Wall clock time and date at job start Wed Apr 1 2020 05:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47158 * 2 1 4 4 N 1.46501 * 109.47284 * 180.02562 * 3 2 1 5 5 C 1.34774 * 120.00237 * 268.72599 * 4 3 2 6 6 O 1.21515 * 120.00070 * 5.46529 * 5 4 3 7 7 C 1.48164 * 120.00392 * 185.47079 * 5 4 3 8 8 C 1.39613 * 120.88930 * 322.59432 * 7 5 4 9 9 C 1.38848 * 118.95191 * 179.97438 * 8 7 5 10 10 O 1.35678 * 119.62320 * 180.02562 * 9 8 7 11 11 N 1.32198 * 120.75222 * 359.97438 * 9 8 7 12 12 C 1.31885 * 121.97416 * 0.02562 * 11 9 8 13 13 C 1.50701 * 119.51121 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47326 * 305.00152 * 13 12 11 15 15 C 1.38023 * 120.97232 * 359.73915 * 12 11 9 16 16 C 1.46500 * 119.99957 * 88.71978 * 4 3 2 17 17 H 1.09001 * 110.88720 * 246.59348 * 16 4 3 18 18 C 1.55160 * 111.00565 * 10.47394 * 16 4 3 19 19 C 1.54319 * 102.94120 * 153.57889 * 18 16 4 20 20 N 1.47022 * 107.27504 * 337.80554 * 19 18 16 21 21 C 1.36937 * 125.65109 * 178.99280 * 20 19 18 22 22 H 1.07999 * 119.99772 * 179.97438 * 21 20 19 23 23 C 1.38811 * 120.00073 * 359.97239 * 21 20 19 24 24 N 1.31619 * 119.99649 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99863 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47298 * 60.00036 * 25 23 21 27 27 H 1.48510 * 109.46922 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47237 * 299.99660 * 25 23 21 29 29 C 1.47425 * 108.70020 * 358.94124 * 20 19 18 30 30 H 1.08993 * 109.47094 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46486 * 299.99829 * 1 2 3 32 32 H 1.08999 * 109.47445 * 59.99005 * 1 2 3 33 33 H 1.08994 * 109.47662 * 120.00542 * 2 1 3 34 34 H 1.09002 * 109.46486 * 240.00170 * 2 1 3 35 35 H 1.09001 * 109.47726 * 300.00034 * 3 2 1 36 36 H 1.09002 * 109.47283 * 60.00658 * 3 2 1 37 37 H 1.08003 * 120.52448 * 359.95810 * 8 7 5 38 38 H 0.96702 * 114.00869 * 86.39428 * 10 9 8 39 39 H 1.08999 * 109.46825 * 65.00112 * 13 12 11 40 40 H 1.09001 * 109.47005 * 185.00279 * 13 12 11 41 41 H 1.08998 * 109.47196 * 179.97438 * 14 13 12 42 42 H 1.09004 * 109.47053 * 300.00506 * 14 13 12 43 43 H 1.09001 * 109.46975 * 60.00109 * 14 13 12 44 44 H 1.08000 * 120.43259 * 180.28641 * 15 12 11 45 45 H 1.09005 * 110.71981 * 271.94103 * 18 16 4 46 46 H 1.08997 * 110.71697 * 35.21256 * 18 16 4 47 47 H 1.08990 * 109.88615 * 97.22782 * 19 18 16 48 48 H 1.09004 * 109.88092 * 218.23887 * 19 18 16 49 49 H 0.97002 * 120.00015 * 180.02562 * 24 23 21 50 50 H 1.09001 * 110.37261 * 265.29077 * 29 20 19 51 51 H 1.09005 * 110.36323 * 142.96290 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1794 1.4683 1.1660 6 8 3.5765 1.3913 2.2182 7 6 5.6560 1.5907 1.1656 8 6 6.4282 0.9492 0.1953 9 6 7.8088 1.0917 0.2327 10 8 8.5723 0.4747 -0.7039 11 7 8.3878 1.8226 1.1698 12 6 7.6908 2.4427 2.1020 13 6 8.4082 3.2620 3.1437 14 6 9.4570 2.3941 3.8419 15 6 6.3136 2.3570 2.1341 16 6 4.2370 1.4144 -1.2693 17 1 4.7816 0.4770 -1.3831 18 6 3.2810 1.6511 -2.4683 19 6 4.2130 2.2565 -3.5391 20 7 5.3714 2.8279 -2.8369 21 6 6.4406 3.4436 -3.4309 22 1 7.2451 3.8326 -2.8244 23 6 6.4904 3.5678 -4.8126 24 7 5.5097 3.0942 -5.5516 25 14 7.9493 4.4071 -5.6228 26 1 9.1943 3.6722 -5.2836 27 1 7.7623 4.4115 -7.0961 28 1 8.0508 5.8053 -5.1331 29 6 5.1906 2.6294 -1.3873 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 1.8934 -0.5139 0.8899 34 1 1.8932 -0.5138 -0.8901 35 1 1.6767 1.9564 -0.8900 36 1 1.6768 1.9563 0.8901 37 1 5.9590 0.3513 -0.5721 38 1 8.6885 0.9863 -1.5163 39 1 8.8985 4.1096 2.6649 40 1 7.6897 3.6253 3.8784 41 1 9.9762 2.9868 4.5950 42 1 8.9667 1.5463 4.3206 43 1 10.1755 2.0308 3.1072 44 1 5.7512 2.8722 2.8988 45 1 2.8563 0.7089 -2.8148 46 1 2.4932 2.3550 -2.2002 47 1 4.5432 1.4776 -4.2263 48 1 3.6877 3.0374 -4.0889 49 1 5.5446 3.1807 -6.5172 50 1 4.7373 3.5125 -0.9370 51 1 6.1467 2.4088 -0.9126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713719234.