Wall clock time and date at job start Wed Apr 1 2020 05:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46889 * 2 1 4 4 N 1.46502 * 109.47065 * 180.02562 * 3 2 1 5 5 C 1.34774 * 120.00038 * 83.42737 * 4 3 2 6 6 O 1.21554 * 119.99692 * 46.08348 * 5 4 3 7 7 C 1.47833 * 120.00510 * 226.07850 * 5 4 3 8 8 C 1.39566 * 120.56043 * 345.21852 * 7 5 4 9 9 N 1.31666 * 120.56823 * 179.97438 * 8 7 5 10 10 C 1.31946 * 121.87655 * 0.02562 * 9 8 7 11 11 C 1.38316 * 121.08840 * 0.02562 * 10 9 8 12 12 C 1.50694 * 120.35045 * 179.97438 * 11 10 9 13 13 O 1.42900 * 109.47093 * 90.00074 * 12 11 10 14 14 C 1.42900 * 114.00477 * 179.97438 * 13 12 11 15 15 C 1.38400 * 119.29648 * 359.67982 * 11 10 9 16 16 C 1.46499 * 119.99660 * 263.43551 * 4 3 2 17 17 H 1.09002 * 110.63941 * 312.90358 * 16 4 3 18 18 C 1.55151 * 110.72558 * 76.05235 * 16 4 3 19 19 C 1.55119 * 101.48768 * 153.73155 * 18 16 4 20 20 N 1.47417 * 104.94409 * 323.22130 * 19 18 16 21 21 C 1.36942 * 125.65161 * 203.96901 * 20 19 18 22 22 H 1.08000 * 119.99949 * 180.02562 * 21 20 19 23 23 C 1.38810 * 119.99748 * 0.03924 * 21 20 19 24 24 N 1.31623 * 119.99929 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99997 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47289 * 90.00077 * 25 23 21 27 27 H 1.48505 * 109.47116 * 210.00362 * 25 23 21 28 28 H 1.48504 * 109.47159 * 329.99965 * 25 23 21 29 29 C 1.47024 * 108.70318 * 24.00367 * 20 19 18 30 30 H 1.08997 * 109.47469 * 300.00098 * 1 2 3 31 31 H 1.09000 * 109.47427 * 60.00205 * 1 2 3 32 32 H 1.09000 * 109.47189 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47249 * 239.99500 * 2 1 3 34 34 H 1.08998 * 109.46717 * 119.99580 * 2 1 3 35 35 H 1.08997 * 109.47145 * 59.99703 * 3 2 1 36 36 H 1.09000 * 109.46918 * 300.00106 * 3 2 1 37 37 H 1.08004 * 119.71435 * 359.97438 * 8 7 5 38 38 H 1.08010 * 119.45841 * 179.97438 * 10 9 8 39 39 H 1.08997 * 109.47169 * 209.99620 * 12 11 10 40 40 H 1.08995 * 109.47150 * 330.00285 * 12 11 10 41 41 H 1.09000 * 109.46644 * 59.99504 * 14 13 12 42 42 H 1.08993 * 109.47674 * 180.02562 * 14 13 12 43 43 H 1.09003 * 109.46794 * 300.00316 * 14 13 12 44 44 H 1.08004 * 120.85045 * 180.29626 * 15 11 10 45 45 H 1.09003 * 111.00529 * 271.94294 * 18 16 4 46 46 H 1.09005 * 111.00561 * 35.78703 * 18 16 4 47 47 H 1.09002 * 110.41775 * 204.29509 * 19 18 16 48 48 H 1.08997 * 110.29895 * 82.09111 * 19 18 16 49 49 H 0.97001 * 119.99908 * 180.02562 * 24 23 21 50 50 H 1.09000 * 109.88141 * 239.52230 * 29 20 19 51 51 H 1.08996 * 109.88482 * 118.35704 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1784 1.3092 -1.1604 6 8 3.8494 1.9606 -2.1325 7 6 5.3171 0.3707 -1.2504 8 6 5.9014 -0.1490 -0.0944 9 7 6.9152 -0.9852 -0.1744 10 6 7.4169 -1.3631 -1.3348 11 6 6.8947 -0.8924 -2.5259 12 6 7.4810 -1.3346 -3.8418 13 8 6.8077 -2.5120 -4.2916 14 6 7.2896 -3.0167 -5.5387 15 6 5.8242 -0.0157 -2.4966 16 6 4.2379 1.5875 1.2595 17 1 3.8288 2.4074 1.8499 18 6 4.2099 0.2626 2.0665 19 6 5.5081 0.3850 2.9065 20 7 6.4795 1.0401 2.0118 21 6 7.8424 0.9526 2.1124 22 1 8.4706 1.4727 1.4044 23 6 8.4165 0.1951 3.1241 24 7 7.6508 -0.4395 3.9864 25 14 10.2756 0.0763 3.2617 26 1 10.7782 1.1681 4.1337 27 1 10.6456 -1.2365 3.8492 28 1 10.8810 0.2026 1.9116 29 6 5.7427 1.8036 0.9941 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 5.5186 0.1372 0.8741 38 1 8.2495 -2.0508 -1.3548 39 1 7.3577 -0.5415 -4.5793 40 1 8.5418 -1.5494 -3.7131 41 1 8.3465 -3.2662 -5.4456 42 1 6.7275 -3.9101 -5.8107 43 1 7.1620 -2.2583 -6.3112 44 1 5.3939 0.3638 -3.4116 45 1 3.3295 0.2140 2.7074 46 1 4.2557 -0.6005 1.4023 47 1 5.8668 -0.6021 3.1982 48 1 5.3309 0.9996 3.7891 49 1 8.0520 -0.9685 4.6936 50 1 5.9998 1.4395 -0.0006 51 1 5.9855 2.8629 1.0776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713717734.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:01 Heat of formation + Delta-G solvation = 95.875608 kcal Electronic energy + Delta-G solvation = -32988.003849 eV Core-core repulsion = 28893.314548 eV Total energy + Delta-G solvation = -4094.689302 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.73667 -39.01972 -38.20899 -37.54213 -35.60982 -33.41256 -32.50931 -31.81044 -31.64237 -29.35268 -27.92151 -27.20059 -26.06144 -25.45559 -24.75833 -23.79749 -22.29213 -21.58779 -20.81192 -20.40789 -18.64251 -17.67878 -17.30997 -16.71235 -16.44190 -16.14529 -15.71541 -15.64330 -15.11645 -14.92839 -14.76147 -14.62467 -14.23782 -13.83106 -13.65418 -13.34581 -12.87251 -12.72974 -12.58461 -12.46167 -12.38606 -12.17189 -11.97855 -11.82292 -11.78011 -11.47649 -11.36850 -11.23149 -11.08297 -10.96279 -10.81827 -10.65426 -10.26003 -10.11913 -9.98306 -9.89316 -9.80171 -9.66782 -9.42968 -8.74463 -8.63481 -8.22757 -8.11622 -6.93500 -5.71398 -3.14329 1.04171 1.63928 2.84894 3.14697 3.39622 3.45444 3.46928 3.79220 4.41064 4.45420 4.62526 4.90608 4.94040 4.97723 5.00223 5.02932 5.14305 5.19973 5.22324 5.24721 5.27079 5.29110 5.30313 5.38760 5.46305 5.48838 5.51277 5.58512 5.60126 5.68066 5.76248 5.91618 5.96692 5.98513 6.05700 6.11198 6.15210 6.22668 6.34943 6.39136 6.44692 6.49245 6.66064 6.97060 7.04345 7.15187 7.29989 7.50278 7.57602 7.75426 8.16524 8.22607 8.63452 9.10611 9.71589 10.26228 11.32995 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006931 B = 0.005712 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4038.964125 B = 4900.563121 C = 8029.477057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.130 3.870 4 N -0.646 5.646 5 C 0.601 3.399 6 O -0.520 6.520 7 C -0.251 4.251 8 C 0.149 3.851 9 N -0.461 5.461 10 C 0.147 3.853 11 C -0.193 4.193 12 C 0.116 3.884 13 O -0.386 6.386 14 C 0.031 3.969 15 C -0.002 4.002 16 C 0.133 3.867 17 H 0.095 0.905 18 C -0.182 4.182 19 C 0.142 3.858 20 N -0.583 5.583 21 C -0.219 4.219 22 H 0.074 0.926 23 C 0.008 3.992 24 N -0.916 5.916 25 Si 0.914 3.086 26 H -0.291 1.291 27 H -0.289 1.289 28 H -0.282 1.282 29 C 0.066 3.934 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.243 0.757 38 H 0.149 0.851 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.041 0.959 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.133 0.867 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.121 0.879 48 H 0.024 0.976 49 H 0.254 0.746 50 H 0.072 0.928 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.368 -1.807 -11.061 13.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.007 3.993 4 N -0.381 5.381 5 C 0.392 3.608 6 O -0.395 6.395 7 C -0.257 4.257 8 C -0.007 4.007 9 N -0.167 5.167 10 C -0.010 4.010 11 C -0.195 4.195 12 C 0.039 3.961 13 O -0.306 6.306 14 C -0.066 4.066 15 C -0.028 4.028 16 C 0.029 3.971 17 H 0.113 0.887 18 C -0.222 4.222 19 C 0.017 3.983 20 N -0.310 5.310 21 C -0.346 4.346 22 H 0.091 0.909 23 C -0.188 4.188 24 N -0.564 5.564 25 Si 0.745 3.255 26 H -0.218 1.218 27 H -0.215 1.215 28 H -0.207 1.207 29 C -0.059 4.059 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.257 0.743 38 H 0.166 0.834 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.103 0.897 43 H 0.058 0.942 44 H 0.151 0.849 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.139 0.861 48 H 0.042 0.958 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.135 -1.940 -10.571 13.480 hybrid contribution 1.013 0.515 -0.964 1.490 sum -7.122 -1.425 -11.535 13.632 Atomic orbital electron populations 1.21682 0.95304 1.01798 1.01741 1.22060 0.95905 0.97634 1.02980 1.21375 0.78500 0.96464 1.02943 1.47301 1.05964 1.78801 1.06040 1.18002 0.81223 0.79444 0.82171 1.90670 1.67527 1.42325 1.38971 1.21540 1.02254 1.05831 0.96093 1.27047 0.88525 0.83264 1.01889 1.68270 1.10578 1.12113 1.25784 1.23138 0.96505 0.93759 0.87572 1.20340 1.00793 1.02806 0.95588 1.21162 0.95241 0.87202 0.92506 1.87997 1.60952 1.43590 1.38023 1.22734 0.99109 0.99017 0.85744 1.21383 0.91903 0.92313 0.97207 1.22283 0.92289 0.98737 0.83792 0.88698 1.23939 1.01581 0.96651 1.00046 1.22250 0.83712 1.02125 0.90188 1.44777 1.02565 1.53733 1.29910 1.18801 0.79251 1.25758 1.10813 0.90854 1.24650 0.97908 0.99058 0.97215 1.69714 1.32660 1.35618 1.18368 0.86094 0.84852 0.77032 0.77563 1.21796 1.21522 1.20719 1.22966 0.89458 0.96717 0.96724 0.92542 0.92793 0.92569 0.92126 0.90940 0.90347 0.90708 0.74308 0.83374 0.92592 0.92209 0.94052 0.89732 0.94191 0.84945 0.90803 0.90227 0.86112 0.95820 0.93558 0.91210 0.94857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.99 16 2 C -0.15 -1.71 6.20 -26.73 -0.17 -1.88 16 3 C 0.13 1.64 5.61 -4.04 -0.02 1.61 16 4 N -0.65 -10.21 2.51 -165.14 -0.41 -10.62 16 5 C 0.60 10.91 6.08 -12.34 -0.08 10.84 16 6 O -0.52 -10.27 16.76 5.32 0.09 -10.18 16 7 C -0.25 -4.70 4.83 -104.82 -0.51 -5.21 16 8 C 0.15 3.03 5.74 -17.13 -0.10 2.94 16 9 N -0.46 -9.80 9.93 -38.13 -0.38 -10.18 16 10 C 0.15 2.65 10.85 -17.47 -0.19 2.46 16 11 C -0.19 -3.12 5.52 -104.54 -0.58 -3.70 16 12 C 0.12 1.49 6.08 36.00 0.22 1.71 16 13 O -0.39 -5.24 10.69 -35.23 -0.38 -5.62 16 14 C 0.03 0.28 11.01 101.05 1.11 1.40 16 15 C 0.00 -0.03 9.39 -38.87 -0.37 -0.40 16 16 C 0.13 2.21 3.29 -66.10 -0.22 1.99 16 17 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 18 C -0.18 -3.10 5.16 -24.47 -0.13 -3.23 16 19 C 0.14 3.09 5.58 -2.42 -0.01 3.08 16 20 N -0.58 -13.66 2.06 -190.75 -0.39 -14.05 16 21 C -0.22 -5.73 9.55 -15.06 -0.14 -5.88 16 22 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 23 C 0.01 0.21 5.49 -17.43 -0.10 0.12 16 24 N -0.92 -25.03 10.09 55.49 0.56 -24.47 16 25 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C 0.07 1.35 5.39 -3.06 -0.02 1.33 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.87 7.30 -51.93 -0.38 0.49 16 35 H 0.08 0.83 8.02 -51.93 -0.42 0.42 16 36 H 0.07 0.97 7.66 -51.93 -0.40 0.57 16 37 H 0.24 4.91 0.24 -90.00 -0.02 4.89 16 38 H 0.15 2.31 8.06 -52.48 -0.42 1.88 16 39 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 41 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.13 2.10 7.81 -52.48 -0.41 1.69 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.08 1.43 6.32 -51.93 -0.33 1.10 16 47 H 0.12 3.03 5.87 -51.93 -0.30 2.72 16 48 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 50 H 0.07 1.50 2.51 -103.85 -0.26 1.24 16 51 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -30.60 394.27 -8.89 -39.49 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -7.98 Total: 6.86 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -0.91 Total: 6.19 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.63 Total: -59.33 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.29 Total: -15.80 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.60 -8.89 -39.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713717734.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.361 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds