -29.42707 -27.85484 -25.71041 -25.48832 -24.86084 -23.55965 -22.33203 -21.59417 -20.79834 -20.09062 -19.61009 -18.63329 -17.71510 -17.15127 -16.81236 -16.25044 -15.60033 -15.38310 -15.04928 -14.96153 -14.84346 -14.71670 -14.34248 -13.94205 -13.90081 -13.84957 -13.54806 -13.37471 -12.92512 -12.74415 -12.66501 -12.50308 -12.34248 -12.16606 -11.94015 -11.56583 -11.34368 -11.27402 -11.04292 -11.01421 -10.83948 -10.60288 -10.37932 -10.29888 -9.95594 -9.90203 -9.82322 -9.61755 -9.21141 -8.82146 -8.56383 -8.32670 -7.96975 -6.92256 -5.76801 -3.08299 0.73365 1.06158 2.69392 2.97212 3.20639 3.40813 3.45886 3.49172 3.52247 3.80884 4.05608 4.28560 4.51110 4.52501 4.55512 4.78579 4.86426 4.93246 4.96748 5.00915 5.02636 5.17365 5.22262 5.32885 5.45095 5.52676 5.56094 5.71071 5.84875 5.88378 5.95664 6.12416 6.21105 6.23097 6.25251 6.31243 6.44568 6.55832 6.58235 6.68446 6.70581 6.72095 6.89770 7.02956 7.04631 7.21272 7.29655 7.68886 7.80079 7.81946 8.12716 8.34947 8.49921 9.23359 9.85060 10.29307 11.26601 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.002038 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.683487 B =13734.281238 C =14172.327686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.171 3.829 4 N -0.591 5.591 5 C -0.255 4.255 6 H 0.075 0.925 7 C 0.000 4.000 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.143 3.857 14 C 0.090 3.910 15 N -0.719 5.719 16 C 0.553 3.447 17 O -0.541 6.541 18 C -0.133 4.133 19 C -0.077 4.077 20 C -0.130 4.130 21 C 0.108 3.892 22 C 0.032 3.968 23 C -0.065 4.065 24 N -0.490 5.490 25 C 0.021 3.979 26 C 0.012 3.988 27 C 0.058 3.942 28 O -0.312 6.312 29 H 0.051 0.949 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.021 0.979 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.003 0.997 36 H 0.252 0.748 37 H 0.050 0.950 38 H 0.043 0.957 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.394 0.606 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.042 0.958 46 H 0.078 0.922 47 H 0.086 0.914 48 H 0.102 0.898 49 H 0.058 0.942 50 H 0.077 0.923 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.384 -7.218 -23.621 26.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.046 3.954 4 N -0.311 5.311 5 C -0.384 4.384 6 H 0.092 0.908 7 C -0.197 4.197 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.014 3.986 14 C -0.036 4.036 15 N -0.370 5.370 16 C 0.339 3.661 17 O -0.420 6.420 18 C -0.137 4.137 19 C -0.097 4.097 20 C -0.149 4.149 21 C 0.060 3.940 22 C -0.066 4.066 23 C -0.087 4.087 24 N -0.206 5.206 25 C -0.125 4.125 26 C -0.115 4.115 27 C -0.018 4.018 28 O -0.226 6.226 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.021 0.979 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.228 0.772 42 H 0.153 0.847 43 H 0.156 0.844 44 H 0.162 0.838 45 H 0.060 0.940 46 H 0.097 0.903 47 H 0.104 0.896 48 H 0.120 0.880 49 H 0.077 0.923 50 H 0.096 0.904 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.497 -7.984 -22.901 26.046 hybrid contribution -0.079 0.476 0.283 0.559 sum 9.417 -7.508 -22.618 25.625 Atomic orbital electron populations 1.21625 0.98593 0.99304 0.99985 1.22229 0.92895 1.00509 1.01409 1.20930 0.81532 0.94514 0.98397 1.44241 1.01915 1.83596 1.01388 1.19267 0.92243 1.43414 0.83479 0.90751 1.24726 0.97599 1.00127 0.97289 1.70166 1.17211 1.41195 1.24967 0.86371 0.78417 0.79880 0.82605 1.21614 1.21994 1.20775 1.20956 0.96402 0.91715 0.89505 1.22762 0.95953 1.01692 0.83164 1.46114 1.57974 1.07394 1.25489 1.18133 0.79387 0.83893 0.84672 1.90780 1.55050 1.37158 1.58963 1.19842 1.03440 0.93704 0.96709 1.21059 0.96760 0.98146 0.93748 1.20354 1.02468 0.95016 0.97092 1.18868 0.96089 0.93047 0.85983 1.18774 1.01963 0.88656 0.97199 1.21015 0.95872 0.98039 0.93725 1.58879 1.41803 1.04543 1.15386 1.22602 0.91614 0.94912 1.03366 1.22842 0.99978 1.01371 0.87268 1.23184 0.95030 0.80833 1.02733 1.86200 1.66046 1.35603 1.34760 0.92998 0.95094 0.94831 0.96021 0.88337 0.89208 0.97875 0.93729 0.93164 0.93880 0.91479 0.91371 0.77154 0.84667 0.84360 0.83805 0.93981 0.90278 0.89586 0.87987 0.92331 0.90431 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.91 37.15 0.37 -2.30 16 2 C -0.13 -2.97 5.61 -26.73 -0.15 -3.12 16 3 C 0.17 4.01 4.92 -4.04 -0.02 3.99 16 4 N -0.59 -14.09 2.54 -173.24 -0.44 -14.53 16 5 C -0.26 -6.72 9.70 -15.06 -0.15 -6.87 16 6 H 0.07 1.94 7.94 -52.49 -0.42 1.52 16 7 C 0.00 0.01 4.89 -17.43 -0.09 -0.07 16 8 N -0.89 -24.34 8.62 55.49 0.48 -23.86 16 9 Si 0.90 21.36 29.62 -169.99 -5.04 16.32 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.14 2.75 5.82 -4.05 -0.02 2.72 16 14 C 0.09 1.72 5.88 -4.04 -0.02 1.70 16 15 N -0.72 -11.05 5.51 -61.33 -0.34 -11.39 16 16 C 0.55 9.20 7.76 -12.44 -0.10 9.10 16 17 O -0.54 -11.20 16.33 5.29 0.09 -11.11 16 18 C -0.13 -1.78 5.87 -105.04 -0.62 -2.40 16 19 C -0.08 -0.82 9.53 -39.23 -0.37 -1.20 16 20 C -0.13 -1.32 9.91 -39.47 -0.39 -1.71 16 21 C 0.11 1.19 6.49 -38.89 -0.25 0.94 16 22 C 0.03 0.36 5.82 -83.61 -0.49 -0.12 16 23 C -0.07 -0.84 8.61 -38.91 -0.33 -1.18 16 24 N -0.49 -4.61 4.89 -178.69 -0.87 -5.48 16 25 C 0.02 0.16 8.94 60.06 0.54 0.70 16 26 C 0.01 0.08 5.72 -3.68 -0.02 0.06 16 27 C 0.06 0.38 7.25 37.38 0.27 0.65 16 28 O -0.31 -3.07 10.39 -19.76 -0.21 -3.28 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.02 0.48 5.97 -51.93 -0.31 0.17 16 33 H 0.10 2.59 6.33 -51.93 -0.33 2.27 16 34 H 0.09 2.34 5.85 -51.93 -0.30 2.04 16 35 H 0.00 0.07 7.98 -51.93 -0.41 -0.35 16 36 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 38 H 0.04 0.74 7.95 -51.93 -0.41 0.33 16 39 H 0.07 1.42 5.92 -51.93 -0.31 1.12 16 40 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 41 H 0.39 4.66 6.50 -40.82 -0.27 4.40 16 42 H 0.14 1.10 6.40 -52.49 -0.34 0.76 16 43 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 44 H 0.14 1.91 5.59 -52.48 -0.29 1.62 16 45 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.45 8.13 -51.93 -0.42 0.03 16 47 H 0.09 0.75 6.17 -51.93 -0.32 0.43 16 48 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 50 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 400.22 15.07 6.03 6.03 Total: -1.00 -31.91 400.22 -10.05 -41.96 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -7.91 Total: 4.45 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.85 Total: 0.89 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -1.17 Total: -55.26 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.12 Total: -14.39 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.04 Total: 16.32 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.91 -10.05 -41.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713547033.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.766 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds