Wall clock time and date at job start Wed Apr 1 2020 05:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46889 * 2 1 4 4 N 1.46502 * 109.47065 * 180.02562 * 3 2 1 5 5 C 1.34774 * 120.00038 * 83.42737 * 4 3 2 6 6 O 1.21554 * 119.99692 * 46.08348 * 5 4 3 7 7 C 1.47833 * 120.00510 * 226.07850 * 5 4 3 8 8 C 1.39566 * 120.56043 * 345.21852 * 7 5 4 9 9 N 1.31666 * 120.56823 * 179.97438 * 8 7 5 10 10 C 1.31946 * 121.87655 * 0.02562 * 9 8 7 11 11 C 1.38316 * 121.08840 * 0.02562 * 10 9 8 12 12 C 1.50694 * 120.35045 * 179.97438 * 11 10 9 13 13 O 1.42900 * 109.47093 * 90.00074 * 12 11 10 14 14 C 1.42900 * 114.00477 * 179.97438 * 13 12 11 15 15 C 1.38400 * 119.29648 * 359.67982 * 11 10 9 16 16 C 1.46499 * 119.99660 * 263.43551 * 4 3 2 17 17 H 1.09002 * 110.63941 * 312.90358 * 16 4 3 18 18 C 1.55151 * 110.72558 * 76.05235 * 16 4 3 19 19 C 1.55119 * 101.48768 * 153.73155 * 18 16 4 20 20 N 1.47417 * 104.94409 * 323.22130 * 19 18 16 21 21 C 1.36942 * 125.65161 * 203.96901 * 20 19 18 22 22 H 1.08000 * 119.99949 * 180.02562 * 21 20 19 23 23 C 1.38810 * 119.99748 * 0.03924 * 21 20 19 24 24 N 1.31623 * 119.99929 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99997 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47289 * 90.00077 * 25 23 21 27 27 H 1.48505 * 109.47116 * 210.00362 * 25 23 21 28 28 H 1.48504 * 109.47159 * 329.99965 * 25 23 21 29 29 C 1.47024 * 108.70318 * 24.00367 * 20 19 18 30 30 H 1.08997 * 109.47469 * 300.00098 * 1 2 3 31 31 H 1.09000 * 109.47427 * 60.00205 * 1 2 3 32 32 H 1.09000 * 109.47189 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47249 * 239.99500 * 2 1 3 34 34 H 1.08998 * 109.46717 * 119.99580 * 2 1 3 35 35 H 1.08997 * 109.47145 * 59.99703 * 3 2 1 36 36 H 1.09000 * 109.46918 * 300.00106 * 3 2 1 37 37 H 1.08004 * 119.71435 * 359.97438 * 8 7 5 38 38 H 1.08010 * 119.45841 * 179.97438 * 10 9 8 39 39 H 1.08997 * 109.47169 * 209.99620 * 12 11 10 40 40 H 1.08995 * 109.47150 * 330.00285 * 12 11 10 41 41 H 1.09000 * 109.46644 * 59.99504 * 14 13 12 42 42 H 1.08993 * 109.47674 * 180.02562 * 14 13 12 43 43 H 1.09003 * 109.46794 * 300.00316 * 14 13 12 44 44 H 1.08004 * 120.85045 * 180.29626 * 15 11 10 45 45 H 1.09003 * 111.00529 * 271.94294 * 18 16 4 46 46 H 1.09005 * 111.00561 * 35.78703 * 18 16 4 47 47 H 1.09002 * 110.41775 * 204.29509 * 19 18 16 48 48 H 1.08997 * 110.29895 * 82.09111 * 19 18 16 49 49 H 0.97001 * 119.99908 * 180.02562 * 24 23 21 50 50 H 1.09000 * 109.88141 * 239.52230 * 29 20 19 51 51 H 1.08996 * 109.88482 * 118.35704 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1784 1.3092 -1.1604 6 8 3.8494 1.9606 -2.1325 7 6 5.3171 0.3707 -1.2504 8 6 5.9014 -0.1490 -0.0944 9 7 6.9152 -0.9852 -0.1744 10 6 7.4169 -1.3631 -1.3348 11 6 6.8947 -0.8924 -2.5259 12 6 7.4810 -1.3346 -3.8418 13 8 6.8077 -2.5120 -4.2916 14 6 7.2896 -3.0167 -5.5387 15 6 5.8242 -0.0157 -2.4966 16 6 4.2379 1.5875 1.2595 17 1 3.8288 2.4074 1.8499 18 6 4.2099 0.2626 2.0665 19 6 5.5081 0.3850 2.9065 20 7 6.4795 1.0401 2.0118 21 6 7.8424 0.9526 2.1124 22 1 8.4706 1.4727 1.4044 23 6 8.4165 0.1951 3.1241 24 7 7.6508 -0.4395 3.9864 25 14 10.2756 0.0763 3.2617 26 1 10.7782 1.1681 4.1337 27 1 10.6456 -1.2365 3.8492 28 1 10.8810 0.2026 1.9116 29 6 5.7427 1.8036 0.9941 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 5.5186 0.1372 0.8741 38 1 8.2495 -2.0508 -1.3548 39 1 7.3577 -0.5415 -4.5793 40 1 8.5418 -1.5494 -3.7131 41 1 8.3465 -3.2662 -5.4456 42 1 6.7275 -3.9101 -5.8107 43 1 7.1620 -2.2583 -6.3112 44 1 5.3939 0.3638 -3.4116 45 1 3.3295 0.2140 2.7074 46 1 4.2557 -0.6005 1.4023 47 1 5.8668 -0.6021 3.1982 48 1 5.3309 0.9996 3.7891 49 1 8.0520 -0.9685 4.6936 50 1 5.9998 1.4395 -0.0006 51 1 5.9855 2.8629 1.0776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713717734.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:00 Heat of formation + Delta-G solvation = 77.242783 kcal Electronic energy + Delta-G solvation = -32988.811829 eV Core-core repulsion = 28893.314548 eV Total energy + Delta-G solvation = -4095.497282 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.19217 -40.34119 -39.70407 -38.59584 -36.88378 -34.89372 -33.84417 -33.41073 -32.96015 -31.04637 -29.29698 -28.25544 -27.26725 -26.62016 -26.37486 -25.15841 -23.61495 -22.73667 -22.25370 -21.99135 -20.01056 -19.28811 -18.91220 -18.03739 -17.50139 -17.37176 -17.06867 -16.82819 -16.62981 -16.32108 -16.12955 -15.71612 -15.54631 -15.40925 -14.97405 -14.71442 -14.32587 -14.06494 -13.90224 -13.84933 -13.40756 -13.32992 -13.15984 -13.05432 -13.00383 -12.85524 -12.80100 -12.63633 -12.53124 -12.34414 -12.11668 -12.03658 -11.92175 -11.80307 -11.49216 -11.36743 -11.26752 -10.87696 -10.70133 -10.64869 -10.13008 -9.63201 -9.45979 -8.81503 -7.72267 -5.15406 -0.38064 0.26744 1.44791 1.48268 1.49587 1.56826 1.85459 2.51440 2.69577 3.15080 3.27792 3.37912 3.48821 3.63189 3.76635 3.78567 3.83979 3.90468 3.97826 4.01556 4.07860 4.15622 4.18335 4.36163 4.41532 4.46650 4.54451 4.55741 4.59652 4.62453 4.67953 4.72459 4.74050 4.81667 4.86341 4.89805 4.97894 5.03012 5.10679 5.22046 5.24520 5.27722 5.43066 5.48803 5.57091 5.70644 5.74752 5.82357 6.18309 6.21421 6.34273 6.79353 7.12497 7.19040 7.75737 8.32431 9.29186 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006931 B = 0.005712 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4038.964125 B = 4900.563121 C = 8029.477057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.143 4.143 3 C 0.125 3.875 4 N -0.639 5.639 5 C 0.601 3.399 6 O -0.539 6.539 7 C -0.259 4.259 8 C 0.133 3.867 9 N -0.501 5.501 10 C 0.132 3.868 11 C -0.180 4.180 12 C 0.118 3.882 13 O -0.414 6.414 14 C 0.024 3.976 15 C -0.008 4.008 16 C 0.147 3.853 17 H 0.123 0.877 18 C -0.162 4.162 19 C 0.146 3.854 20 N -0.597 5.597 21 C -0.218 4.218 22 H 0.061 0.939 23 C -0.038 4.038 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.279 1.279 29 C 0.061 3.939 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.239 0.761 38 H 0.167 0.833 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.095 0.905 43 H 0.053 0.947 44 H 0.146 0.854 45 H 0.110 0.890 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.011 0.989 49 H 0.247 0.753 50 H 0.067 0.933 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.583 -1.574 -12.381 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.182 4.182 3 C 0.004 3.996 4 N -0.374 5.374 5 C 0.392 3.608 6 O -0.417 6.417 7 C -0.265 4.265 8 C -0.024 4.024 9 N -0.209 5.209 10 C -0.024 4.024 11 C -0.182 4.182 12 C 0.041 3.959 13 O -0.334 6.334 14 C -0.071 4.071 15 C -0.034 4.034 16 C 0.043 3.957 17 H 0.141 0.859 18 C -0.201 4.201 19 C 0.022 3.978 20 N -0.323 5.323 21 C -0.346 4.346 22 H 0.079 0.921 23 C -0.232 4.232 24 N -0.584 5.584 25 Si 0.794 3.206 26 H -0.216 1.216 27 H -0.219 1.219 28 H -0.205 1.205 29 C -0.064 4.064 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.253 0.747 38 H 0.184 0.816 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.113 0.887 43 H 0.072 0.928 44 H 0.164 0.836 45 H 0.128 0.872 46 H 0.088 0.912 47 H 0.104 0.896 48 H 0.029 0.971 49 H 0.057 0.943 50 H 0.083 0.917 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -9.378 -1.704 -11.908 15.253 hybrid contribution 1.400 0.395 -0.675 1.604 sum -7.978 -1.309 -12.584 14.957 Atomic orbital electron populations 1.21649 0.93161 1.02471 1.02716 1.22011 0.97698 0.96617 1.01840 1.21670 0.76213 0.97423 1.04322 1.47336 1.07234 1.77936 1.04886 1.17995 0.81053 0.79171 0.82608 1.90656 1.68127 1.43159 1.39724 1.21657 1.02612 1.05985 0.96286 1.26874 0.89036 0.84214 1.02280 1.68152 1.11583 1.13291 1.27876 1.23471 0.97179 0.94251 0.87478 1.20656 0.99589 1.01240 0.96743 1.21203 0.95795 0.87869 0.91020 1.87941 1.61747 1.43686 1.40019 1.22961 1.00078 0.99749 0.84361 1.21646 0.92132 0.92428 0.97203 1.22187 0.90134 0.99191 0.84173 0.85936 1.23736 1.00274 0.96551 0.99532 1.21996 0.85536 0.99742 0.90557 1.44832 1.02117 1.54578 1.30817 1.18847 0.80837 1.24917 1.10042 0.92073 1.25231 1.00927 0.99494 0.97534 1.69927 1.33424 1.36341 1.18698 0.85312 0.81409 0.76588 0.77337 1.21620 1.21883 1.20492 1.23073 0.91812 0.95691 0.95779 0.90960 0.92429 0.92104 0.94224 0.91177 0.87418 0.90860 0.74706 0.81612 0.90799 0.90339 0.92709 0.88655 0.92817 0.83626 0.87170 0.91181 0.89552 0.97077 0.94262 0.91695 0.95485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.91 71.98 0.71 -1.51 16 2 C -0.14 -3.03 6.20 30.59 0.19 -2.84 16 3 C 0.12 2.82 5.61 86.38 0.48 3.30 16 4 N -0.64 -19.16 2.51 -794.65 -2.00 -21.16 16 5 C 0.60 21.39 6.08 86.78 0.53 21.92 16 6 O -0.54 -20.87 16.76 -3.89 -0.07 -20.93 16 7 C -0.26 -9.71 4.83 -20.00 -0.10 -9.81 16 8 C 0.13 5.47 5.74 85.04 0.49 5.96 16 9 N -0.50 -21.84 9.93 -274.55 -2.73 -24.57 16 10 C 0.13 4.77 10.85 84.69 0.92 5.69 16 11 C -0.18 -5.69 5.52 -19.81 -0.11 -5.80 16 12 C 0.12 2.79 6.08 71.23 0.43 3.22 16 13 O -0.41 -10.44 10.69 -148.98 -1.59 -12.03 16 14 C 0.02 0.39 11.01 113.37 1.25 1.64 16 15 C -0.01 -0.27 9.39 22.73 0.21 -0.06 16 16 C 0.15 4.65 3.29 46.18 0.15 4.80 16 17 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 18 C -0.16 -5.31 5.16 32.06 0.17 -5.15 16 19 C 0.15 6.47 5.58 86.93 0.49 6.96 16 20 N -0.60 -28.52 2.06 -757.40 -1.56 -30.08 16 21 C -0.22 -11.72 9.55 84.03 0.80 -10.91 16 22 H 0.06 3.35 7.83 -2.91 -0.02 3.33 16 23 C -0.04 -2.08 5.49 84.86 0.47 -1.61 16 24 N -0.94 -52.61 10.09 21.65 0.22 -52.39 16 25 Si 0.96 45.38 29.55 68.60 2.03 47.41 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 29 C 0.06 2.48 5.39 86.73 0.47 2.95 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.52 7.30 -2.39 -0.02 1.50 16 35 H 0.11 1.84 8.02 -2.39 -0.02 1.82 16 36 H 0.07 1.73 7.66 -2.39 -0.02 1.71 16 37 H 0.24 9.76 0.24 -47.06 -0.01 9.75 16 38 H 0.17 5.13 8.06 -2.91 -0.02 5.11 16 39 H 0.07 1.49 8.09 -2.39 -0.02 1.47 16 40 H 0.08 1.56 8.09 -2.39 -0.02 1.54 16 41 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.15 4.47 7.81 -2.91 -0.02 4.45 16 45 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 46 H 0.07 2.49 6.32 -2.38 -0.02 2.47 16 47 H 0.09 4.48 5.87 -2.39 -0.01 4.47 16 48 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 50 H 0.07 2.83 2.51 -51.15 -0.13 2.70 16 51 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -68.39 394.27 2.66 -65.74 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.80 Total: 29.26 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 7.55 Total: 18.76 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -6.07 Total: -128.20 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -1.66 Total: -32.96 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -68.39 2.66 -65.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713717734.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.978 kcal (2) G-P(sol) polarization free energy of solvation -68.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds