Wall clock time and date at job start Wed Apr 1 2020 05:17:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52994 * 109.47421 * 2 1
4 4 N 1.46498 * 109.47170 * 180.02562 * 3 2 1
5 5 C 1.34782 * 120.00212 * 83.88179 * 4 3 2
6 6 O 1.21488 * 120.00175 * 183.90288 * 5 4 3
7 7 C 1.48330 * 119.99746 * 3.89699 * 5 4 3
8 8 N 1.31501 * 127.15629 * 354.79527 * 7 5 4
9 9 O 1.21430 * 111.52544 * 179.97438 * 8 7 5
10 10 C 1.33187 * 111.56729 * 359.96196 * 9 8 7
11 11 C 1.35376 * 106.63764 * 359.82735 * 10 9 8
12 12 C 1.50069 * 124.93348 * 179.43909 * 11 10 9
13 13 C 1.53546 * 108.29162 * 344.44907 * 12 11 10
14 14 C 1.53108 * 109.50627 * 48.97690 * 13 12 11
15 15 C 1.50604 * 129.59828 * 180.18637 * 10 9 8
16 16 C 1.46501 * 119.99808 * 263.87209 * 4 3 2
17 17 H 1.08993 * 110.64329 * 359.30820 * 16 4 3
18 18 C 1.55162 * 110.71353 * 122.44595 * 16 4 3
19 19 C 1.55129 * 101.48516 * 153.73864 * 18 16 4
20 20 N 1.47428 * 104.93874 * 323.21879 * 19 18 16
21 21 C 1.36936 * 125.64640 * 203.96742 * 20 19 18
22 22 H 1.07998 * 119.99957 * 165.18353 * 21 20 19
23 23 C 1.38813 * 119.99877 * 345.19065 * 21 20 19
24 24 N 1.31618 * 120.00111 * 350.11571 * 23 21 20
25 25 Si 1.86802 * 119.99719 * 170.11839 * 23 21 20
26 26 H 1.48504 * 109.47214 * 94.95039 * 25 23 21
27 27 H 1.48503 * 109.46925 * 214.94875 * 25 23 21
28 28 H 1.48507 * 109.47292 * 334.94989 * 25 23 21
29 29 C 1.47018 * 108.70399 * 24.00456 * 20 19 18
30 30 H 1.08998 * 109.47170 * 179.97438 * 1 2 3
31 31 H 1.08996 * 109.47183 * 300.00322 * 1 2 3
32 32 H 1.08998 * 109.47063 * 59.99830 * 1 2 3
33 33 H 1.09007 * 109.46824 * 239.99968 * 2 1 3
34 34 H 1.08998 * 109.47063 * 120.00170 * 2 1 3
35 35 H 1.09005 * 109.47335 * 59.99652 * 3 2 1
36 36 H 1.09008 * 109.47117 * 300.00250 * 3 2 1
37 37 H 1.09004 * 109.85900 * 224.64581 * 12 11 10
38 38 H 1.08998 * 109.53519 * 104.06847 * 12 11 10
39 39 H 1.08995 * 109.46964 * 288.96357 * 13 12 11
40 40 H 1.09002 * 109.45877 * 168.98351 * 13 12 11
41 41 H 1.09007 * 109.42858 * 170.05839 * 14 13 12
42 42 H 1.09002 * 109.39049 * 50.19442 * 14 13 12
43 43 H 1.09003 * 109.69515 * 282.91913 * 15 10 9
44 44 H 1.08993 * 109.70008 * 43.47005 * 15 10 9
45 45 H 1.09006 * 110.99944 * 271.93902 * 18 16 4
46 46 H 1.08996 * 111.00913 * 35.78910 * 18 16 4
47 47 H 1.08996 * 110.41611 * 204.29573 * 19 18 16
48 48 H 1.09001 * 110.30036 * 82.08553 * 19 18 16
49 49 H 0.97001 * 120.00023 * 180.02562 * 24 23 21
50 50 H 1.08995 * 109.88509 * 239.52371 * 29 20 19
51 51 H 1.09005 * 109.88352 * 118.36014 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 3.5050 1.4424 -0.0006
5 6 4.1785 1.3181 -1.1615
6 8 5.3912 1.2467 -1.1556
7 6 3.4388 1.2684 -2.4463
8 7 2.1346 1.2380 -2.6112
9 8 1.8350 1.2005 -3.7874
10 6 2.9143 1.2018 -4.5678
11 6 3.9878 1.2497 -3.7445
12 6 5.4185 1.2564 -4.1975
13 6 5.4610 0.8117 -5.6665
14 6 4.4275 1.6050 -6.4708
15 6 3.0125 1.1676 -6.0702
16 6 4.2380 1.5776 1.2606
17 1 3.5472 1.6797 2.0975
18 6 5.1868 0.3689 1.4763
19 6 6.2812 0.9929 2.3815
20 7 6.4452 2.3711 1.8843
21 6 7.5649 3.1452 2.0332
22 1 7.6861 4.0394 1.4397
23 6 8.5443 2.7806 2.9468
24 7 8.3153 1.8087 3.8043
25 14 10.1873 3.6693 2.9592
26 1 10.1527 4.7598 3.9667
27 1 11.2665 2.7098 3.3054
28 1 10.4490 4.2450 1.6155
29 6 5.2073 2.7771 1.2030
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5139 0.8899
32 1 -0.3633 0.5139 -0.8900
33 1 1.8933 -0.5139 -0.8901
34 1 1.8933 -0.5139 0.8900
35 1 1.6767 1.9563 0.8900
36 1 1.6767 1.9563 -0.8900
37 1 6.0032 0.5674 -3.5878
38 1 5.8250 2.2637 -4.1063
39 1 5.2326 -0.2521 -5.7308
40 1 6.4558 0.9948 -6.0727
41 1 4.5765 1.4202 -7.5348
42 1 4.5494 2.6688 -6.2671
43 1 2.8262 0.1547 -6.4275
44 1 2.2804 1.8498 -6.5020
45 1 4.6720 -0.4457 1.9858
46 1 5.6098 0.0306 0.5304
47 1 7.2158 0.4407 2.2838
48 1 5.9529 1.0011 3.4208
49 1 8.9996 1.5541 4.4429
50 1 5.4215 3.0310 0.1650
51 1 4.7672 3.6340 1.7132
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001713720427.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:17:37
Heat of formation + Delta-G solvation = 36.346665 kcal
Electronic energy + Delta-G solvation = -32372.625862 eV
Core-core repulsion = 28275.355192 eV
Total energy + Delta-G solvation = -4097.270670 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.21 seconds
Orbital eigenvalues (eV)
-46.15943 -41.48561 -38.80533 -38.40480 -37.28492 -35.06826 -34.42934 -33.35340
-31.98018 -31.33346 -30.95855 -29.24557 -27.30033 -26.80389 -25.59928 -24.74633
-23.74430 -22.91034 -22.31319 -22.09307 -20.99625 -19.76535 -18.96655 -18.79965
-18.43586 -17.88101 -17.12238 -16.73794 -16.27801 -16.04446 -15.83172 -15.76278
-15.53115 -14.92327 -14.83977 -14.79869 -14.41645 -14.22547 -14.17991 -14.11053
-13.93447 -13.56629 -13.26935 -13.18328 -13.01256 -12.85452 -12.75412 -12.59830
-12.36207 -12.29661 -12.06271 -12.03290 -11.94643 -11.87482 -11.86733 -11.78988
-11.56428 -11.53001 -11.17950 -10.88484 -10.71831 -10.08395 -9.75564 -8.84979
-7.92417 -5.28100 0.03089 0.64131 1.41077 1.43973 1.53635 1.61631
1.96446 2.01586 2.46816 2.76330 3.26707 3.40293 3.64483 3.66157
3.76529 3.79981 3.95053 3.97762 3.99771 4.07667 4.11971 4.15841
4.23284 4.34583 4.36405 4.47201 4.48022 4.57316 4.60197 4.67887
4.73873 4.87246 4.88497 4.88834 4.93202 4.94535 4.98459 4.99900
5.15908 5.17468 5.19366 5.21530 5.33034 5.36114 5.42443 5.42707
5.53078 5.56919 5.67206 6.15641 6.21880 6.86315 7.03875 7.06076
7.70786 8.39668 9.20260
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011314 B = 0.003470 C = 0.002779
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2474.280946 B = 8068.321094 C =10074.511718
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.126 4.126
3 C 0.099 3.901
4 N -0.587 5.587
5 C 0.583 3.417
6 O -0.537 6.537
7 C -0.035 4.035
8 N -0.331 5.331
9 O 0.130 5.870
10 C -0.017 4.017
11 C -0.178 4.178
12 C -0.048 4.048
13 C -0.118 4.118
14 C -0.115 4.115
15 C -0.032 4.032
16 C 0.152 3.848
17 H 0.123 0.877
18 C -0.140 4.140
19 C 0.190 3.810
20 N -0.614 5.614
21 C -0.248 4.248
22 H 0.067 0.933
23 C -0.059 4.059
24 N -0.944 5.944
25 Si 0.979 3.021
26 H -0.279 1.279
27 H -0.288 1.288
28 H -0.274 1.274
29 C 0.133 3.867
30 H 0.061 0.939
31 H 0.066 0.934
32 H 0.060 0.940
33 H 0.043 0.957
34 H 0.059 0.941
35 H 0.098 0.902
36 H 0.097 0.903
37 H 0.059 0.941
38 H 0.067 0.933
39 H 0.073 0.927
40 H 0.084 0.916
41 H 0.113 0.887
42 H 0.065 0.935
43 H 0.119 0.881
44 H 0.120 0.880
45 H 0.087 0.913
46 H 0.062 0.938
47 H 0.020 0.980
48 H 0.013 0.987
49 H 0.250 0.750
50 H 0.016 0.984
51 H 0.023 0.977
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.821 -4.025 -22.030 29.253
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.165 4.165
3 C -0.023 4.023
4 N -0.319 5.319
5 C 0.369 3.631
6 O -0.412 6.412
7 C -0.192 4.192
8 N -0.035 5.035
9 O 0.057 5.943
10 C -0.081 4.081
11 C -0.183 4.183
12 C -0.085 4.085
13 C -0.155 4.155
14 C -0.153 4.153
15 C -0.070 4.070
16 C 0.049 3.951
17 H 0.140 0.860
18 C -0.179 4.179
19 C 0.065 3.935
20 N -0.340 5.340
21 C -0.377 4.377
22 H 0.085 0.915
23 C -0.252 4.252
24 N -0.592 5.592
25 Si 0.806 3.194
26 H -0.206 1.206
27 H -0.215 1.215
28 H -0.199 1.199
29 C 0.007 3.993
30 H 0.080 0.920
31 H 0.085 0.915
32 H 0.079 0.921
33 H 0.062 0.938
34 H 0.077 0.923
35 H 0.116 0.884
36 H 0.114 0.886
37 H 0.078 0.922
38 H 0.085 0.915
39 H 0.092 0.908
40 H 0.102 0.898
41 H 0.131 0.869
42 H 0.083 0.917
43 H 0.137 0.863
44 H 0.138 0.862
45 H 0.105 0.895
46 H 0.080 0.920
47 H 0.038 0.962
48 H 0.031 0.969
49 H 0.059 0.941
50 H 0.034 0.966
51 H 0.041 0.959
Dipole moment (debyes) X Y Z Total
from point charges -19.013 -4.040 -20.985 28.604
hybrid contribution 2.039 0.432 0.608 2.172
sum -16.974 -3.607 -20.377 26.765
Atomic orbital electron populations
1.21596 0.92931 1.02408 1.02593 1.21768 0.97888 0.95656 1.01152
1.22227 0.76473 0.98773 1.04828 1.47907 1.08143 1.70723 1.05103
1.17360 0.86114 0.77169 0.82458 1.90858 1.14127 1.49623 1.86584
1.22962 0.90979 1.09107 0.96105 1.74672 1.14406 1.17690 0.96699
1.84655 1.33235 1.64962 1.11418 1.24796 0.83511 1.01689 0.98125
1.20877 0.99608 1.07856 0.89972 1.19985 0.88722 1.01825 0.97994
1.21714 1.01205 1.00853 0.91739 1.21690 0.91675 1.00200 1.01686
1.20596 0.99895 1.05968 0.80525 1.22027 0.93130 0.94876 0.85086
0.85970 1.23231 0.97090 0.97180 1.00393 1.21050 0.94681 0.84345
0.93461 1.44487 1.11628 1.12342 1.65565 1.19275 0.96245 1.05898
1.16270 0.91493 1.25701 1.02738 1.00330 0.96476 1.70134 1.34243
1.33171 1.21610 0.85078 0.78965 0.77499 0.77844 1.20583 1.21453
1.19916 1.21558 0.87218 0.95314 0.95214 0.91979 0.91543 0.92090
0.93830 0.92262 0.88375 0.88562 0.92235 0.91480 0.90821 0.89758
0.86905 0.91665 0.86308 0.86187 0.89496 0.91982 0.96190 0.96881
0.94060 0.96647 0.95923
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.26 9.91 71.98 0.71 -1.55 16
2 C -0.13 -2.81 5.80 30.59 0.18 -2.63 16
3 C 0.10 2.45 4.99 86.38 0.43 2.88 16
4 N -0.59 -19.64 2.55 -794.08 -2.03 -21.67 16
5 C 0.58 21.87 6.73 86.93 0.59 22.45 16
6 O -0.54 -24.67 12.43 -3.68 -0.05 -24.71 16
7 C -0.04 -1.09 6.68 42.55 0.28 -0.80 16
8 N -0.33 -8.45 7.65 -48.95 -0.37 -8.83 16
9 O 0.13 2.69 11.18 78.72 0.88 3.57 16
10 C -0.02 -0.30 7.38 24.99 0.18 -0.12 16
11 C -0.18 -4.61 6.05 -20.05 -0.12 -4.73 16
12 C -0.05 -1.19 5.70 29.83 0.17 -1.02 16
13 C -0.12 -1.71 5.92 30.81 0.18 -1.53 16
14 C -0.12 -1.01 5.88 30.77 0.18 -0.82 16
15 C -0.03 -0.26 6.31 29.96 0.19 -0.07 16
16 C 0.15 5.83 3.43 46.18 0.16 5.99 16
17 H 0.12 3.99 7.79 -2.39 -0.02 3.97 16
18 C -0.14 -5.98 6.43 32.06 0.21 -5.78 16
19 C 0.19 10.26 5.37 86.93 0.47 10.73 16
20 N -0.61 -35.26 3.39 -691.56 -2.35 -37.61 16
21 C -0.25 -15.31 10.21 84.03 0.86 -14.45 16
22 H 0.07 4.07 7.85 -2.91 -0.02 4.05 16
23 C -0.06 -3.55 5.38 84.86 0.46 -3.10 16
24 N -0.94 -59.51 10.90 21.65 0.24 -59.27 16
25 Si 0.98 48.50 29.56 68.60 2.03 50.53 16
26 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16
27 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16
28 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16
29 C 0.13 6.39 6.49 86.73 0.56 6.95 16
30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
33 H 0.04 1.12 7.15 -2.38 -0.02 1.10 16
34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16
35 H 0.10 2.07 7.83 -2.38 -0.02 2.05 16
36 H 0.10 2.40 5.34 -2.38 -0.01 2.39 16
37 H 0.06 1.83 7.76 -2.38 -0.02 1.81 16
38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16
39 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16
40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16
41 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16
42 H 0.06 0.69 8.12 -2.39 -0.02 0.67 16
43 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16
44 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16
45 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16
46 H 0.06 2.93 5.90 -2.39 -0.01 2.92 16
47 H 0.02 1.20 7.29 -2.39 -0.02 1.18 16
48 H 0.01 0.75 7.96 -2.39 -0.02 0.73 16
49 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16
50 H 0.02 0.80 6.19 -2.39 -0.01 0.79 16
51 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16
Total: -1.00 -79.63 392.81 4.96 -74.66
By element:
Atomic # 1 Polarization: 9.98 SS G_CDS: 0.92 Total: 10.90 kcal
Atomic # 6 Polarization: 6.73 SS G_CDS: 5.69 Total: 12.42 kcal
Atomic # 7 Polarization: -122.86 SS G_CDS: -4.51 Total: -127.37 kcal
Atomic # 8 Polarization: -21.97 SS G_CDS: 0.83 Total: -21.14 kcal
Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal
Total: -79.63 4.96 -74.66 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713720427.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.011 kcal
(2) G-P(sol) polarization free energy of solvation -79.626 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.385 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.664 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.347 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.21 seconds