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:47 Heat of formation + Delta-G solvation = -13.641671 kcal Electronic energy + Delta-G solvation = -32566.571299 eV Core-core repulsion = 28467.132971 eV Total energy + Delta-G solvation = -4099.438327 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.43183 -40.81038 -39.22192 -38.22830 -36.79800 -35.47730 -34.40456 -33.60093 -33.04689 -31.12639 -30.64416 -28.94772 -27.71217 -26.53970 -25.73901 -24.65352 -23.36085 -22.84513 -22.39640 -21.64232 -20.48445 -19.43981 -19.02744 -18.30194 -17.84482 -17.37701 -17.20969 -16.70320 -16.56220 -16.21061 -15.87202 -15.69260 -15.51282 -15.26065 -14.96992 -14.56162 -14.38352 -14.30393 -14.18178 -13.92964 -13.87604 -13.21648 -13.07411 -12.98732 -12.91022 -12.77411 -12.72727 -12.67894 -12.37377 -12.34711 -12.25045 -12.08820 -12.01410 -11.88816 -11.78779 -11.74154 -11.47785 -11.38402 -10.81549 -10.68972 -10.42779 -9.82984 -9.71830 -8.89091 -7.85535 -5.20922 -0.36703 -0.11030 1.46170 1.48893 1.49877 1.55769 1.72289 2.42166 2.49077 2.66310 3.03395 3.33889 3.41369 3.44132 3.70421 3.79759 3.85274 3.93087 3.98004 4.04964 4.10981 4.16973 4.31015 4.36911 4.40471 4.42726 4.49940 4.55508 4.63513 4.69352 4.73548 4.79705 4.82998 4.89287 4.90292 4.97808 5.06294 5.08291 5.19696 5.20513 5.23776 5.31536 5.33894 5.43748 5.47556 5.50164 5.63742 5.75636 6.11471 6.20091 6.47577 6.84569 6.85837 7.09455 7.74663 8.37770 9.23973 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006842 B = 0.005453 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4091.541882 B = 5133.326184 C = 8504.377928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.104 3.896 4 N -0.586 5.586 5 C 0.566 3.434 6 O -0.554 6.554 7 C -0.082 4.082 8 C -0.153 4.153 9 C 0.301 3.699 10 O -0.489 6.489 11 N -0.500 5.500 12 C 0.143 3.857 13 C -0.071 4.071 14 C -0.140 4.140 15 C -0.131 4.131 16 C 0.126 3.874 17 H 0.099 0.901 18 C -0.131 4.131 19 C 0.185 3.815 20 N -0.615 5.615 21 C -0.240 4.240 22 H 0.078 0.922 23 C -0.052 4.052 24 N -0.944 5.944 25 Si 0.969 3.031 26 H -0.273 1.273 27 H -0.296 1.296 28 H -0.284 1.284 29 C 0.120 3.880 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.158 0.842 38 H 0.417 0.583 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.047 0.953 44 H 0.161 0.839 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.024 0.976 48 H 0.012 0.988 49 H 0.248 0.752 50 H 0.011 0.989 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.301 -3.836 14.131 15.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C -0.017 4.017 4 N -0.316 5.316 5 C 0.354 3.646 6 O -0.433 6.433 7 C -0.093 4.093 8 C -0.174 4.174 9 C 0.122 3.878 10 O -0.299 6.299 11 N -0.220 5.220 12 C 0.005 3.995 13 C -0.109 4.109 14 C -0.197 4.197 15 C -0.151 4.151 16 C 0.023 3.977 17 H 0.116 0.884 18 C -0.170 4.170 19 C 0.060 3.940 20 N -0.342 5.342 21 C -0.369 4.369 22 H 0.095 0.905 23 C -0.246 4.246 24 N -0.592 5.592 25 Si 0.797 3.203 26 H -0.199 1.199 27 H -0.222 1.222 28 H -0.210 1.210 29 C -0.006 4.006 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.175 0.825 38 H 0.278 0.722 39 H 0.109 0.891 40 H 0.125 0.875 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.178 0.822 45 H 0.115 0.885 46 H 0.102 0.898 47 H 0.042 0.958 48 H 0.030 0.970 49 H 0.057 0.943 50 H 0.029 0.971 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.645 -4.233 14.780 15.600 hybrid contribution -0.066 0.721 -1.535 1.697 sum -2.711 -3.512 13.245 13.968 Atomic orbital electron populations 1.21660 0.93473 1.02596 1.02460 1.21806 0.97497 0.95759 1.01957 1.21901 0.77174 0.98614 1.04050 1.47892 1.07667 1.71293 1.04797 1.18220 0.86650 0.76110 0.83589 1.90739 1.69920 1.51203 1.31466 1.20182 0.93538 0.99127 0.96409 1.22676 0.93945 1.01202 0.99589 1.19022 0.86670 0.91625 0.90443 1.84663 1.71792 1.44853 1.28557 1.66794 1.43072 1.07875 1.04266 1.21452 0.90115 0.94263 0.93675 1.20659 0.98831 0.96961 0.94464 1.21643 0.98188 0.99637 1.00280 1.22194 0.95153 0.99052 0.98719 1.22534 0.93850 0.98623 0.82732 0.88355 1.23138 0.97540 1.02358 0.93920 1.20944 0.86184 0.95099 0.91798 1.44597 1.21110 1.67915 1.00578 1.19225 0.97562 1.30028 0.90069 0.90459 1.25470 1.00523 1.01896 0.96681 1.70118 1.33307 1.51521 1.04279 0.85309 0.79536 0.78435 0.76988 1.19909 1.22217 1.21033 1.22479 0.97868 0.94301 0.85987 0.91682 0.92512 0.91540 0.93219 0.91297 0.88168 0.90395 0.82536 0.72192 0.89132 0.87543 0.90000 0.93235 0.93353 0.82184 0.88459 0.89780 0.95800 0.96973 0.94290 0.97101 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 71.98 0.71 -1.60 16 2 C -0.13 -2.70 6.26 30.59 0.19 -2.51 16 3 C 0.10 2.43 4.94 86.38 0.43 2.86 16 4 N -0.59 -16.38 2.71 -793.14 -2.15 -18.53 16 5 C 0.57 17.43 7.26 86.88 0.63 18.06 16 6 O -0.55 -19.06 16.54 -3.76 -0.06 -19.12 16 7 C -0.08 -2.43 4.44 -19.90 -0.09 -2.52 16 8 C -0.15 -4.62 5.89 22.75 0.13 -4.49 16 9 C 0.30 9.51 7.38 84.78 0.63 10.14 16 10 O -0.49 -14.87 13.56 -89.96 -1.22 -16.09 16 11 N -0.50 -15.45 9.87 -297.17 -2.93 -18.38 16 12 C 0.14 3.77 6.18 42.50 0.26 4.04 16 13 C -0.07 -1.35 6.33 29.85 0.19 -1.16 16 14 C -0.14 -2.51 9.77 71.98 0.70 -1.81 16 15 C -0.13 -3.50 9.34 22.63 0.21 -3.29 16 16 C 0.13 3.84 2.85 46.39 0.13 3.97 16 17 H 0.10 2.90 5.58 -2.39 -0.01 2.89 16 18 C -0.13 -4.06 5.58 31.78 0.18 -3.88 16 19 C 0.18 8.14 5.37 86.73 0.47 8.61 16 20 N -0.62 -28.59 3.39 -691.99 -2.35 -30.94 16 21 C -0.24 -12.39 10.28 84.03 0.86 -11.53 16 22 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 23 C -0.05 -2.74 5.49 84.86 0.47 -2.28 16 24 N -0.94 -52.90 10.31 21.65 0.22 -52.68 16 25 Si 0.97 43.30 29.55 68.60 2.03 45.32 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 28 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 29 C 0.12 4.48 5.35 86.86 0.47 4.95 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 35 H 0.10 2.14 5.34 -2.39 -0.01 2.13 16 36 H 0.08 1.92 7.47 -2.39 -0.02 1.90 16 37 H 0.16 4.59 4.71 -2.91 -0.01 4.58 16 38 H 0.42 10.67 9.06 -74.06 -0.67 10.00 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.11 1.47 7.86 -2.39 -0.02 1.45 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.05 1.05 7.94 -2.39 -0.02 1.03 16 44 H 0.16 3.66 7.94 -2.91 -0.02 3.63 16 45 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 46 H 0.08 2.40 5.95 -2.39 -0.01 2.39 16 47 H 0.02 1.17 7.38 -2.39 -0.02 1.15 16 48 H 0.01 0.61 7.50 -2.38 -0.02 0.59 16 49 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 50 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.06 2.27 3.99 -2.38 -0.01 2.26 16 Total: -1.00 -66.27 398.16 0.39 -65.88 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.28 Total: 26.98 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 6.57 Total: 17.55 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -7.21 Total: -120.53 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -1.28 Total: -35.21 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -66.27 0.39 -65.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713719234.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.241 kcal (2) G-P(sol) polarization free energy of solvation -66.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds