Wall clock time and date at job start Wed Apr 1 2020 05:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47209 * 2 1 4 4 N 1.46499 * 109.47199 * 184.22524 * 3 2 1 5 5 C 1.34773 * 120.00039 * 84.17745 * 4 3 2 6 6 O 1.21621 * 119.99789 * 175.16399 * 5 4 3 7 7 C 1.43198 * 120.00302 * 354.88497 * 5 4 3 8 8 C 3.75093 * 107.31444 * 285.87370 * 2 1 3 9 9 C 4.72270 * 93.63278 * 279.37335 * 2 1 3 10 10 C 1.52992 * 117.50020 * 0.47124 * 9 8 7 11 11 C 1.52995 * 117.49933 * 291.84641 * 9 8 7 12 12 C 1.46505 * 119.99943 * 264.18113 * 4 3 2 13 13 H 1.08995 * 110.27567 * 186.36026 * 12 4 3 14 14 C 1.54601 * 110.30668 * 308.55234 * 12 4 3 15 15 C 1.54939 * 102.92186 * 96.95841 * 14 12 4 16 16 N 1.48541 * 103.22441 * 37.41290 * 15 14 12 17 17 C 1.46904 * 110.99583 * 200.27907 * 16 15 14 18 18 C 1.50695 * 109.47304 * 307.39498 * 17 16 15 19 19 O 1.21299 * 120.00095 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00376 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00559 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99841 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00153 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00223 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99793 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47300 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46738 * 120.00417 * 25 23 21 28 28 H 1.48503 * 109.46969 * 240.00082 * 25 23 21 29 29 C 1.47894 * 105.82035 * 320.79212 * 16 15 14 30 30 H 1.08998 * 109.47802 * 59.99937 * 1 2 3 31 31 H 1.09002 * 109.47482 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47275 * 299.99888 * 1 2 3 33 33 H 1.09005 * 109.46762 * 240.00115 * 2 1 3 34 34 H 1.09000 * 109.47258 * 120.00596 * 2 1 3 35 35 H 1.08995 * 109.46882 * 64.22563 * 3 2 1 36 36 H 1.09000 * 109.47249 * 304.22475 * 3 2 1 37 37 H 1.09010 * 115.54660 * 146.17764 * 9 8 7 38 38 H 1.08995 * 117.49935 * 359.97438 * 10 9 8 39 39 H 1.09004 * 117.50100 * 145.02063 * 10 9 8 40 40 H 1.09007 * 117.49772 * 214.97838 * 11 9 8 41 41 H 1.09002 * 117.50006 * 359.97438 * 11 9 8 42 42 H 1.08995 * 110.72311 * 215.31839 * 14 12 4 43 43 H 1.08996 * 110.72075 * 338.60429 * 14 12 4 44 44 H 1.09002 * 110.66685 * 278.98367 * 15 14 12 45 45 H 1.08994 * 110.81299 * 155.91581 * 15 14 12 46 46 H 1.08998 * 109.47480 * 67.39926 * 17 16 15 47 47 H 1.08999 * 109.46410 * 187.39667 * 17 16 15 48 48 H 0.97004 * 119.99305 * 359.97438 * 20 18 17 49 49 H 0.96996 * 120.00219 * 180.02562 * 24 23 21 50 50 H 1.08998 * 109.91821 * 265.97718 * 29 16 15 51 51 H 1.09004 * 109.91545 * 144.68177 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5014 1.4437 -0.1018 5 6 4.0929 1.3545 -1.3095 6 8 5.3023 1.4439 -1.4023 7 6 3.2980 1.1483 -2.4826 8 6 2.6463 0.9795 -3.4444 9 6 1.8292 0.7676 -4.6503 10 6 1.1054 1.9818 -5.2354 11 6 0.3114 0.8958 -4.5067 12 6 4.3200 1.5420 1.1093 13 1 5.3730 1.6419 0.8464 14 6 3.8633 2.7426 1.9697 15 6 2.9235 2.0849 3.0112 16 7 3.5891 0.7884 3.2986 17 6 2.6415 -0.1725 3.8790 18 6 1.9535 0.4539 5.0644 19 8 2.2255 1.5893 5.3933 20 7 1.0361 -0.2475 5.7593 21 6 0.4098 0.3225 6.8375 22 1 0.6520 1.3335 7.1303 23 6 -0.5364 -0.4004 7.5535 24 7 -0.8307 -1.6307 7.1976 25 14 -1.3891 0.3761 9.0230 26 1 -0.8836 1.7591 9.2148 27 1 -2.8539 0.4138 8.7822 28 1 -1.1080 -0.4274 10.2399 29 6 4.1066 0.3044 2.0005 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.7398 1.9339 0.9254 36 1 1.6162 1.9777 -0.8497 37 1 2.2074 0.0216 -5.3493 38 1 1.2338 2.9375 -4.7272 39 1 1.0072 2.0350 -6.3197 40 1 -0.3090 0.2345 -5.1116 41 1 -0.0822 1.1366 -3.5191 42 1 4.7158 3.2113 2.4611 43 1 3.3199 3.4671 1.3632 44 1 1.9325 1.9228 2.5870 45 1 2.8596 2.6929 3.9136 46 1 1.8980 -0.4468 3.1306 47 1 3.1795 -1.0642 4.2005 48 1 0.8184 -1.1554 5.4961 49 1 -1.4915 -2.1352 7.6972 50 1 3.3816 -0.3656 1.5382 51 1 5.0538 -0.2143 2.1485 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714857036.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:11 Heat of formation + Delta-G solvation = 25.767262 kcal Electronic energy + Delta-G solvation = -31047.949034 eV Core-core repulsion = 26950.219606 eV Total energy + Delta-G solvation = -4097.729428 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.72063 -38.94528 -38.04248 -37.61499 -35.84663 -34.01286 -33.26835 -32.95645 -31.42381 -30.84381 -28.73256 -26.87081 -26.47422 -25.00839 -24.11592 -22.93855 -22.52281 -21.85641 -21.09955 -19.92367 -19.27161 -18.44994 -17.92715 -17.25040 -16.86786 -15.94586 -15.66995 -15.34829 -15.19580 -15.10755 -14.79775 -14.54465 -14.34994 -14.01201 -13.83632 -13.43842 -13.30964 -13.05829 -12.58407 -12.48888 -12.39704 -12.32438 -12.13896 -12.05493 -11.96905 -11.77312 -11.67768 -11.57726 -11.36560 -11.20863 -11.19075 -11.00496 -10.81748 -10.66774 -10.53045 -10.35996 -10.26463 -10.20534 -10.06491 -9.53837 -8.96302 -8.40609 -8.03859 -7.89094 -6.45980 -3.86841 1.24864 1.89794 2.66944 3.10127 3.13060 3.24274 3.31120 3.53535 3.62509 3.84625 4.06272 4.25985 4.29145 4.41567 4.43369 4.60254 4.61148 4.70049 4.82647 4.95522 5.00602 5.09332 5.09617 5.15535 5.18715 5.23909 5.30137 5.34965 5.47234 5.50056 5.51460 5.54212 5.58649 5.68716 5.71022 5.81089 5.86158 5.94488 5.98043 6.04958 6.10542 6.20892 6.26432 6.36108 6.63964 6.92559 7.07507 7.18277 7.25180 7.51599 7.84025 8.01880 8.56905 9.13796 9.49227 10.00626 10.71671 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.002434 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.922835 B =11501.219847 C =12791.648215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.099 3.901 4 N -0.591 5.591 5 C 0.635 3.365 6 O -0.525 6.525 7 C -0.208 4.208 8 C -0.057 4.057 9 C -0.065 4.065 10 C -0.159 4.159 11 C -0.159 4.159 12 C 0.130 3.870 13 H 0.112 0.888 14 C -0.135 4.135 15 C 0.035 3.965 16 N -0.490 5.490 17 C 0.036 3.964 18 C 0.442 3.558 19 O -0.580 6.580 20 N -0.561 5.561 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.016 3.984 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.135 0.865 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.121 0.879 46 H 0.047 0.953 47 H 0.090 0.910 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.058 0.942 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 2.545 -23.014 23.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C -0.024 4.024 4 N -0.323 5.323 5 C 0.423 3.577 6 O -0.402 6.402 7 C -0.211 4.211 8 C -0.060 4.060 9 C -0.083 4.083 10 C -0.196 4.196 11 C -0.196 4.196 12 C 0.027 3.973 13 H 0.130 0.870 14 C -0.174 4.174 15 C -0.092 4.092 16 N -0.215 5.215 17 C -0.095 4.095 18 C 0.228 3.772 19 O -0.465 6.465 20 N -0.197 5.197 21 C -0.428 4.428 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.113 4.113 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.152 0.848 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.056 0.944 45 H 0.139 0.861 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.225 0.775 49 H 0.081 0.919 50 H 0.076 0.924 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.501 3.288 -22.317 22.696 hybrid contribution -1.354 -0.703 -0.024 1.526 sum 1.147 2.585 -22.341 22.519 Atomic orbital electron populations 1.21695 0.94597 1.02397 1.02055 1.22136 0.96805 0.96670 1.02848 1.21895 0.78736 0.97770 1.03978 1.47910 1.07221 1.71739 1.05390 1.14727 0.85590 0.76688 0.80682 1.90847 1.13351 1.50060 1.85960 1.20553 0.99021 1.05262 0.96283 1.21286 0.96317 0.94043 0.94333 1.18893 0.92424 1.03490 0.93470 1.23101 1.01977 0.93587 1.00967 1.23120 0.91314 1.02088 1.03050 1.22067 0.96552 0.95630 0.83022 0.86992 1.22964 1.00982 0.96509 0.96947 1.23640 0.93966 0.91759 0.99856 1.64660 1.33098 1.02947 1.20777 1.22111 0.94509 0.96258 0.96648 1.19683 0.83616 0.87551 0.86375 1.90439 1.66684 1.18865 1.70508 1.41859 1.35127 1.15603 1.27148 1.19741 1.17797 1.00348 1.04870 0.87821 1.25268 0.97634 0.95580 0.99456 1.69616 1.33856 1.09548 1.41168 0.85809 0.78730 0.79312 0.80559 1.19198 1.20774 1.20715 1.23520 1.01608 0.96503 0.89661 0.92793 0.92088 0.92068 0.91766 0.90945 0.88612 0.90693 0.84759 0.88119 0.87356 0.87339 0.87990 0.89344 0.90797 0.94409 0.86075 0.93479 0.89213 0.77478 0.91889 0.92430 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.15 -1.50 5.76 -26.73 -0.15 -1.65 16 3 C 0.10 1.04 4.55 -4.04 -0.02 1.02 16 4 N -0.59 -7.18 2.37 -167.42 -0.40 -7.57 16 5 C 0.63 8.76 7.48 -14.34 -0.11 8.65 16 6 O -0.52 -8.84 16.46 5.26 0.09 -8.75 16 7 C -0.21 -2.52 11.07 -38.84 -0.43 -2.95 16 8 C -0.06 -0.57 13.47 -37.12 -0.50 -1.07 16 9 C -0.07 -0.42 6.22 -93.42 -0.58 -1.00 16 10 C -0.16 -0.79 10.21 -26.74 -0.27 -1.07 16 11 C -0.16 -0.79 10.21 -26.73 -0.27 -1.06 16 12 C 0.13 1.67 3.44 -66.57 -0.23 1.44 16 13 H 0.11 1.51 6.98 -51.93 -0.36 1.15 16 14 C -0.14 -1.73 6.11 -24.87 -0.15 -1.89 16 15 C 0.03 0.55 4.93 -1.89 -0.01 0.54 16 16 N -0.49 -7.98 5.26 -231.89 -1.22 -9.20 16 17 C 0.04 0.63 5.52 -4.98 -0.03 0.61 16 18 C 0.44 10.04 7.49 -10.99 -0.08 9.95 16 19 O -0.58 -14.82 13.09 5.54 0.07 -14.75 16 20 N -0.56 -13.80 5.29 -10.97 -0.06 -13.86 16 21 C -0.30 -8.08 9.68 -14.94 -0.14 -8.23 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 25 Si 0.93 20.66 29.55 -169.99 -5.02 15.63 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 C 0.02 0.21 6.25 -2.76 -0.02 0.20 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.06 0.67 7.37 -51.93 -0.38 0.28 16 34 H 0.07 0.83 5.06 -51.93 -0.26 0.57 16 35 H 0.10 1.08 4.49 -51.93 -0.23 0.84 16 36 H 0.07 0.72 7.25 -51.93 -0.38 0.34 16 37 H 0.13 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 0.86 7.71 -51.93 -0.40 0.46 16 44 H 0.04 0.59 5.84 -51.93 -0.30 0.29 16 45 H 0.12 2.33 5.96 -51.93 -0.31 2.02 16 46 H 0.05 0.74 7.23 -51.93 -0.38 0.37 16 47 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 48 H 0.39 9.28 7.90 -40.82 -0.32 8.95 16 49 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 50 H 0.06 0.74 4.22 -51.93 -0.22 0.52 16 51 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 409.19 15.07 6.17 6.17 Total: -1.00 -31.70 409.19 -10.08 -41.78 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -7.71 Total: 10.91 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -2.73 Total: 2.96 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.95 Total: -53.95 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.16 Total: -23.50 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.70 -10.08 -41.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714857036.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.550 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds