Wall clock time and date at job start Wed Apr 1 2020 05:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47421 * 2 1 4 4 N 1.46498 * 109.47170 * 180.02562 * 3 2 1 5 5 C 1.34782 * 120.00212 * 83.88179 * 4 3 2 6 6 O 1.21488 * 120.00175 * 183.90288 * 5 4 3 7 7 C 1.48330 * 119.99746 * 3.89699 * 5 4 3 8 8 N 1.31501 * 127.15629 * 354.79527 * 7 5 4 9 9 O 1.21430 * 111.52544 * 179.97438 * 8 7 5 10 10 C 1.33187 * 111.56729 * 359.96196 * 9 8 7 11 11 C 1.35376 * 106.63764 * 359.82735 * 10 9 8 12 12 C 1.50069 * 124.93348 * 179.43909 * 11 10 9 13 13 C 1.53546 * 108.29162 * 344.44907 * 12 11 10 14 14 C 1.53108 * 109.50627 * 48.97690 * 13 12 11 15 15 C 1.50604 * 129.59828 * 180.18637 * 10 9 8 16 16 C 1.46501 * 119.99808 * 263.87209 * 4 3 2 17 17 H 1.08993 * 110.64329 * 359.30820 * 16 4 3 18 18 C 1.55162 * 110.71353 * 122.44595 * 16 4 3 19 19 C 1.55129 * 101.48516 * 153.73864 * 18 16 4 20 20 N 1.47428 * 104.93874 * 323.21879 * 19 18 16 21 21 C 1.36936 * 125.64640 * 203.96742 * 20 19 18 22 22 H 1.07998 * 119.99957 * 165.18353 * 21 20 19 23 23 C 1.38813 * 119.99877 * 345.19065 * 21 20 19 24 24 N 1.31618 * 120.00111 * 350.11571 * 23 21 20 25 25 Si 1.86802 * 119.99719 * 170.11839 * 23 21 20 26 26 H 1.48504 * 109.47214 * 94.95039 * 25 23 21 27 27 H 1.48503 * 109.46925 * 214.94875 * 25 23 21 28 28 H 1.48507 * 109.47292 * 334.94989 * 25 23 21 29 29 C 1.47018 * 108.70399 * 24.00456 * 20 19 18 30 30 H 1.08998 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47183 * 300.00322 * 1 2 3 32 32 H 1.08998 * 109.47063 * 59.99830 * 1 2 3 33 33 H 1.09007 * 109.46824 * 239.99968 * 2 1 3 34 34 H 1.08998 * 109.47063 * 120.00170 * 2 1 3 35 35 H 1.09005 * 109.47335 * 59.99652 * 3 2 1 36 36 H 1.09008 * 109.47117 * 300.00250 * 3 2 1 37 37 H 1.09004 * 109.85900 * 224.64581 * 12 11 10 38 38 H 1.08998 * 109.53519 * 104.06847 * 12 11 10 39 39 H 1.08995 * 109.46964 * 288.96357 * 13 12 11 40 40 H 1.09002 * 109.45877 * 168.98351 * 13 12 11 41 41 H 1.09007 * 109.42858 * 170.05839 * 14 13 12 42 42 H 1.09002 * 109.39049 * 50.19442 * 14 13 12 43 43 H 1.09003 * 109.69515 * 282.91913 * 15 10 9 44 44 H 1.08993 * 109.70008 * 43.47005 * 15 10 9 45 45 H 1.09006 * 110.99944 * 271.93902 * 18 16 4 46 46 H 1.08996 * 111.00913 * 35.78910 * 18 16 4 47 47 H 1.08996 * 110.41611 * 204.29573 * 19 18 16 48 48 H 1.09001 * 110.30036 * 82.08553 * 19 18 16 49 49 H 0.97001 * 120.00023 * 180.02562 * 24 23 21 50 50 H 1.08995 * 109.88509 * 239.52371 * 29 20 19 51 51 H 1.09005 * 109.88352 * 118.36014 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1785 1.3181 -1.1615 6 8 5.3912 1.2467 -1.1556 7 6 3.4388 1.2684 -2.4463 8 7 2.1346 1.2380 -2.6112 9 8 1.8350 1.2005 -3.7874 10 6 2.9143 1.2018 -4.5678 11 6 3.9878 1.2497 -3.7445 12 6 5.4185 1.2564 -4.1975 13 6 5.4610 0.8117 -5.6665 14 6 4.4275 1.6050 -6.4708 15 6 3.0125 1.1676 -6.0702 16 6 4.2380 1.5776 1.2606 17 1 3.5472 1.6797 2.0975 18 6 5.1868 0.3689 1.4763 19 6 6.2812 0.9929 2.3815 20 7 6.4452 2.3711 1.8843 21 6 7.5649 3.1452 2.0332 22 1 7.6861 4.0394 1.4397 23 6 8.5443 2.7806 2.9468 24 7 8.3153 1.8087 3.8043 25 14 10.1873 3.6693 2.9592 26 1 10.1527 4.7598 3.9667 27 1 11.2665 2.7098 3.3054 28 1 10.4490 4.2450 1.6155 29 6 5.2073 2.7771 1.2030 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 6.0032 0.5674 -3.5878 38 1 5.8250 2.2637 -4.1063 39 1 5.2326 -0.2521 -5.7308 40 1 6.4558 0.9948 -6.0727 41 1 4.5765 1.4202 -7.5348 42 1 4.5494 2.6688 -6.2671 43 1 2.8262 0.1547 -6.4275 44 1 2.2804 1.8498 -6.5020 45 1 4.6720 -0.4457 1.9858 46 1 5.6098 0.0306 0.5304 47 1 7.2158 0.4407 2.2838 48 1 5.9529 1.0011 3.4208 49 1 8.9996 1.5541 4.4429 50 1 5.4215 3.0310 0.1650 51 1 4.7672 3.6340 1.7132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713720427.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:38 Heat of formation + Delta-G solvation = 55.664065 kcal Electronic energy + Delta-G solvation = -32371.788197 eV Core-core repulsion = 28275.355192 eV Total energy + Delta-G solvation = -4096.433005 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -45.15274 -40.02999 -37.92359 -36.76648 -35.95204 -33.86529 -32.94842 -31.71893 -31.15204 -30.44482 -29.05740 -27.46822 -26.21459 -25.04054 -24.48693 -23.46767 -22.97312 -21.83762 -20.80454 -20.18184 -20.05001 -18.57126 -17.86114 -17.32629 -16.82160 -16.65763 -15.70095 -15.21303 -14.82133 -14.74432 -14.56437 -14.37591 -14.16952 -14.10037 -13.80762 -13.48641 -13.39635 -13.29693 -12.95042 -12.59403 -12.47406 -12.32621 -12.05077 -11.72385 -11.54680 -11.45083 -11.35452 -11.24690 -11.19801 -10.94746 -10.84839 -10.76774 -10.74560 -10.70514 -10.46195 -10.12769 -9.98757 -9.90353 -9.61117 -9.32611 -9.19474 -8.48686 -8.31221 -6.62878 -5.65279 -2.97399 1.08134 1.63510 2.72051 3.00703 3.32933 3.46025 3.51503 3.54842 3.90257 4.25736 4.46529 4.52082 4.59801 4.73616 4.77643 4.89089 4.95878 5.00816 5.14478 5.19035 5.22663 5.30713 5.38774 5.44729 5.47265 5.51483 5.54650 5.59316 5.67166 5.72081 5.74797 5.78504 5.83190 5.86028 5.89588 5.98105 6.02272 6.07489 6.18611 6.28817 6.33831 6.56419 6.59112 6.67616 6.79646 7.19693 7.52831 7.57331 7.71336 7.87076 7.92993 8.33405 8.38456 9.29716 9.91851 10.61640 11.48611 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.003470 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.280946 B = 8068.321094 C =10074.511718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.101 3.899 4 N -0.590 5.590 5 C 0.588 3.412 6 O -0.489 6.489 7 C -0.007 4.007 8 N -0.332 5.332 9 O 0.115 5.885 10 C -0.043 4.043 11 C -0.150 4.150 12 C -0.048 4.048 13 C -0.123 4.123 14 C -0.119 4.119 15 C -0.033 4.033 16 C 0.136 3.864 17 H 0.093 0.907 18 C -0.157 4.157 19 C 0.182 3.818 20 N -0.593 5.593 21 C -0.222 4.222 22 H 0.072 0.928 23 C -0.007 4.007 24 N -0.918 5.918 25 Si 0.909 3.091 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.133 3.867 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.055 0.945 46 H 0.081 0.919 47 H 0.060 0.940 48 H 0.029 0.971 49 H 0.251 0.749 50 H 0.034 0.966 51 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.333 -4.075 -19.716 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C -0.022 4.022 4 N -0.323 5.323 5 C 0.372 3.628 6 O -0.361 6.361 7 C -0.165 4.165 8 N -0.038 5.038 9 O 0.045 5.955 10 C -0.107 4.107 11 C -0.154 4.154 12 C -0.085 4.085 13 C -0.160 4.160 14 C -0.157 4.157 15 C -0.071 4.071 16 C 0.034 3.966 17 H 0.111 0.889 18 C -0.196 4.196 19 C 0.056 3.944 20 N -0.319 5.319 21 C -0.350 4.350 22 H 0.090 0.910 23 C -0.204 4.204 24 N -0.565 5.565 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.206 1.206 29 C 0.007 3.993 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.074 0.926 46 H 0.099 0.901 47 H 0.078 0.922 48 H 0.047 0.953 49 H 0.062 0.938 50 H 0.052 0.948 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -16.469 -4.096 -18.680 25.237 hybrid contribution 1.308 0.443 -0.033 1.382 sum -15.160 -3.652 -18.712 24.358 Atomic orbital electron populations 1.21642 0.95149 1.01569 1.01859 1.21836 0.96112 0.97008 1.02153 1.21972 0.78994 0.97510 1.03753 1.47874 1.06728 1.71334 1.06335 1.16929 0.86392 0.78253 0.81231 1.90886 1.12016 1.47508 1.85705 1.23245 0.90056 1.06517 0.96649 1.74713 1.15549 1.17858 0.95725 1.84676 1.32960 1.66024 1.11833 1.24066 0.85193 1.04914 0.96574 1.20670 0.98458 1.06118 0.90190 1.20028 0.89466 1.03520 0.95506 1.21713 0.99633 1.00217 0.94473 1.21657 0.92577 1.01070 1.00353 1.20236 0.99187 1.03659 0.84036 1.22264 0.93398 0.98075 0.82905 0.88924 1.23460 0.98083 0.95846 1.02255 1.21275 0.94989 0.84857 0.93268 1.44218 1.10571 1.11694 1.65388 1.18965 0.94647 1.05486 1.15944 0.91043 1.24836 0.99328 0.99341 0.96853 1.69958 1.33344 1.31966 1.21225 0.86149 0.83791 0.78581 0.77550 1.21698 1.21657 1.20604 1.21491 0.87643 0.93276 0.96933 0.92837 0.92766 0.92353 0.92184 0.91881 0.90343 0.88790 0.88910 0.89809 0.91447 0.90572 0.90157 0.90999 0.88900 0.89049 0.92628 0.90073 0.92201 0.95287 0.93843 0.94781 0.96348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.13 -1.58 5.80 -26.74 -0.16 -1.74 16 3 C 0.10 1.33 4.99 -4.05 -0.02 1.31 16 4 N -0.59 -9.84 2.55 -164.95 -0.42 -10.26 16 5 C 0.59 10.57 6.73 -12.11 -0.08 10.49 16 6 O -0.49 -10.46 12.43 5.38 0.07 -10.40 16 7 C -0.01 -0.10 6.68 -82.82 -0.55 -0.66 16 8 N -0.33 -4.42 7.65 33.29 0.25 -4.16 16 9 O 0.11 1.32 11.18 19.20 0.21 1.53 16 10 C -0.04 -0.44 7.38 -35.38 -0.26 -0.70 16 11 C -0.15 -1.93 6.05 -104.91 -0.63 -2.56 16 12 C -0.05 -0.56 5.70 -27.90 -0.16 -0.72 16 13 C -0.12 -0.97 5.92 -26.39 -0.16 -1.12 16 14 C -0.12 -0.71 5.88 -26.45 -0.16 -0.87 16 15 C -0.03 -0.20 6.31 -27.71 -0.17 -0.38 16 16 C 0.14 2.60 3.43 -66.09 -0.23 2.37 16 17 H 0.09 1.59 7.79 -51.93 -0.40 1.19 16 18 C -0.16 -3.28 6.43 -24.46 -0.16 -3.44 16 19 C 0.18 4.68 5.37 -2.41 -0.01 4.66 16 20 N -0.59 -16.28 3.39 -169.94 -0.58 -16.86 16 21 C -0.22 -6.58 10.21 -15.06 -0.15 -6.74 16 22 H 0.07 2.08 7.85 -52.49 -0.41 1.67 16 23 C -0.01 -0.21 5.38 -17.43 -0.09 -0.30 16 24 N -0.92 -27.99 10.90 55.49 0.60 -27.38 16 25 Si 0.91 23.01 29.56 -169.99 -5.03 17.99 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 29 C 0.13 3.09 6.49 -3.07 -0.02 3.07 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.80 7.15 -51.93 -0.37 0.43 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.93 7.83 -51.93 -0.41 0.52 16 36 H 0.09 1.24 5.34 -51.92 -0.28 0.96 16 37 H 0.09 1.27 7.76 -51.93 -0.40 0.87 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 43 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.08 1.83 5.90 -51.93 -0.31 1.52 16 47 H 0.06 1.71 7.29 -51.93 -0.38 1.33 16 48 H 0.03 0.79 7.96 -51.93 -0.41 0.38 16 49 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.03 0.84 6.19 -51.93 -0.32 0.52 16 51 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 392.81 15.07 5.92 5.92 Total: -1.00 -34.02 392.81 -9.93 -43.95 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -8.32 Total: -1.99 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -2.65 Total: 1.66 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.14 Total: -58.66 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.28 Total: -8.87 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.03 Total: 17.99 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.02 -9.93 -43.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713720427.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.617 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds