Wall clock time and date at job start Wed Apr 1 2020 04:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46838 * 2 1 4 4 N 1.46497 * 109.46950 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99873 * 264.11162 * 4 3 2 6 6 H 1.08002 * 120.00127 * 188.01619 * 5 4 3 7 7 C 1.38812 * 120.00246 * 8.01617 * 5 4 3 8 8 N 1.31622 * 119.99561 * 25.64763 * 7 5 4 9 9 Si 1.86793 * 120.00347 * 205.64647 * 7 5 4 10 10 H 1.48501 * 109.47173 * 84.99116 * 9 7 5 11 11 H 1.48506 * 109.47246 * 204.98805 * 9 7 5 12 12 H 1.48500 * 109.47404 * 324.98511 * 9 7 5 13 13 C 1.46494 * 120.00444 * 84.11507 * 4 3 2 14 14 C 1.52997 * 109.47322 * 269.99975 * 13 4 3 15 15 N 1.46503 * 109.47514 * 179.97438 * 14 13 4 16 16 C 1.34776 * 120.00092 * 179.97438 * 15 14 13 17 17 O 1.21587 * 120.00222 * 0.02562 * 16 15 14 18 18 C 1.47606 * 119.99862 * 180.02562 * 16 15 14 19 19 C 1.39693 * 120.10038 * 0.02562 * 18 16 15 20 20 C 1.37702 * 119.88611 * 179.77880 * 19 18 16 21 21 C 1.39076 * 120.41519 * 0.29545 * 20 19 18 22 22 C 1.39251 * 120.09437 * 359.82040 * 21 20 19 23 23 C 1.38728 * 119.67551 * 0.24718 * 22 21 20 24 24 N 1.39908 * 121.85001 * 180.36069 * 22 21 20 25 25 C 1.46899 * 111.00244 * 215.08329 * 24 22 21 26 26 C 1.46756 * 112.10776 * 339.85428 * 24 22 21 27 27 C 1.53425 * 108.57817 * 50.27908 * 26 24 22 28 28 O 1.36005 * 118.60282 * 179.50750 * 21 20 19 29 29 H 1.08995 * 109.47425 * 299.99916 * 1 2 3 30 30 H 1.08996 * 109.47277 * 60.00532 * 1 2 3 31 31 H 1.09007 * 109.47293 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47425 * 240.00084 * 2 1 3 33 33 H 1.08996 * 109.47277 * 119.99468 * 2 1 3 34 34 H 1.08995 * 109.47044 * 59.99850 * 3 2 1 35 35 H 1.09003 * 109.47088 * 299.99561 * 3 2 1 36 36 H 0.96999 * 120.00045 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47483 * 149.99634 * 13 4 3 38 38 H 1.09002 * 109.47094 * 30.00031 * 13 4 3 39 39 H 1.08997 * 109.47120 * 59.99437 * 14 13 4 40 40 H 1.09002 * 109.47082 * 300.00064 * 14 13 4 41 41 H 0.96998 * 119.99830 * 0.02562 * 15 14 13 42 42 H 1.08002 * 120.05487 * 0.06270 * 19 18 16 43 43 H 1.08009 * 119.79078 * 180.31354 * 20 19 18 44 44 H 1.08003 * 119.93747 * 179.82090 * 23 22 21 45 45 H 1.09000 * 109.47054 * 60.00275 * 25 24 22 46 46 H 1.09002 * 109.46689 * 180.02562 * 25 24 22 47 47 H 1.08992 * 109.46926 * 299.99847 * 25 24 22 48 48 H 1.08996 * 109.61967 * 170.00353 * 26 24 22 49 49 H 1.09000 * 109.61801 * 290.55221 * 26 24 22 50 50 H 1.08994 * 109.77160 * 56.30744 * 27 26 24 51 51 H 1.08994 * 109.76972 * 177.09478 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1900 1.5641 1.1788 6 1 5.2621 1.6944 1.1696 7 6 3.5067 1.5199 2.3862 8 7 2.3565 0.8852 2.4686 9 14 4.2193 2.3610 3.8942 10 1 3.8323 3.7947 3.8905 11 1 3.6922 1.7092 5.1201 12 1 5.6998 2.2478 3.8709 13 6 4.2369 1.3128 -1.2629 14 6 4.4919 -0.1673 -1.5547 15 7 5.2234 -0.2973 -2.8173 16 6 5.5606 -1.5181 -3.2782 17 8 5.2572 -2.5116 -2.6464 18 6 6.2981 -1.6489 -4.5501 19 6 6.6482 -0.5088 -5.2775 20 6 7.3402 -0.6358 -6.4611 21 6 7.6885 -1.8935 -6.9417 22 6 7.3416 -3.0357 -6.2246 23 6 6.6431 -2.9123 -5.0323 24 7 7.6797 -4.3182 -6.6700 25 6 6.6290 -5.2872 -6.3311 26 6 7.9750 -4.3437 -8.1073 27 6 8.9841 -3.2308 -8.4189 28 8 8.3630 -1.9766 -8.1198 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 1.8788 0.8546 3.3122 37 1 5.1893 1.8373 -1.1863 38 1 3.6475 1.7461 -2.0710 39 1 3.5395 -0.6919 -1.6313 40 1 5.0812 -0.6007 -0.7466 41 1 5.4657 0.4953 -3.3212 42 1 6.3805 0.4707 -4.9097 43 1 7.6145 0.2470 -7.0197 44 1 6.3694 -3.7955 -4.4742 45 1 5.6932 -4.9886 -6.8036 46 1 6.9176 -6.2758 -6.6883 47 1 6.4969 -5.3164 -5.2496 48 1 8.4013 -5.3101 -8.3762 49 1 7.0582 -4.1751 -8.6723 50 1 9.8744 -3.3574 -7.8030 51 1 9.2567 -3.2650 -9.4736 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713547033.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:44 Heat of formation + Delta-G solvation = -25.893232 kcal Electronic energy + Delta-G solvation = -30420.499348 eV Core-core repulsion = 26320.529753 eV Total energy + Delta-G solvation = -4099.969595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.20568 -40.79231 -38.49854 -38.14121 -37.65766 -35.94244 -33.73698 -33.28683 -32.07695 -31.60933 -30.24782 -29.31828 -27.35440 -26.57817 -25.65140 -25.03605 -23.36910 -22.55930 -22.43575 -21.78285 -20.77061 -19.44425 -18.83268 -18.56469 -17.92724 -17.09964 -17.04742 -16.64618 -16.48666 -16.14329 -15.68125 -15.59791 -15.50946 -15.33081 -15.13394 -15.05778 -14.72484 -14.57705 -14.38237 -14.16765 -14.07200 -13.50689 -13.41037 -13.14435 -13.04675 -12.85252 -12.79269 -12.64139 -12.61220 -12.38896 -12.17558 -12.04242 -11.80461 -11.74679 -11.68683 -11.54471 -11.15080 -11.05261 -11.02897 -10.31646 -10.10269 -9.61168 -8.84685 -8.75305 -7.78304 -5.10661 -0.22081 0.22299 1.50334 1.53078 1.59218 1.72765 2.10593 2.19433 2.54190 2.59452 2.82548 3.29691 3.42419 3.58685 3.67219 3.84549 3.97255 4.05073 4.10911 4.16878 4.23694 4.27163 4.35441 4.37792 4.44105 4.53432 4.62565 4.65414 4.68622 4.71113 4.74981 4.85302 4.86181 4.92057 4.97224 5.04454 5.07715 5.14888 5.25964 5.28251 5.38462 5.46149 5.48245 5.53993 5.66992 5.74726 5.85423 5.89055 6.20495 6.28499 6.38001 6.56935 7.21642 7.24216 7.93793 8.32870 9.22631 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.002038 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.683487 B =13734.281238 C =14172.327686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.122 4.122 3 C 0.175 3.825 4 N -0.607 5.607 5 C -0.263 4.263 6 H 0.073 0.927 7 C -0.048 4.048 8 N -0.909 5.909 9 Si 0.955 3.045 10 H -0.287 1.287 11 H -0.302 1.302 12 H -0.278 1.278 13 C 0.145 3.855 14 C 0.111 3.889 15 N -0.703 5.703 16 C 0.552 3.448 17 O -0.592 6.592 18 C -0.153 4.153 19 C -0.068 4.068 20 C -0.128 4.128 21 C 0.106 3.894 22 C 0.027 3.973 23 C -0.081 4.081 24 N -0.501 5.501 25 C 0.021 3.979 26 C 0.011 3.989 27 C 0.051 3.949 28 O -0.319 6.319 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.021 0.979 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.027 0.973 36 H 0.246 0.754 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.029 0.971 41 H 0.415 0.585 42 H 0.163 0.837 43 H 0.166 0.834 44 H 0.128 0.872 45 H 0.039 0.961 46 H 0.103 0.897 47 H 0.069 0.931 48 H 0.129 0.871 49 H 0.059 0.941 50 H 0.077 0.923 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.590 -6.199 -26.785 29.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.050 3.950 4 N -0.328 5.328 5 C -0.392 4.392 6 H 0.091 0.909 7 C -0.244 4.244 8 N -0.555 5.555 9 Si 0.784 3.216 10 H -0.214 1.214 11 H -0.229 1.229 12 H -0.203 1.203 13 C 0.018 3.982 14 C -0.016 4.016 15 N -0.356 5.356 16 C 0.341 3.659 17 O -0.474 6.474 18 C -0.157 4.157 19 C -0.087 4.087 20 C -0.147 4.147 21 C 0.058 3.942 22 C -0.071 4.071 23 C -0.102 4.102 24 N -0.217 5.217 25 C -0.124 4.124 26 C -0.115 4.115 27 C -0.023 4.023 28 O -0.233 6.233 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.253 0.747 42 H 0.180 0.820 43 H 0.183 0.817 44 H 0.146 0.854 45 H 0.058 0.942 46 H 0.122 0.878 47 H 0.088 0.912 48 H 0.147 0.853 49 H 0.077 0.923 50 H 0.095 0.905 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.735 -6.938 -26.124 29.083 hybrid contribution -0.346 0.074 1.105 1.160 sum 10.389 -6.864 -25.019 27.946 Atomic orbital electron populations 1.21526 0.96113 1.00322 1.00671 1.22029 0.95090 0.99699 0.99306 1.20821 0.81593 0.94611 0.97998 1.44431 1.02348 1.83811 1.02181 1.19490 0.92370 1.42727 0.84649 0.90916 1.25365 0.98422 1.01015 0.99585 1.70338 1.18189 1.42072 1.24889 0.85470 0.77830 0.78693 0.79561 1.21388 1.22890 1.20318 1.21091 0.97163 0.91440 0.88511 1.22207 0.94489 1.01185 0.83684 1.45808 1.57280 1.08201 1.24288 1.18667 0.78697 0.83222 0.85356 1.90750 1.57161 1.38819 1.60703 1.19600 1.05068 0.95110 0.95875 1.21282 0.95812 0.98156 0.93452 1.20678 1.01535 0.95705 0.96796 1.19114 0.95651 0.93208 0.86231 1.18876 1.01498 0.90022 0.96695 1.20976 0.97064 0.97561 0.94646 1.58929 1.41850 1.03699 1.17250 1.22614 0.91440 0.95870 1.02485 1.23017 1.00187 1.02972 0.85361 1.23525 0.94550 0.79477 1.04784 1.86198 1.65782 1.37438 1.33854 0.93948 0.92646 0.93695 0.95995 0.92458 0.92061 0.95492 0.94488 0.91750 0.90880 0.93746 0.95221 0.74686 0.82007 0.81679 0.85375 0.94247 0.87808 0.91208 0.85252 0.92315 0.90517 0.83181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.92 9.91 71.98 0.71 -4.21 16 2 C -0.12 -5.59 5.61 30.59 0.17 -5.41 16 3 C 0.17 8.17 4.92 86.38 0.42 8.60 16 4 N -0.61 -28.93 2.54 -702.02 -1.78 -30.71 16 5 C -0.26 -13.97 9.70 84.03 0.81 -13.16 16 6 H 0.07 3.81 7.94 -2.91 -0.02 3.79 16 7 C -0.05 -2.63 4.89 84.86 0.41 -2.21 16 8 N -0.91 -51.16 8.62 21.65 0.19 -50.97 16 9 Si 0.95 44.69 29.62 68.60 2.03 46.72 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 11 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 C 0.15 5.42 5.82 86.38 0.50 5.92 16 14 C 0.11 4.32 5.88 86.38 0.51 4.83 16 15 N -0.70 -21.31 5.51 -466.20 -2.57 -23.88 16 16 C 0.55 18.80 7.76 86.72 0.67 19.47 16 17 O -0.59 -25.96 16.33 -3.99 -0.07 -26.02 16 18 C -0.15 -4.08 5.87 -20.13 -0.12 -4.19 16 19 C -0.07 -1.29 9.53 22.49 0.21 -1.07 16 20 C -0.13 -2.24 9.91 22.34 0.22 -2.02 16 21 C 0.11 2.14 6.49 22.71 0.15 2.28 16 22 C 0.03 0.60 5.82 38.21 0.22 0.83 16 23 C -0.08 -2.15 8.61 22.71 0.20 -1.95 16 24 N -0.50 -8.88 4.89 -719.24 -3.52 -12.39 16 25 C 0.02 0.33 8.94 127.69 1.14 1.47 16 26 C 0.01 0.11 5.72 86.47 0.49 0.61 16 27 C 0.05 0.51 7.25 72.12 0.52 1.04 16 28 O -0.32 -5.39 10.39 -93.61 -0.97 -6.37 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.02 0.98 5.97 -2.39 -0.01 0.96 16 33 H 0.06 3.13 6.33 -2.39 -0.02 3.11 16 34 H 0.06 3.24 5.85 -2.39 -0.01 3.22 16 35 H 0.03 1.12 7.98 -2.39 -0.02 1.10 16 36 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 37 H 0.06 2.23 8.03 -2.39 -0.02 2.21 16 38 H 0.07 2.31 7.95 -2.39 -0.02 2.29 16 39 H 0.04 1.94 5.92 -2.39 -0.01 1.93 16 40 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 41 H 0.41 8.92 6.50 -92.71 -0.60 8.32 16 42 H 0.16 2.08 6.40 -2.91 -0.02 2.06 16 43 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 44 H 0.13 3.72 5.59 -2.91 -0.02 3.70 16 45 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.10 1.04 8.13 -2.39 -0.02 1.02 16 47 H 0.07 1.30 6.17 -2.39 -0.01 1.29 16 48 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 50 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -72.58 400.22 0.92 -71.66 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.34 Total: 21.15 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 7.26 Total: 10.82 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -7.68 Total: -117.95 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -1.04 Total: -32.39 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -72.58 0.92 -71.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713547033.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.767 kcal (2) G-P(sol) polarization free energy of solvation -72.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds