Wall clock time and date at job start Wed Apr 1 2020 05:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47359 * 2 1 4 4 N 1.46498 * 109.47423 * 179.97438 * 3 2 1 5 5 C 1.34777 * 119.99809 * 98.81198 * 4 3 2 6 6 O 1.21515 * 120.00155 * 186.95223 * 5 4 3 7 7 C 1.48165 * 120.00047 * 7.22601 * 5 4 3 8 8 C 1.39610 * 120.89157 * 330.37450 * 7 5 4 9 9 C 1.38854 * 118.94803 * 179.72804 * 8 7 5 10 10 O 1.35687 * 119.62146 * 180.26971 * 9 8 7 11 11 N 1.32203 * 120.75280 * 0.55286 * 9 8 7 12 12 C 1.31876 * 121.97435 * 359.71517 * 11 9 8 13 13 C 1.50698 * 119.51186 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47130 * 305.02316 * 13 12 11 15 15 C 1.38021 * 120.97500 * 0.02562 * 12 11 9 16 16 C 1.46499 * 120.00403 * 278.81246 * 4 3 2 17 17 H 1.09001 * 110.63727 * 23.99941 * 16 4 3 18 18 C 1.55156 * 110.72088 * 260.85352 * 16 4 3 19 19 C 1.55389 * 101.36559 * 277.04213 * 18 16 4 20 20 N 1.47433 * 104.87287 * 323.01588 * 19 18 16 21 21 C 1.36933 * 125.64377 * 204.09717 * 20 19 18 22 22 H 1.08004 * 119.99524 * 180.02562 * 21 20 19 23 23 C 1.38805 * 120.00467 * 0.04018 * 21 20 19 24 24 N 1.31618 * 120.00283 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00080 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47154 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47243 * 120.00201 * 25 23 21 28 28 H 1.48505 * 109.47282 * 240.00562 * 25 23 21 29 29 C 1.47024 * 108.70168 * 24.13374 * 20 19 18 30 30 H 1.09011 * 109.47104 * 59.99557 * 1 2 3 31 31 H 1.08998 * 109.47183 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46872 * 299.99920 * 1 2 3 33 33 H 1.09008 * 109.46935 * 240.00494 * 2 1 3 34 34 H 1.08998 * 109.47394 * 120.00461 * 2 1 3 35 35 H 1.09001 * 109.47199 * 59.99931 * 3 2 1 36 36 H 1.09003 * 109.47629 * 300.00259 * 3 2 1 37 37 H 1.08003 * 120.52661 * 359.96289 * 8 7 5 38 38 H 0.96699 * 113.99725 * 270.27555 * 10 9 8 39 39 H 1.09001 * 109.47318 * 65.02224 * 13 12 11 40 40 H 1.08998 * 109.47196 * 185.02444 * 13 12 11 41 41 H 1.08998 * 109.46976 * 59.99994 * 14 13 12 42 42 H 1.09000 * 109.47276 * 180.02562 * 14 13 12 43 43 H 1.09001 * 109.46945 * 300.00137 * 14 13 12 44 44 H 1.07998 * 120.43774 * 179.97438 * 15 12 11 45 45 H 1.08995 * 111.00126 * 35.21139 * 18 16 4 46 46 H 1.09004 * 111.00359 * 159.06401 * 18 16 4 47 47 H 1.09000 * 110.34296 * 204.16962 * 19 18 16 48 48 H 1.08997 * 110.44660 * 81.91724 * 19 18 16 49 49 H 0.97001 * 120.00485 * 179.97438 * 24 23 21 50 50 H 1.08999 * 109.87919 * 239.52209 * 29 20 19 51 51 H 1.09000 * 109.87945 * 118.35801 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1793 1.6211 -1.1526 6 8 5.3878 1.4959 -1.1755 7 6 3.4478 1.9762 -2.3912 8 6 2.1310 1.5578 -2.5908 9 6 1.4818 1.9184 -3.7641 10 8 0.1999 1.5238 -3.9698 11 7 2.1001 2.6371 -4.6854 12 6 3.3449 3.0452 -4.5336 13 6 3.9962 3.8615 -5.6200 14 6 3.9087 3.1060 -6.9476 15 6 4.0604 2.7348 -3.3948 16 6 4.2371 1.2483 1.2546 17 1 3.6219 0.7161 1.9802 18 6 4.7111 2.6091 1.8299 19 6 6.0194 2.8428 1.0249 20 7 6.6221 1.5045 0.8853 21 6 7.9507 1.2453 0.6789 22 1 8.2942 0.2253 0.5892 23 6 8.8561 2.2933 0.5853 24 7 8.4376 3.5363 0.6953 25 14 10.6686 1.9394 0.3044 26 1 10.8788 0.4719 0.2170 27 1 11.1072 2.5782 -0.9624 28 1 11.4608 2.4868 1.4350 29 6 5.5601 0.4947 1.0035 30 1 -0.3634 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 1.6239 0.9662 -1.8428 38 1 0.1182 0.6683 -4.4131 39 1 3.4832 4.8188 -5.7123 40 1 5.0427 4.0330 -5.3679 41 1 2.8623 2.9346 -7.1997 42 1 4.3802 3.6963 -7.7334 43 1 4.4218 2.1487 -6.8553 44 1 5.0795 3.0732 -3.2798 45 1 3.9806 3.3931 1.6308 46 1 4.9174 2.5314 2.8974 47 1 6.6890 3.5049 1.5738 48 1 5.7934 3.2612 0.0441 49 1 9.0703 4.2687 0.6303 50 1 5.7726 -0.1704 1.8405 51 1 5.4901 -0.0795 0.0796 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713719235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:53 Heat of formation + Delta-G solvation = 37.523422 kcal Electronic energy + Delta-G solvation = -32646.572317 eV Core-core repulsion = 28549.352675 eV Total energy + Delta-G solvation = -4097.219642 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.16956 -39.71867 -37.48258 -36.40315 -36.37212 -33.87159 -33.02881 -32.25564 -31.44158 -29.60752 -28.93320 -27.41103 -26.35067 -24.79874 -24.53564 -23.70558 -22.34905 -21.73948 -20.82559 -19.92848 -19.13745 -18.05994 -17.27748 -16.88938 -16.62244 -16.47728 -15.72661 -15.20012 -15.07093 -14.64254 -14.39547 -14.36433 -14.10335 -13.85981 -13.63822 -13.36811 -13.21896 -13.07115 -12.70745 -12.14889 -12.09041 -12.00311 -11.96511 -11.86155 -11.76229 -11.54924 -11.46840 -11.38101 -11.16656 -10.99097 -10.83367 -10.76002 -10.69744 -10.19599 -9.96883 -9.77098 -9.73008 -9.59135 -9.41479 -8.96914 -8.79501 -8.46718 -8.12305 -6.54406 -5.44326 -2.80389 0.76927 0.86871 3.02512 3.14533 3.35008 3.50262 3.55459 3.57821 3.77178 4.31565 4.43373 4.66074 4.68546 4.81385 4.88329 4.91065 5.02954 5.11312 5.14571 5.20721 5.27577 5.38460 5.42115 5.46323 5.48751 5.60713 5.65831 5.66998 5.72100 5.77987 5.80428 5.82493 5.85960 5.96101 5.98709 6.04503 6.13913 6.17068 6.30132 6.37514 6.50466 6.60604 6.67790 6.85193 7.20341 7.27515 7.68494 7.75016 7.78589 7.81530 8.02964 8.56128 8.63237 9.43990 10.05851 10.72619 11.60539 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.004181 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.183576 B = 6695.769239 C = 8966.928458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.149 4.149 3 C 0.076 3.924 4 N -0.599 5.599 5 C 0.530 3.470 6 O -0.440 6.440 7 C -0.054 4.054 8 C -0.198 4.198 9 C 0.303 3.697 10 O -0.481 6.481 11 N -0.492 5.492 12 C 0.151 3.849 13 C -0.074 4.074 14 C -0.143 4.143 15 C -0.124 4.124 16 C 0.134 3.866 17 H 0.083 0.917 18 C -0.162 4.162 19 C 0.162 3.838 20 N -0.578 5.578 21 C -0.195 4.195 22 H 0.072 0.928 23 C -0.017 4.017 24 N -0.925 5.925 25 Si 0.908 3.092 26 H -0.283 1.283 27 H -0.294 1.294 28 H -0.294 1.294 29 C 0.141 3.859 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.174 0.826 38 H 0.398 0.602 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.151 0.849 45 H 0.056 0.944 46 H 0.068 0.932 47 H 0.100 0.900 48 H 0.013 0.987 49 H 0.246 0.754 50 H 0.018 0.982 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.820 -3.865 -7.191 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.188 4.188 3 C -0.047 4.047 4 N -0.334 5.334 5 C 0.314 3.686 6 O -0.309 6.309 7 C -0.065 4.065 8 C -0.219 4.219 9 C 0.124 3.876 10 O -0.287 6.287 11 N -0.212 5.212 12 C 0.013 3.987 13 C -0.112 4.112 14 C -0.200 4.200 15 C -0.145 4.145 16 C 0.031 3.969 17 H 0.101 0.899 18 C -0.202 4.202 19 C 0.037 3.963 20 N -0.303 5.303 21 C -0.325 4.325 22 H 0.090 0.910 23 C -0.211 4.211 24 N -0.576 5.576 25 Si 0.740 3.260 26 H -0.208 1.208 27 H -0.221 1.221 28 H -0.221 1.221 29 C 0.014 3.986 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.191 0.809 38 H 0.255 0.745 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.169 0.831 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.117 0.883 48 H 0.030 0.970 49 H 0.057 0.943 50 H 0.036 0.964 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -18.530 -3.144 -7.674 20.301 hybrid contribution 1.128 -0.821 0.321 1.431 sum -17.402 -3.964 -7.354 19.304 Atomic orbital electron populations 1.21756 0.94908 1.02090 1.02320 1.22041 0.96195 0.97395 1.03146 1.22456 0.80661 0.96989 1.04620 1.47663 1.05546 1.72859 1.07303 1.18208 0.87645 0.79973 0.82743 1.91207 1.11533 1.44550 1.83609 1.20581 0.93348 0.96725 0.95858 1.23276 0.94670 1.04021 0.99910 1.18957 0.84726 0.94313 0.89566 1.84788 1.20410 1.42415 1.81119 1.66708 1.10226 1.11884 1.32363 1.20942 0.88241 0.95237 0.94247 1.20543 1.00423 0.97780 0.92485 1.21665 1.02648 1.00115 0.95596 1.22209 1.02144 0.97606 0.92496 1.22145 0.93415 0.97758 0.83541 0.89925 1.23575 1.00805 0.95413 1.00398 1.21915 0.89444 0.88855 0.96071 1.44148 1.01941 1.00308 1.83864 1.19031 0.81448 0.92458 1.39513 0.91022 1.24653 0.97710 0.95282 1.03465 1.69811 1.31840 0.97453 1.58505 0.86066 0.85605 0.77070 0.77240 1.20816 1.22110 1.22124 1.21394 0.86939 0.92610 0.97611 0.92247 0.92336 0.92328 0.91488 0.90849 0.90640 0.87833 0.80941 0.74504 0.89745 0.89592 0.91740 0.92218 0.92807 0.83082 0.92490 0.91345 0.88260 0.96955 0.94300 0.96424 0.94920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.84 37.16 0.37 -0.72 16 2 C -0.15 -1.38 5.29 -26.73 -0.14 -1.52 16 3 C 0.08 0.85 4.87 -4.04 -0.02 0.83 16 4 N -0.60 -9.40 2.53 -165.01 -0.42 -9.81 16 5 C 0.53 9.76 6.47 -12.18 -0.08 9.68 16 6 O -0.44 -10.38 10.71 5.35 0.06 -10.32 16 7 C -0.05 -0.84 5.62 -104.67 -0.59 -1.43 16 8 C -0.20 -2.47 7.55 -38.84 -0.29 -2.77 16 9 C 0.30 3.76 7.74 -17.16 -0.13 3.63 16 10 O -0.48 -4.74 13.56 -18.76 -0.25 -4.99 16 11 N -0.49 -6.68 9.87 -9.60 -0.09 -6.77 16 12 C 0.15 2.03 6.18 -82.65 -0.51 1.52 16 13 C -0.07 -0.80 6.33 -27.88 -0.18 -0.98 16 14 C -0.14 -1.39 9.77 37.16 0.36 -1.02 16 15 C -0.12 -1.90 9.29 -39.03 -0.36 -2.26 16 16 C 0.13 2.34 3.62 -66.10 -0.24 2.10 16 17 H 0.08 1.18 8.01 -51.93 -0.42 0.77 16 18 C -0.16 -3.13 6.80 -24.32 -0.17 -3.29 16 19 C 0.16 4.11 5.03 -2.26 -0.01 4.10 16 20 N -0.58 -15.37 2.17 -169.76 -0.37 -15.74 16 21 C -0.20 -5.72 10.27 -15.06 -0.15 -5.88 16 22 H 0.07 2.07 7.83 -52.48 -0.41 1.65 16 23 C -0.02 -0.50 5.49 -17.43 -0.10 -0.60 16 24 N -0.93 -28.14 10.09 55.49 0.56 -27.58 16 25 Si 0.91 23.20 29.55 -169.99 -5.02 18.18 16 26 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 29 C 0.14 3.10 5.93 -3.06 -0.02 3.08 16 30 H 0.06 0.41 7.82 -51.92 -0.41 0.00 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.66 7.20 -51.92 -0.37 0.28 16 34 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 35 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 36 H 0.10 1.17 3.91 -52.13 -0.20 0.96 16 37 H 0.17 1.82 2.42 -52.48 -0.13 1.69 16 38 H 0.40 1.98 9.06 45.56 0.41 2.39 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 0.87 7.86 -51.93 -0.41 0.47 16 41 H 0.06 0.65 7.94 -51.93 -0.41 0.24 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.15 2.47 7.86 -52.49 -0.41 2.06 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 47 H 0.10 2.85 5.87 -51.93 -0.30 2.54 16 48 H 0.01 0.35 6.45 -51.93 -0.33 0.01 16 49 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 50 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.03 0.77 6.37 -51.93 -0.33 0.44 16 LS Contribution 394.14 15.07 5.94 5.94 Total: -1.00 -35.59 394.14 -8.95 -44.54 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -7.09 Total: 2.10 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -2.26 Total: 4.47 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -0.32 Total: -59.91 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.20 Total: -15.31 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.59 -8.95 -44.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713719235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.066 kcal (2) G-P(sol) polarization free energy of solvation -35.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds