Wall clock time and date at job start Wed Apr 1 2020 05:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47421 * 2 1 4 4 N 1.46498 * 109.47170 * 180.02562 * 3 2 1 5 5 C 1.34782 * 120.00212 * 83.88179 * 4 3 2 6 6 O 1.21488 * 120.00175 * 183.90288 * 5 4 3 7 7 C 1.48330 * 119.99746 * 3.89699 * 5 4 3 8 8 N 1.31501 * 127.15629 * 354.79527 * 7 5 4 9 9 O 1.21430 * 111.52544 * 179.97438 * 8 7 5 10 10 C 1.33187 * 111.56729 * 359.96196 * 9 8 7 11 11 C 1.35376 * 106.63764 * 359.82735 * 10 9 8 12 12 C 1.50069 * 124.93348 * 179.43909 * 11 10 9 13 13 C 1.53546 * 108.29162 * 344.44907 * 12 11 10 14 14 C 1.53108 * 109.50627 * 48.97690 * 13 12 11 15 15 C 1.50604 * 129.59828 * 180.18637 * 10 9 8 16 16 C 1.46501 * 119.99808 * 263.87209 * 4 3 2 17 17 H 1.08993 * 110.64329 * 359.30820 * 16 4 3 18 18 C 1.55162 * 110.71353 * 122.44595 * 16 4 3 19 19 C 1.55129 * 101.48516 * 153.73864 * 18 16 4 20 20 N 1.47428 * 104.93874 * 323.21879 * 19 18 16 21 21 C 1.36936 * 125.64640 * 203.96742 * 20 19 18 22 22 H 1.07998 * 119.99957 * 165.18353 * 21 20 19 23 23 C 1.38813 * 119.99877 * 345.19065 * 21 20 19 24 24 N 1.31618 * 120.00111 * 350.11571 * 23 21 20 25 25 Si 1.86802 * 119.99719 * 170.11839 * 23 21 20 26 26 H 1.48504 * 109.47214 * 94.95039 * 25 23 21 27 27 H 1.48503 * 109.46925 * 214.94875 * 25 23 21 28 28 H 1.48507 * 109.47292 * 334.94989 * 25 23 21 29 29 C 1.47018 * 108.70399 * 24.00456 * 20 19 18 30 30 H 1.08998 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47183 * 300.00322 * 1 2 3 32 32 H 1.08998 * 109.47063 * 59.99830 * 1 2 3 33 33 H 1.09007 * 109.46824 * 239.99968 * 2 1 3 34 34 H 1.08998 * 109.47063 * 120.00170 * 2 1 3 35 35 H 1.09005 * 109.47335 * 59.99652 * 3 2 1 36 36 H 1.09008 * 109.47117 * 300.00250 * 3 2 1 37 37 H 1.09004 * 109.85900 * 224.64581 * 12 11 10 38 38 H 1.08998 * 109.53519 * 104.06847 * 12 11 10 39 39 H 1.08995 * 109.46964 * 288.96357 * 13 12 11 40 40 H 1.09002 * 109.45877 * 168.98351 * 13 12 11 41 41 H 1.09007 * 109.42858 * 170.05839 * 14 13 12 42 42 H 1.09002 * 109.39049 * 50.19442 * 14 13 12 43 43 H 1.09003 * 109.69515 * 282.91913 * 15 10 9 44 44 H 1.08993 * 109.70008 * 43.47005 * 15 10 9 45 45 H 1.09006 * 110.99944 * 271.93902 * 18 16 4 46 46 H 1.08996 * 111.00913 * 35.78910 * 18 16 4 47 47 H 1.08996 * 110.41611 * 204.29573 * 19 18 16 48 48 H 1.09001 * 110.30036 * 82.08553 * 19 18 16 49 49 H 0.97001 * 120.00023 * 180.02562 * 24 23 21 50 50 H 1.08995 * 109.88509 * 239.52371 * 29 20 19 51 51 H 1.09005 * 109.88352 * 118.36014 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1785 1.3181 -1.1615 6 8 5.3912 1.2467 -1.1556 7 6 3.4388 1.2684 -2.4463 8 7 2.1346 1.2380 -2.6112 9 8 1.8350 1.2005 -3.7874 10 6 2.9143 1.2018 -4.5678 11 6 3.9878 1.2497 -3.7445 12 6 5.4185 1.2564 -4.1975 13 6 5.4610 0.8117 -5.6665 14 6 4.4275 1.6050 -6.4708 15 6 3.0125 1.1676 -6.0702 16 6 4.2380 1.5776 1.2606 17 1 3.5472 1.6797 2.0975 18 6 5.1868 0.3689 1.4763 19 6 6.2812 0.9929 2.3815 20 7 6.4452 2.3711 1.8843 21 6 7.5649 3.1452 2.0332 22 1 7.6861 4.0394 1.4397 23 6 8.5443 2.7806 2.9468 24 7 8.3153 1.8087 3.8043 25 14 10.1873 3.6693 2.9592 26 1 10.1527 4.7598 3.9667 27 1 11.2665 2.7098 3.3054 28 1 10.4490 4.2450 1.6155 29 6 5.2073 2.7771 1.2030 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 6.0032 0.5674 -3.5878 38 1 5.8250 2.2637 -4.1063 39 1 5.2326 -0.2521 -5.7308 40 1 6.4558 0.9948 -6.0727 41 1 4.5765 1.4202 -7.5348 42 1 4.5494 2.6688 -6.2671 43 1 2.8262 0.1547 -6.4275 44 1 2.2804 1.8498 -6.5020 45 1 4.6720 -0.4457 1.9858 46 1 5.6098 0.0306 0.5304 47 1 7.2158 0.4407 2.2838 48 1 5.9529 1.0011 3.4208 49 1 8.9996 1.5541 4.4429 50 1 5.4215 3.0310 0.1650 51 1 4.7672 3.6340 1.7132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713720427.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:37 Heat of formation + Delta-G solvation = 36.346665 kcal Electronic energy + Delta-G solvation = -32372.625862 eV Core-core repulsion = 28275.355192 eV Total energy + Delta-G solvation = -4097.270670 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -46.15943 -41.48561 -38.80533 -38.40480 -37.28492 -35.06826 -34.42934 -33.35340 -31.98018 -31.33346 -30.95855 -29.24557 -27.30033 -26.80389 -25.59928 -24.74633 -23.74430 -22.91034 -22.31319 -22.09307 -20.99625 -19.76535 -18.96655 -18.79965 -18.43586 -17.88101 -17.12238 -16.73794 -16.27801 -16.04446 -15.83172 -15.76278 -15.53115 -14.92327 -14.83977 -14.79869 -14.41645 -14.22547 -14.17991 -14.11053 -13.93447 -13.56629 -13.26935 -13.18328 -13.01256 -12.85452 -12.75412 -12.59830 -12.36207 -12.29661 -12.06271 -12.03290 -11.94643 -11.87482 -11.86733 -11.78988 -11.56428 -11.53001 -11.17950 -10.88484 -10.71831 -10.08395 -9.75564 -8.84979 -7.92417 -5.28100 0.03089 0.64131 1.41077 1.43973 1.53635 1.61631 1.96446 2.01586 2.46816 2.76330 3.26707 3.40293 3.64483 3.66157 3.76529 3.79981 3.95053 3.97762 3.99771 4.07667 4.11971 4.15841 4.23284 4.34583 4.36405 4.47201 4.48022 4.57316 4.60197 4.67887 4.73873 4.87246 4.88497 4.88834 4.93202 4.94535 4.98459 4.99900 5.15908 5.17468 5.19366 5.21530 5.33034 5.36114 5.42443 5.42707 5.53078 5.56919 5.67206 6.15641 6.21880 6.86315 7.03875 7.06076 7.70786 8.39668 9.20260 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.003470 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.280946 B = 8068.321094 C =10074.511718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.099 3.901 4 N -0.587 5.587 5 C 0.583 3.417 6 O -0.537 6.537 7 C -0.035 4.035 8 N -0.331 5.331 9 O 0.130 5.870 10 C -0.017 4.017 11 C -0.178 4.178 12 C -0.048 4.048 13 C -0.118 4.118 14 C -0.115 4.115 15 C -0.032 4.032 16 C 0.152 3.848 17 H 0.123 0.877 18 C -0.140 4.140 19 C 0.190 3.810 20 N -0.614 5.614 21 C -0.248 4.248 22 H 0.067 0.933 23 C -0.059 4.059 24 N -0.944 5.944 25 Si 0.979 3.021 26 H -0.279 1.279 27 H -0.288 1.288 28 H -0.274 1.274 29 C 0.133 3.867 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.043 0.957 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.065 0.935 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.087 0.913 46 H 0.062 0.938 47 H 0.020 0.980 48 H 0.013 0.987 49 H 0.250 0.750 50 H 0.016 0.984 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.821 -4.025 -22.030 29.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C -0.023 4.023 4 N -0.319 5.319 5 C 0.369 3.631 6 O -0.412 6.412 7 C -0.192 4.192 8 N -0.035 5.035 9 O 0.057 5.943 10 C -0.081 4.081 11 C -0.183 4.183 12 C -0.085 4.085 13 C -0.155 4.155 14 C -0.153 4.153 15 C -0.070 4.070 16 C 0.049 3.951 17 H 0.140 0.860 18 C -0.179 4.179 19 C 0.065 3.935 20 N -0.340 5.340 21 C -0.377 4.377 22 H 0.085 0.915 23 C -0.252 4.252 24 N -0.592 5.592 25 Si 0.806 3.194 26 H -0.206 1.206 27 H -0.215 1.215 28 H -0.199 1.199 29 C 0.007 3.993 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.131 0.869 42 H 0.083 0.917 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.105 0.895 46 H 0.080 0.920 47 H 0.038 0.962 48 H 0.031 0.969 49 H 0.059 0.941 50 H 0.034 0.966 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -19.013 -4.040 -20.985 28.604 hybrid contribution 2.039 0.432 0.608 2.172 sum -16.974 -3.607 -20.377 26.765 Atomic orbital electron populations 1.21596 0.92931 1.02408 1.02593 1.21768 0.97888 0.95656 1.01152 1.22227 0.76473 0.98773 1.04828 1.47907 1.08143 1.70723 1.05103 1.17360 0.86114 0.77169 0.82458 1.90858 1.14127 1.49623 1.86584 1.22962 0.90979 1.09107 0.96105 1.74672 1.14406 1.17690 0.96699 1.84655 1.33235 1.64962 1.11418 1.24796 0.83511 1.01689 0.98125 1.20877 0.99608 1.07856 0.89972 1.19985 0.88722 1.01825 0.97994 1.21714 1.01205 1.00853 0.91739 1.21690 0.91675 1.00200 1.01686 1.20596 0.99895 1.05968 0.80525 1.22027 0.93130 0.94876 0.85086 0.85970 1.23231 0.97090 0.97180 1.00393 1.21050 0.94681 0.84345 0.93461 1.44487 1.11628 1.12342 1.65565 1.19275 0.96245 1.05898 1.16270 0.91493 1.25701 1.02738 1.00330 0.96476 1.70134 1.34243 1.33171 1.21610 0.85078 0.78965 0.77499 0.77844 1.20583 1.21453 1.19916 1.21558 0.87218 0.95314 0.95214 0.91979 0.91543 0.92090 0.93830 0.92262 0.88375 0.88562 0.92235 0.91480 0.90821 0.89758 0.86905 0.91665 0.86308 0.86187 0.89496 0.91982 0.96190 0.96881 0.94060 0.96647 0.95923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.91 71.98 0.71 -1.55 16 2 C -0.13 -2.81 5.80 30.59 0.18 -2.63 16 3 C 0.10 2.45 4.99 86.38 0.43 2.88 16 4 N -0.59 -19.64 2.55 -794.08 -2.03 -21.67 16 5 C 0.58 21.87 6.73 86.93 0.59 22.45 16 6 O -0.54 -24.67 12.43 -3.68 -0.05 -24.71 16 7 C -0.04 -1.09 6.68 42.55 0.28 -0.80 16 8 N -0.33 -8.45 7.65 -48.95 -0.37 -8.83 16 9 O 0.13 2.69 11.18 78.72 0.88 3.57 16 10 C -0.02 -0.30 7.38 24.99 0.18 -0.12 16 11 C -0.18 -4.61 6.05 -20.05 -0.12 -4.73 16 12 C -0.05 -1.19 5.70 29.83 0.17 -1.02 16 13 C -0.12 -1.71 5.92 30.81 0.18 -1.53 16 14 C -0.12 -1.01 5.88 30.77 0.18 -0.82 16 15 C -0.03 -0.26 6.31 29.96 0.19 -0.07 16 16 C 0.15 5.83 3.43 46.18 0.16 5.99 16 17 H 0.12 3.99 7.79 -2.39 -0.02 3.97 16 18 C -0.14 -5.98 6.43 32.06 0.21 -5.78 16 19 C 0.19 10.26 5.37 86.93 0.47 10.73 16 20 N -0.61 -35.26 3.39 -691.56 -2.35 -37.61 16 21 C -0.25 -15.31 10.21 84.03 0.86 -14.45 16 22 H 0.07 4.07 7.85 -2.91 -0.02 4.05 16 23 C -0.06 -3.55 5.38 84.86 0.46 -3.10 16 24 N -0.94 -59.51 10.90 21.65 0.24 -59.27 16 25 Si 0.98 48.50 29.56 68.60 2.03 50.53 16 26 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 27 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 28 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 29 C 0.13 6.39 6.49 86.73 0.56 6.95 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.04 1.12 7.15 -2.38 -0.02 1.10 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.10 2.07 7.83 -2.38 -0.02 2.05 16 36 H 0.10 2.40 5.34 -2.38 -0.01 2.39 16 37 H 0.06 1.83 7.76 -2.38 -0.02 1.81 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 42 H 0.06 0.69 8.12 -2.39 -0.02 0.67 16 43 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 46 H 0.06 2.93 5.90 -2.39 -0.01 2.92 16 47 H 0.02 1.20 7.29 -2.39 -0.02 1.18 16 48 H 0.01 0.75 7.96 -2.39 -0.02 0.73 16 49 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 50 H 0.02 0.80 6.19 -2.39 -0.01 0.79 16 51 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -79.63 392.81 4.96 -74.66 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.92 Total: 10.90 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 5.69 Total: 12.42 kcal Atomic # 7 Polarization: -122.86 SS G_CDS: -4.51 Total: -127.37 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: 0.83 Total: -21.14 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Total: -79.63 4.96 -74.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713720427.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.011 kcal (2) G-P(sol) polarization free energy of solvation -79.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds