Wall clock time and date at job start Wed Apr 1 2020 05:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47158 * 2 1 4 4 N 1.46501 * 109.47284 * 180.02562 * 3 2 1 5 5 C 1.34774 * 120.00237 * 268.72599 * 4 3 2 6 6 O 1.21515 * 120.00070 * 5.46529 * 5 4 3 7 7 C 1.48164 * 120.00392 * 185.47079 * 5 4 3 8 8 C 1.39613 * 120.88930 * 322.59432 * 7 5 4 9 9 C 1.38848 * 118.95191 * 179.97438 * 8 7 5 10 10 O 1.35678 * 119.62320 * 180.02562 * 9 8 7 11 11 N 1.32198 * 120.75222 * 359.97438 * 9 8 7 12 12 C 1.31885 * 121.97416 * 0.02562 * 11 9 8 13 13 C 1.50701 * 119.51121 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47326 * 305.00152 * 13 12 11 15 15 C 1.38023 * 120.97232 * 359.73915 * 12 11 9 16 16 C 1.46500 * 119.99957 * 88.71978 * 4 3 2 17 17 H 1.09001 * 110.88720 * 246.59348 * 16 4 3 18 18 C 1.55160 * 111.00565 * 10.47394 * 16 4 3 19 19 C 1.54319 * 102.94120 * 153.57889 * 18 16 4 20 20 N 1.47022 * 107.27504 * 337.80554 * 19 18 16 21 21 C 1.36937 * 125.65109 * 178.99280 * 20 19 18 22 22 H 1.07999 * 119.99772 * 179.97438 * 21 20 19 23 23 C 1.38811 * 120.00073 * 359.97239 * 21 20 19 24 24 N 1.31619 * 119.99649 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99863 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47298 * 60.00036 * 25 23 21 27 27 H 1.48510 * 109.46922 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47237 * 299.99660 * 25 23 21 29 29 C 1.47425 * 108.70020 * 358.94124 * 20 19 18 30 30 H 1.08993 * 109.47094 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46486 * 299.99829 * 1 2 3 32 32 H 1.08999 * 109.47445 * 59.99005 * 1 2 3 33 33 H 1.08994 * 109.47662 * 120.00542 * 2 1 3 34 34 H 1.09002 * 109.46486 * 240.00170 * 2 1 3 35 35 H 1.09001 * 109.47726 * 300.00034 * 3 2 1 36 36 H 1.09002 * 109.47283 * 60.00658 * 3 2 1 37 37 H 1.08003 * 120.52448 * 359.95810 * 8 7 5 38 38 H 0.96702 * 114.00869 * 86.39428 * 10 9 8 39 39 H 1.08999 * 109.46825 * 65.00112 * 13 12 11 40 40 H 1.09001 * 109.47005 * 185.00279 * 13 12 11 41 41 H 1.08998 * 109.47196 * 179.97438 * 14 13 12 42 42 H 1.09004 * 109.47053 * 300.00506 * 14 13 12 43 43 H 1.09001 * 109.46975 * 60.00109 * 14 13 12 44 44 H 1.08000 * 120.43259 * 180.28641 * 15 12 11 45 45 H 1.09005 * 110.71981 * 271.94103 * 18 16 4 46 46 H 1.08997 * 110.71697 * 35.21256 * 18 16 4 47 47 H 1.08990 * 109.88615 * 97.22782 * 19 18 16 48 48 H 1.09004 * 109.88092 * 218.23887 * 19 18 16 49 49 H 0.97002 * 120.00015 * 180.02562 * 24 23 21 50 50 H 1.09001 * 110.37261 * 265.29077 * 29 20 19 51 51 H 1.09005 * 110.36323 * 142.96290 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1794 1.4683 1.1660 6 8 3.5765 1.3913 2.2182 7 6 5.6560 1.5907 1.1656 8 6 6.4282 0.9492 0.1953 9 6 7.8088 1.0917 0.2327 10 8 8.5723 0.4747 -0.7039 11 7 8.3878 1.8226 1.1698 12 6 7.6908 2.4427 2.1020 13 6 8.4082 3.2620 3.1437 14 6 9.4570 2.3941 3.8419 15 6 6.3136 2.3570 2.1341 16 6 4.2370 1.4144 -1.2693 17 1 4.7816 0.4770 -1.3831 18 6 3.2810 1.6511 -2.4683 19 6 4.2130 2.2565 -3.5391 20 7 5.3714 2.8279 -2.8369 21 6 6.4406 3.4436 -3.4309 22 1 7.2451 3.8326 -2.8244 23 6 6.4904 3.5678 -4.8126 24 7 5.5097 3.0942 -5.5516 25 14 7.9493 4.4071 -5.6228 26 1 9.1943 3.6722 -5.2836 27 1 7.7623 4.4115 -7.0961 28 1 8.0508 5.8053 -5.1331 29 6 5.1906 2.6294 -1.3873 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 1.8934 -0.5139 0.8899 34 1 1.8932 -0.5138 -0.8901 35 1 1.6767 1.9564 -0.8900 36 1 1.6768 1.9563 0.8901 37 1 5.9590 0.3513 -0.5721 38 1 8.6885 0.9863 -1.5163 39 1 8.8985 4.1096 2.6649 40 1 7.6897 3.6253 3.8784 41 1 9.9762 2.9868 4.5950 42 1 8.9667 1.5463 4.3206 43 1 10.1755 2.0308 3.1072 44 1 5.7512 2.8722 2.8988 45 1 2.8563 0.7089 -2.8148 46 1 2.4932 2.3550 -2.2002 47 1 4.5432 1.4776 -4.2263 48 1 3.6877 3.0374 -4.0889 49 1 5.5446 3.1807 -6.5172 50 1 4.7373 3.5125 -0.9370 51 1 6.1467 2.4088 -0.9126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713719234.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:48 Heat of formation + Delta-G solvation = 6.791135 kcal Electronic energy + Delta-G solvation = -32565.685266 eV Core-core repulsion = 28467.132971 eV Total energy + Delta-G solvation = -4098.552294 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.20830 -39.59368 -37.75847 -37.05056 -35.49425 -34.31100 -33.20178 -32.14038 -31.80824 -29.74027 -29.25868 -27.58176 -26.53515 -24.82347 -24.59019 -23.54213 -22.26541 -21.78823 -20.98020 -20.10671 -19.30682 -18.21214 -17.31938 -17.06783 -16.60375 -16.14157 -15.90715 -15.36994 -15.03541 -14.95822 -14.64790 -14.46753 -14.28121 -14.02220 -13.91141 -13.39450 -13.16701 -12.93508 -12.85838 -12.64875 -12.27147 -12.12963 -12.03235 -11.80114 -11.71995 -11.66728 -11.43117 -11.41064 -11.12176 -11.07953 -10.98766 -10.86153 -10.66636 -10.42052 -10.24469 -10.22784 -10.07646 -9.88567 -9.55384 -9.24583 -8.77330 -8.60336 -8.49384 -6.99853 -5.86671 -3.21152 0.82791 1.04154 2.70593 2.93377 3.31641 3.37380 3.37867 3.56974 3.81180 4.23181 4.40516 4.48698 4.79873 4.89295 4.94516 4.97011 4.99977 5.08260 5.15368 5.23562 5.25203 5.28546 5.38886 5.44894 5.50071 5.51364 5.56009 5.63628 5.72745 5.74417 5.77133 5.81885 5.91912 5.95374 6.00749 6.05806 6.11012 6.13549 6.20228 6.20987 6.30710 6.36141 6.48062 6.54121 6.64151 7.37179 7.38420 7.42177 7.60591 7.65731 7.99293 8.07363 8.11572 9.05189 9.65089 10.29116 11.24532 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006842 B = 0.005453 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4091.541882 B = 5133.326184 C = 8504.377928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.108 3.892 4 N -0.591 5.591 5 C 0.565 3.435 6 O -0.535 6.535 7 C -0.072 4.072 8 C -0.146 4.146 9 C 0.314 3.686 10 O -0.482 6.482 11 N -0.483 5.483 12 C 0.143 3.857 13 C -0.071 4.071 14 C -0.144 4.144 15 C -0.129 4.129 16 C 0.109 3.891 17 H 0.090 0.910 18 C -0.149 4.149 19 C 0.178 3.822 20 N -0.599 5.599 21 C -0.235 4.235 22 H 0.076 0.924 23 C -0.001 4.001 24 N -0.918 5.918 25 Si 0.911 3.089 26 H -0.283 1.283 27 H -0.289 1.289 28 H -0.285 1.285 29 C 0.117 3.883 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.156 0.844 38 H 0.410 0.590 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.066 0.934 44 H 0.143 0.857 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.052 0.948 48 H 0.048 0.952 49 H 0.255 0.745 50 H 0.024 0.976 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.991 -3.869 12.611 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C -0.014 4.014 4 N -0.322 5.322 5 C 0.353 3.647 6 O -0.413 6.413 7 C -0.083 4.083 8 C -0.168 4.168 9 C 0.135 3.865 10 O -0.290 6.290 11 N -0.203 5.203 12 C 0.005 3.995 13 C -0.109 4.109 14 C -0.201 4.201 15 C -0.150 4.150 16 C 0.006 3.994 17 H 0.107 0.893 18 C -0.187 4.187 19 C 0.053 3.947 20 N -0.325 5.325 21 C -0.363 4.363 22 H 0.094 0.906 23 C -0.198 4.198 24 N -0.565 5.565 25 Si 0.741 3.259 26 H -0.209 1.209 27 H -0.215 1.215 28 H -0.211 1.211 29 C -0.010 4.010 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.173 0.827 38 H 0.269 0.731 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.161 0.839 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.065 0.935 50 H 0.041 0.959 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.330 -4.257 13.238 14.099 hybrid contribution -0.181 0.693 -1.160 1.364 sum -2.511 -3.564 12.077 12.840 Atomic orbital electron populations 1.21678 0.95198 1.01764 1.01909 1.21868 0.96066 0.97167 1.02550 1.21701 0.78611 0.97392 1.03701 1.47896 1.06812 1.71864 1.05662 1.18145 0.86462 0.76451 0.83644 1.90750 1.69500 1.50117 1.30916 1.20073 0.93710 0.98606 0.95899 1.22712 0.94071 1.00736 0.99246 1.18852 0.86356 0.91224 0.90088 1.84692 1.71807 1.44408 1.28127 1.66719 1.42490 1.07348 1.03737 1.20854 0.89894 0.94956 0.93809 1.20489 0.98250 0.97337 0.94802 1.21674 0.98682 0.99464 1.00315 1.21918 0.94844 0.99460 0.98785 1.22801 0.94555 0.99709 0.82339 0.89274 1.23283 0.98483 1.01126 0.95817 1.21187 0.85932 0.96938 0.90662 1.44386 1.21314 1.68108 0.98709 1.18930 0.96934 1.30656 0.89760 0.90600 1.24784 0.98258 1.00713 0.96039 1.69923 1.31777 1.50067 1.04727 0.86219 0.81775 0.79382 0.78498 1.20942 1.21486 1.21132 1.22431 0.96713 0.93515 0.88341 0.92614 0.92644 0.92484 0.91731 0.91629 0.89238 0.90084 0.82651 0.73103 0.89718 0.90106 0.92377 0.92926 0.91488 0.83922 0.91222 0.91141 0.93003 0.93432 0.93485 0.95879 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.14 -1.57 6.26 -26.73 -0.17 -1.73 16 3 C 0.11 1.38 4.94 -4.04 -0.02 1.36 16 4 N -0.59 -8.74 2.71 -164.65 -0.45 -9.18 16 5 C 0.57 9.07 7.26 -12.18 -0.09 8.98 16 6 O -0.54 -9.56 16.54 5.35 0.09 -9.48 16 7 C -0.07 -1.11 4.44 -104.68 -0.47 -1.58 16 8 C -0.15 -2.25 5.89 -38.84 -0.23 -2.48 16 9 C 0.31 5.01 7.38 -17.17 -0.13 4.89 16 10 O -0.48 -7.34 13.56 -18.74 -0.25 -7.59 16 11 N -0.48 -7.63 9.87 -9.60 -0.09 -7.72 16 12 C 0.14 1.98 6.18 -82.65 -0.51 1.47 16 13 C -0.07 -0.75 6.33 -27.88 -0.18 -0.92 16 14 C -0.14 -1.43 9.77 37.15 0.36 -1.07 16 15 C -0.13 -1.83 9.34 -39.03 -0.36 -2.20 16 16 C 0.11 1.73 2.85 -65.78 -0.19 1.55 16 17 H 0.09 1.38 5.58 -51.93 -0.29 1.09 16 18 C -0.15 -2.41 5.58 -24.90 -0.14 -2.55 16 19 C 0.18 3.87 5.37 -3.07 -0.02 3.85 16 20 N -0.60 -13.79 3.39 -170.07 -0.58 -14.37 16 21 C -0.23 -6.01 10.28 -15.06 -0.15 -6.16 16 22 H 0.08 1.89 7.83 -52.49 -0.41 1.48 16 23 C 0.00 -0.02 5.49 -17.43 -0.10 -0.12 16 24 N -0.92 -25.10 10.31 55.49 0.57 -24.53 16 25 Si 0.91 20.88 29.55 -169.99 -5.02 15.86 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 C 0.12 2.22 5.35 -2.53 -0.01 2.20 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.08 5.34 -51.93 -0.28 0.80 16 36 H 0.08 1.07 7.47 -51.93 -0.39 0.68 16 37 H 0.16 2.33 4.71 -52.48 -0.25 2.08 16 38 H 0.41 5.19 9.06 45.56 0.41 5.61 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.69 7.86 -51.93 -0.41 0.28 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.76 7.94 -51.93 -0.41 0.35 16 44 H 0.14 1.79 7.94 -52.49 -0.42 1.37 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.07 1.08 5.95 -51.93 -0.31 0.77 16 47 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 48 H 0.05 1.17 7.50 -51.93 -0.39 0.78 16 49 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 50 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.06 1.04 3.99 -51.93 -0.21 0.84 16 LS Contribution 398.16 15.07 6.00 6.00 Total: -1.00 -30.46 398.16 -8.85 -39.31 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.09 Total: 7.22 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -2.02 Total: 4.49 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.55 Total: -55.80 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.17 Total: -17.07 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.46 -8.85 -39.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713719234.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.098 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds